CoV-GLUE | Mutations
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LOWER THE MinProp value to see lower frequency mutations in the table.
Lineage = B.1.1.311 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5
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Lineage | ORF | CodonNum | Mutation | ORF1ab | MutType | C1 | C2 | C3 | RefCodon | MutCodon | Count | Proportion |
B.1.1.311 | noncoding | 241 | C241T | noncoding | 241 | 241 | 241 | C | T | 2713 | 0.971705 | |
B.1.1.311 | ORF1ab/nsp3 | 106 | F106F | F924F | syn | 3035 | 3036 | 3037 | ttC | ttT | 2792 | 1 |
B.1.1.311 | ORF1ab/nsp6 | 86 | M86I | M3655I | nonsyn | 11228 | 11229 | 11230 | atG | atT | 2791 | 0.999642 |
B.1.1.311 | ORF1ab/nsp6 | 143 | M143I | M3712I | nonsyn | 11399 | 11400 | 11401 | atG | atT | 2310 | 0.827364 |
B.1.1.311 | ORF1ab/nsp12 | 323 | P323L | P4715L | nonsyn | 14407 | 14408 | 14409 | cCt | cTt | 2779 | 0.995344 |
B.1.1.311 | S | 614 | D614G | nonsyn | 23402 | 23403 | 23404 | gAt | gGt | 2791 | 0.999642 | |
B.1.1.311 | S | 842 | G842G | syn | 24086 | 24087 | 24088 | ggT | ggC | 2762 | 0.989255 | |
B.1.1.311 | ORF3a | 75 | K75N | nonsyn | 25615 | 25616 | 25617 | aaG | aaT | 2777 | 0.994628 | |
B.1.1.311 | N | 203 | R203K | nonsyn | 28880 | 28881 | 28882 | aGG | aAA | 2775 | 0.993911 | |
B.1.1.311 | N | 204 | G204R | nonsyn | 28883 | 28884 | 28885 | Gga | Cga | 2773 | 0.993195 | |
B.1.1.311 | noncoding | 29730 | C29730- | noncoding | 29730 | 29730 | 29730 | C | - | 1752 | 0.627507 | |
B.1.1.311 | noncoding | 29731 | A29731- | noncoding | 29731 | 29731 | 29731 | A | - | 1754 | 0.628223 | |
B.1.1.311 | noncoding | 29732 | C29732- | noncoding | 29732 | 29732 | 29732 | C | - | 1759 | 0.630014 | |
B.1.1.311 | noncoding | 29733 | C29733- | noncoding | 29733 | 29733 | 29733 | C | - | 1761 | 0.630731 | |
B.1.1.311 | noncoding | 29734 | G29734- | noncoding | 29734 | 29734 | 29734 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29735 | A29735- | noncoding | 29735 | 29735 | 29735 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29736 | G29736- | noncoding | 29736 | 29736 | 29736 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29737 | G29737- | noncoding | 29737 | 29737 | 29737 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29738 | C29738- | noncoding | 29738 | 29738 | 29738 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29739 | C29739- | noncoding | 29739 | 29739 | 29739 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29740 | A29740- | noncoding | 29740 | 29740 | 29740 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29741 | C29741- | noncoding | 29741 | 29741 | 29741 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29742 | G29742- | noncoding | 29742 | 29742 | 29742 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29743 | C29743- | noncoding | 29743 | 29743 | 29743 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29744 | G29744- | noncoding | 29744 | 29744 | 29744 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29745 | G29745- | noncoding | 29745 | 29745 | 29745 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29746 | A29746- | noncoding | 29746 | 29746 | 29746 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29747 | G29747- | noncoding | 29747 | 29747 | 29747 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29748 | T29748- | noncoding | 29748 | 29748 | 29748 | T | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29749 | A29749- | noncoding | 29749 | 29749 | 29749 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29750 | C29750- | noncoding | 29750 | 29750 | 29750 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29751 | G29751- | noncoding | 29751 | 29751 | 29751 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29752 | A29752- | noncoding | 29752 | 29752 | 29752 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29753 | T29753- | noncoding | 29753 | 29753 | 29753 | T | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29754 | C29754- | noncoding | 29754 | 29754 | 29754 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29755 | G29755- | noncoding | 29755 | 29755 | 29755 | G | - | 1763 | 0.631447 | |
B.1.1.311 | noncoding | 29756 | A29756- | noncoding | 29756 | 29756 | 29756 | A | - | 1764 | 0.631805 | |
B.1.1.311 | noncoding | 29757 | G29757- | noncoding | 29757 | 29757 | 29757 | G | - | 1764 | 0.631805 | |
B.1.1.311 | noncoding | 29758 | T29758- | noncoding | 29758 | 29758 | 29758 | T | - | 1764 | 0.631805 | |
B.1.1.311 | noncoding | 29759 | G29759- | noncoding | 29759 | 29759 | 29759 | G | - | 1763 | 0.631447 | |
B.1.1.311 | noncoding | 29760 | T29760- | noncoding | 29760 | 29760 | 29760 | T | - | 1763 | 0.631447 | |
B.1.1.311 | noncoding | 29761 | A29761- | noncoding | 29761 | 29761 | 29761 | A | - | 1763 | 0.631447 | |
B.1.1.311 | noncoding | 29762 | C29762- | noncoding | 29762 | 29762 | 29762 | C | - | 1763 | 0.631447 | |
B.1.1.311 | noncoding | 29763 | A29763- | noncoding | 29763 | 29763 | 29763 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29764 | G29764- | noncoding | 29764 | 29764 | 29764 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29765 | T29765- | noncoding | 29765 | 29765 | 29765 | T | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29766 | G29766- | noncoding | 29766 | 29766 | 29766 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29767 | A29767- | noncoding | 29767 | 29767 | 29767 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29768 | A29768- | noncoding | 29768 | 29768 | 29768 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29769 | C29769- | noncoding | 29769 | 29769 | 29769 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29770 | A29770- | noncoding | 29770 | 29770 | 29770 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29771 | A29771- | noncoding | 29771 | 29771 | 29771 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29772 | T29772- | noncoding | 29772 | 29772 | 29772 | T | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29773 | G29773- | noncoding | 29773 | 29773 | 29773 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29774 | C29774- | noncoding | 29774 | 29774 | 29774 | C | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29775 | T29775- | noncoding | 29775 | 29775 | 29775 | T | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29776 | A29776- | noncoding | 29776 | 29776 | 29776 | A | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29777 | G29777- | noncoding | 29777 | 29777 | 29777 | G | - | 1762 | 0.631089 | |
B.1.1.311 | noncoding | 29778 | G29778- | noncoding | 29778 | 29778 | 29778 | G | - | 1757 | 0.629298 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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