CoV-GLUE | Mutations

CoV-GLUE Mutations: Lineage = AY.3.1

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Lineage: ORF: Mutation type: Min count: Min prop:


Lineage = AY.3.1 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5


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LineageORFCodonNumMutationORF1abMutTypeC1C2C3RefCodonMutCodonCountProportion
AY.3.1noncoding210G210Tnoncoding210210210GT113860.970756
AY.3.1noncoding241C241Tnoncoding241241241CT114360.975019
AY.3.1ORF1ab/nsp3106F106FF924Fsyn303530363037ttCttT115880.987979
AY.3.1ORF1ab/nsp3309D309YD1127Ynonsyn364436453646GacTac117150.998806
AY.3.1ORF1ab/nsp3488A488SA1306Snonsyn418141824183GctTct117070.998124
AY.3.1ORF1ab/nsp31228P1228LP2046Lnonsyn640164026403cCacTa116660.994629
AY.3.1ORF1ab/nsp31469P1469SP2287Snonsyn712471257126CctTct111430.950038
AY.3.1ORF1ab/nsp4144D144DD2907Dsyn898489858986gaCgaT117100.99838
AY.3.1ORF1ab/nsp4167V167LV2930Lnonsyn905390549055GtaTta116940.997016
AY.3.1ORF1ab/nsp4492T492IT3255Inonsyn100281002910030aCcaTc103210.879956
AY.3.1ORF1ab/nsp677T77AT3646Anonsyn112011120211203ActGct116990.997442
AY.3.1ORF1ab/nsp6120V120VV3689Vsyn113301133111332gtAgtG116960.997186
AY.3.1ORF1ab/nsp6162I162VI3731Vnonsyn114561145711458AttGtt117250.999659
AY.3.1ORF1ab/nsp12323P323LP4715Lnonsyn144071440814409cCtcTt116280.991389
AY.3.1ORF1ab/nsp12671G671SG5063Snonsyn154511545215453GgtAgt117210.999318
AY.3.1ORF1ab/nsp1377P77LP5401Lnonsyn164651646616467cCacTa117120.998551
AY.3.1ORF1ab/nsp14A2-B26H26YH5951Ynonsyn181151811618117CacTac116880.996504
AY.3.1ORF1ab/nsp14A2-B394A394VA6319Vnonsyn192191922019221gCtgTt117040.997869
AY.3.1ORF1ab/nsp15A1-B193Y193YY6645Ysyn201972019820199taCtaT113840.970586
AY.3.1S19T19Rnonsyn216172161821619aCaaGa116110.989939
AY.3.1S142G142Dnonsyn219862198721988gGtgAt60920.519396
AY.3.1S156E156deldel220282202922030GAG---108430.924461
AY.3.1S157F157deldel220312203222033TTC---108390.92412
AY.3.1S158R158Gnonsyn220342203522036AgaGga109780.935971
AY.3.1S452L452Rnonsyn229162291722918cTgcGg112360.957967
AY.3.1S478T478Knonsyn229942299522996aCaaAa112700.960866
AY.3.1S574D574Dsyn232822328323284gaTgaC116810.995908
AY.3.1S614D614Gnonsyn234022340323404gAtgGt117130.998636
AY.3.1S681P681Rnonsyn236032360423605cCtcGt117030.997783
AY.3.1S950D950Nnonsyn244102441124412GatAat112260.957115
AY.3.1S1259D1259Dsyn253372533825339gaCgaT116750.995396
AY.3.1ORF3a26S26Lnonsyn254682546925470tCatTa117160.998892
AY.3.1M82I82Tnonsyn267662676726768aTcaCc117250.999659
AY.3.1ORF7a82V82Anonsyn276372763827639gTtgCt107380.915509
AY.3.1ORF7a120T120Inonsyn277512775227753aCaaTa111870.95379
AY.3.1ORF7b40T40Inonsyn278732787427875aCtaTt116880.996504
AY.3.1ORF8119D119deldel282482824928250GAT---113650.968966
AY.3.1ORF8120F120deldel282512825228253TTC---113650.968966
AY.3.1noncoding28271A28271-noncoding282712827128271A-113490.967602
AY.3.1N63D63Gnonsyn284602846128462gAcgGc115080.981158
AY.3.1N203R203Mnonsyn288802888128882aGgaTg110880.945349
AY.3.1N215G215Cnonsyn289162891728918GgtTgt110320.940575
AY.3.1N259R259Rsyn290482904929050cgGcgA116660.994629
AY.3.1N377D377Ynonsyn294022940329404GatTat115260.982692
AY.3.1N412S412Ssyn295072950829509agCagT114640.977406
AY.3.1noncoding29742G29742Tnoncoding297422974229742GT66360.565777