CoV-GLUE | Mutations

CoV-GLUE Mutations: Lineage = AY.39.1.1

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Lineage: ORF: Mutation type: Min count: Min prop:


Lineage = AY.39.1.1 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5


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LineageORFCodonNumMutationORF1abMutTypeC1C2C3RefCodonMutCodonCountProportion
AY.39.1.1noncoding210G210Tnoncoding210210210GT12860.931884
AY.39.1.1noncoding241C241Tnoncoding241241241CT12860.931884
AY.39.1.1ORF1ab/nsp3106F106FF924Fsyn303530363037ttCttT13670.99058
AY.39.1.1ORF1ab/nsp3488A488SA1306Snonsyn418141824183GctTct13790.999275
AY.39.1.1ORF1ab/nsp31228P1228LP2046Lnonsyn640164026403cCacTa13740.995652
AY.39.1.1ORF1ab/nsp31469P1469SP2287Snonsyn712471257126CctTct13740.995652
AY.39.1.1ORF1ab/nsp4144D144DD2907Dsyn898489858986gaCgaT13801
AY.39.1.1ORF1ab/nsp4167V167LV2930Lnonsyn905390549055GtaTta13801
AY.39.1.1ORF1ab/nsp4204T204IT2967Inonsyn916491659166aCcaTc11170.80942
AY.39.1.1ORF1ab/nsp4492T492IT3255Inonsyn100281002910030aCcaTc13770.997826
AY.39.1.1ORF1ab/nsp677T77AT3646Anonsyn112011120211203ActGct13801
AY.39.1.1ORF1ab/nsp6120V120VV3689Vsyn113301133111332gtAgtG13801
AY.39.1.1ORF1ab/nsp1214V14VV4406Vsyn134801348113482gtAgtG13700.992754
AY.39.1.1ORF1ab/nsp12323P323LP4715Lnonsyn144071440814409cCtcTt13790.999275
AY.39.1.1ORF1ab/nsp12671G671SG5063Snonsyn154511545215453GgtAgt13760.997101
AY.39.1.1ORF1ab/nsp1377P77LP5401Lnonsyn164651646616467cCacTa13801
AY.39.1.1ORF1ab/nsp14A2-B64Y64YY5989Ysyn182291823018231taTtaC11140.807246
AY.39.1.1ORF1ab/nsp14A2-B394A394VA6319Vnonsyn192191922019221gCtgTt13801
AY.39.1.1ORF1ab/nsp14A2-B508L508FL6433Fnonsyn195611956219563ttGttT13670.99058
AY.39.1.1ORF1ab/nsp16238Q238HQ7036Hnonsyn213702137121372caGcaT13660.989855
AY.39.1.1S19T19Rnonsyn216172161821619aCaaGa13790.999275
AY.39.1.1S95T95Inonsyn218452184621847aCtaTt12920.936232
AY.39.1.1S142G142Dnonsyn219862198721988gGtgAt12690.919565
AY.39.1.1S156E156deldel220282202922030GAG---13530.980435
AY.39.1.1S157F157deldel220312203222033TTC---13530.980435
AY.39.1.1S158R158Gnonsyn220342203522036AgaGga13530.980435
AY.39.1.1S452L452Rnonsyn229162291722918cTgcGg13760.997101
AY.39.1.1S478T478Knonsyn229942299522996aCaaAa13760.997101
AY.39.1.1S614D614Gnonsyn234022340323404gAtgGt13780.998551
AY.39.1.1S681P681Rnonsyn236032360423605cCtcGt13780.998551
AY.39.1.1S950D950Nnonsyn244102441124412GatAat13790.999275
AY.39.1.1ORF3a26S26Lnonsyn254682546925470tCatTa13790.999275
AY.39.1.1M82I82Tnonsyn267662676726768aTcaCc13801
AY.39.1.1ORF7a71V71Inonsyn276042760527606GtaAta13170.954348
AY.39.1.1ORF7a82V82Anonsyn276372763827639gTtgCt13190.955797
AY.39.1.1ORF7a101F101deldel276942769527696TTT---10300.746377
AY.39.1.1ORF7a102L102deldel276972769827699CTT---11360.823188
AY.39.1.1ORF7a103I103deldel277002770127702ATT---11360.823188
AY.39.1.1ORF7a104V104del1del277032770427705Gtt-tt10320.747826
AY.39.1.1ORF7a120T120Inonsyn277512775227753aCaaTa13100.949275
AY.39.1.1ORF7b40T40Inonsyn278732787427875aCtaTt13760.997101
AY.39.1.1ORF8119D119deldel282482824928250GAT---13770.997826
AY.39.1.1ORF8120F120deldel282512825228253TTC---13770.997826
AY.39.1.1noncoding28271A28271-noncoding282712827128271A-13750.996377
AY.39.1.1N63D63Gnonsyn284602846128462gAcgGc13780.998551
AY.39.1.1N203R203Mnonsyn288802888128882aGgaTg13801
AY.39.1.1N215G215Cnonsyn289162891728918GgtTgt13790.999275
AY.39.1.1N377D377Ynonsyn294022940329404GatTat13780.998551
AY.39.1.1noncoding29742G29742Tnoncoding297422974229742GT12840.930435