CoV-GLUE | Mutations

CoV-GLUE Mutations: Lineage = AY.1

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Lineage: ORF: Mutation type: Min count: Min prop:


Lineage = AY.1 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5


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LineageORFCodonNumMutationORF1abMutTypeC1C2C3RefCodonMutCodonCountProportion
AY.1noncoding210G210Tnoncoding210210210GT24770.980214
AY.1noncoding241C241Tnoncoding241241241CT24880.984567
AY.1ORF1ab/nsp2489K489NK669Nnonsyn227022712272aaGaaC16380.648199
AY.1ORF1ab/nsp3106F106FF924Fsyn303530363037ttCttT25160.995647
AY.1ORF1ab/nsp3488A488SA1306Snonsyn418141824183GctTct25060.99169
AY.1ORF1ab/nsp31228P1228LP2046Lnonsyn640164026403cCacTa24840.982984
AY.1ORF1ab/nsp31469P1469SP2287Snonsyn712471257126CctTct23960.94816
AY.1ORF1ab/nsp31781S1781SS2599Ssyn806080618062tcAtcG16450.65097
AY.1ORF1ab/nsp4144D144DD2907Dsyn898489858986gaCgaT25100.993273
AY.1ORF1ab/nsp4167V167LV2930Lnonsyn905390549055GtaTta24980.988524
AY.1ORF1ab/nsp4492T492IT3255Inonsyn100281002910030aCcaTc25030.990503
AY.1ORF1ab/nsp677T77AT3646Anonsyn112011120211203ActGct25010.989711
AY.1ORF1ab/nsp6120V120VV3689Vsyn113301133111332gtAgtG24990.98892
AY.1ORF1ab/nsp12323P323LP4715Lnonsyn144071440814409cCtcTt25220.998021
AY.1ORF1ab/nsp12671G671SG5063Snonsyn154511545215453GgtAgt25170.996043
AY.1ORF1ab/nsp1377P77LP5401Lnonsyn164651646616467cCacTa25200.99723
AY.1ORF1ab/nsp14A2-B394A394VA6319Vnonsyn192191922019221gCtgTt24900.985358
AY.1ORF1ab/nsp15A1-B272D272DD6724Dsyn204342043520436gaCgaT16070.635932
AY.1S19T19Rnonsyn216172161821619aCaaGa24640.975069
AY.1S95T95Inonsyn218452184621847aCtaTt16450.65097
AY.1S142G142Dnonsyn219862198721988gGtgAt13230.523546
AY.1S156E156deldel220282202922030GAG---18670.738821
AY.1S157F157deldel220312203222033TTC---18740.741591
AY.1S158R158Gnonsyn220342203522036AgaGga18680.739216
AY.1S258W258Lnonsyn223342233522336tGgtTg22800.902256
AY.1S417K417Nnonsyn228112281222813aaGaaT25271
AY.1S452L452Rnonsyn229162291722918cTgcGg23500.929956
AY.1S478T478Knonsyn229942299522996aCaaAa23670.936684
AY.1S614D614Gnonsyn234022340323404gAtgGt25260.999604
AY.1S681P681Rnonsyn236032360423605cCtcGt25160.995647
AY.1S950D950Nnonsyn244102441124412GatAat23570.932727
AY.1ORF3a26S26Lnonsyn254682546925470tCatTa25200.99723
AY.1ORF3a53L53Fnonsyn255492555025551CttTtt16340.646617
AY.1M29L29Fnonsyn266072660826609CttTtt16480.652157
AY.1M82I82Tnonsyn267662676726768aTcaCc25271
AY.1ORF7a82V82Anonsyn276372763827639gTtgCt24220.958449
AY.1ORF7a120T120Inonsyn277512775227753aCaaTa24400.965572
AY.1ORF7b40T40Inonsyn278732787427875aCtaTt24970.988128
AY.1ORF8119D119deldel282482824928250GAT---23580.933122
AY.1ORF8120F120deldel282512825228253TTC---23630.935101
AY.1noncoding28271A28271-noncoding282712827128271A-24160.956074
AY.1N63D63Gnonsyn284602846128462gAcgGc25070.992085
AY.1N203R203Mnonsyn288802888128882aGgaTg25210.997626
AY.1N215G215Cnonsyn289162891728918GgtTgt25010.989711
AY.1N377D377Ynonsyn294022940329404GatTat24810.981797
AY.1noncoding29742G29742Tnoncoding297422974229742GT23880.944994