CoV-GLUE | Mutations

CoV-GLUE Mutations: Lineage = AT.1

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Lineage: ORF: Mutation type: Min count: Min prop:


Lineage = AT.1 ; ORF = All
Mutation Type = All ; Min count = 1 ; Min prop = 0.5


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LineageORFCodonNumMutationORF1abMutTypeC1C2C3RefCodonMutCodonCountProportion
AT.1noncoding241C241Tnoncoding241241241CT1880.964103
AT.1ORF1ab/nsp138V38VV38Vsyn377378379gtCgtA1250.641026
AT.1ORF1ab/nsp139L39KL39Knonsyn380381382TTaAAa1240.635897
AT.1ORF1ab/nsp2196S196LS376Lnonsyn139113921393tCatTa1770.907692
AT.1ORF1ab/nsp3106F106FF924Fsyn303530363037ttCttT1720.882051
AT.1ORF1ab/nsp3188V188FV1006Fnonsyn328132823283GttTtt1700.871795
AT.1ORF1ab/nsp3275T275AT1093Anonsyn354235433544ActGct1540.789744
AT.1ORF1ab/nsp3819T819TT1637Tsyn517451755176acAacG1730.887179
AT.1ORF1ab/nsp31429T1429NT2247Nnonsyn700470057006aCcaAc1660.851282
AT.1ORF1ab/nsp4172D172DD2935Dsyn906890699070gaTgaC1780.912821
AT.1ORF1ab/nsp4408S408SS3171Ssyn977697779778tcCtcT1760.902564
AT.1ORF1ab/nsp4492T492IT3255Inonsyn100281002910030aCcaTc1760.902564
AT.1ORF1ab/nsp6160Q160RQ3729Rnonsyn114501145111452cAacGa1730.887179
AT.1ORF1ab/nsp8177S177TS4119Tnonsyn126201262112622TcaAca1760.902564
AT.1ORF1ab/nsp946S46SS4186Ssyn128211282212823tcCtcT1260.646154
AT.1ORF1ab/nsp12199A199SA4591Snonsyn140351403614037GctTct1200.615385
AT.1ORF1ab/nsp12323P323LP4715Lnonsyn144071440814409cCtcTt1870.958974
AT.1ORF1ab/nsp13250T250NT5574Nnonsyn169841698516986aCtaAt1750.897436
AT.1ORF1ab/nsp13442R442RR5766Rsyn175601756117562cgGcgT1740.892308
AT.1ORF1ab/nsp14A2-B381V381LV6306Lnonsyn191801918119182GtaTta1780.912821
AT.1ORF1ab/nsp1634A34VA6832Vnonsyn207582075920760gCagTa1700.871795
AT.1S9P9Lnonsyn215872158821589cCacTa1780.912821
AT.1S136C136deldel219682196921970TGT---1590.815385
AT.1S137N137deldel219712197221973AAT---1600.820513
AT.1S138D138deldel219742197521976GAT---1600.820513
AT.1S139P139deldel219772197821979CCA---1600.820513
AT.1S140F140deldel219802198121982TTT---1600.820513
AT.1S141L141deldel219832198421985TTG---1600.820513
AT.1S142G142deldel219862198721988GGT---1600.820513
AT.1S143V143deldel219892199021991GTT---1600.820513
AT.1S144Y144deldel219922199321994TAT---1570.805128
AT.1S215D215Gnonsyn222052220622207gAtgGt1370.702564
AT.1S245H245Pnonsyn222952229622297cAtcCt1670.85641
AT.1S484E484Knonsyn230122301323014GaaAaa1650.846154
AT.1S614D614Gnonsyn234022340323404gAtgGt1920.984615
AT.1S780E780Knonsyn239002390123902GaaAaa1730.887179
AT.1S936D936Dsyn243682436924370gaCgaT1670.85641
AT.1S1146D1146Dsyn249982499925000gaCgaT1520.779487
AT.1ORF3a71L71Lsyn256032560425605CtaTta1510.774359
AT.1ORF3a95L95Mnonsyn256752567625677TtgAtg1620.830769
AT.1ORF3a273V273Vsyn262092621026211gtGgtT1520.779487
AT.1M16L16Inonsyn265682656926570CtcAtc1690.866667
AT.1ORF862V62Vsyn280772807828079gtGgtT1690.866667
AT.1noncoding28271A28271Gnoncoding282712827128271AG1920.984615
AT.1N203R203Knonsyn288802888128882aGGaAA1940.994872
AT.1N204G204Rnonsyn288832888428885GgaCga1951