CoV-GLUE | Mutations

CoV-GLUE Mutations: Lineage = AY.40

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Lineage: ORF: Mutation type: Min count: Min prop:


Lineage = AY.40 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5


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LineageORFCodonNumMutationORF1abMutTypeC1C2C3RefCodonMutCodonCountProportion
AY.40noncoding210G210Tnoncoding210210210GT9910.955641
AY.40noncoding241C241Tnoncoding241241241CT9930.95757
AY.40ORF1ab/nsp2129P129LP309Lnonsyn119011911192cCacTa9070.874638
AY.40ORF1ab/nsp2154G154GG334Gsyn126512661267ggCggT9170.884282
AY.40ORF1ab/nsp2251I251MI431Mnonsyn155615571558atAatG5900.568949
AY.40ORF1ab/nsp2369S369SS549Ssyn191019111912tcCtcT5600.540019
AY.40ORF1ab/nsp312V12VV830Vsyn275327542755gtGgtT6700.646095
AY.40ORF1ab/nsp3106F106FF924Fsyn303530363037ttCttT10290.992285
AY.40ORF1ab/nsp3822P822LP1640Lnonsyn518351845185cCtcTt9120.87946
AY.40ORF1ab/nsp31274H1274YH2092Ynonsyn653965406541CacTac8200.790743
AY.40ORF1ab/nsp4446A446VA3209Vnonsyn989098919892gCtgTt9210.888139
AY.40ORF1ab/nsp6149V149AV3718Anonsyn114171141811419gTtgCt9270.893925
AY.40ORF1ab/nsp987Y87YY4227Ysyn129441294512946taTtaC9220.889103
AY.40ORF1ab/nsp12323P323LP4715Lnonsyn144071440814409cCtcTt10360.999036
AY.40ORF1ab/nsp12671G671SG5063Snonsyn154511545215453GgtAgt10240.987464
AY.40ORF1ab/nsp12818M818VM5210Vnonsyn158921589315894AtgGtg5900.568949
AY.40ORF1ab/nsp1377P77LP5401Lnonsyn164651646616467cCacTa10340.997107
AY.40ORF1ab/nsp15A1-B214L214LL6666Lsyn202602026120262ttAttG8560.825458
AY.40ORF1ab/nsp15A1-B234H234YH6686Ynonsyn203202032120322CatTat8900.858245
AY.40S19T19Rnonsyn216172161821619aCaaGa9870.951784
AY.40S156E156deldel220282202922030GAG---7720.744455
AY.40S157F157deldel220312203222033TTC---7710.743491
AY.40S158R158Gnonsyn220342203522036AgaGga7750.747348
AY.40S452L452Rnonsyn229162291722918cTgcGg9400.906461
AY.40S478T478Knonsyn229942299522996aCaaAa9440.910318
AY.40S574D574Ynonsyn232822328323284GatTat5610.540984
AY.40S614D614Gnonsyn234022340323404gAtgGt10350.998071
AY.40S681P681Rnonsyn236032360423605cCtcGt10360.999036
AY.40S950D950Nnonsyn244102441124412GatAat9850.949855
AY.40S1061V1061Vsyn247432474424745gtCgtT8460.815815
AY.40ORF3a26S26Lnonsyn254682546925470tCatTa10270.990357
AY.40M82I82Tnonsyn267662676726768aTcaCc10290.992285
AY.40ORF7a82V82Anonsyn276372763827639gTtgCt8590.828351
AY.40ORF7a116L116Fnonsyn277392774027741CtcTtc7430.71649
AY.40ORF7a120T120Inonsyn277512775227753aCaaTa8380.8081
AY.40ORF869S69Lnonsyn280982809928100tCatTa5580.538091
AY.40ORF8119D119deldel282482824928250GAT---9000.867888
AY.40ORF8120F120deldel282512825228253TTC---8980.865959
AY.40noncoding28271A28271-noncoding282712827128271A-8970.864995
AY.40N8N8Nsyn282952829628297aaTaaC5600.540019
AY.40N63D63Gnonsyn284602846128462gAcgGc10040.968177
AY.40N139L139Fnonsyn286882868928690ttGttT6310.608486
AY.40N203R203Mnonsyn288802888128882aGgaTg7380.711668
AY.40N377D377Ynonsyn294022940329404GatTat8910.859209
AY.40N385R385Knonsyn294262942729428aGaaAa7580.730955
AY.40noncoding29742G29742Tnoncoding297422974229742GT9420.90839