CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : Mut = T29791C
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29791 | T29791C | noncoding | T | C | 1595 | 1595 | 1 | 29791-29791 |
Details of the mutation T29791C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29791 | T29791C | T | C | 1595 | 1595 | All | 0.000305 |
| noncoding | 29791 | T29791C | T | C | 375 | 375 | B.1.177.15 | 0.236593 |
| noncoding | 29791 | T29791C | T | C | 246 | 246 | AY.43 | 0.00109 |
| noncoding | 29791 | T29791C | T | C | 173 | 173 | B.1.617.2 | 0.000651 |
| noncoding | 29791 | T29791C | T | C | 130 | 130 | AA.2 | 1 |
| noncoding | 29791 | T29791C | T | C | 110 | 110 | AA.4 | 1 |
| noncoding | 29791 | T29791C | T | C | 91 | 91 | B.1.1.7 | 0.000081 |
| noncoding | 29791 | T29791C | T | C | 62 | 62 | AA.5 | 1 |
| noncoding | 29791 | T29791C | T | C | 62 | 62 | AA.6 | 1 |
| noncoding | 29791 | T29791C | T | C | 37 | 37 | AA.3 | 1 |
| noncoding | 29791 | T29791C | T | C | 33 | 33 | AY.4 | 0.000051 |
| noncoding | 29791 | T29791C | T | C | 21 | 21 | AY.44 | 0.000128 |
| noncoding | 29791 | T29791C | T | C | 17 | 17 | AY.39 | 0.00042 |
| noncoding | 29791 | T29791C | T | C | 13 | 13 | AY.119 | 0.000459 |
| noncoding | 29791 | T29791C | T | C | 13 | 13 | B.1.177 | 0.000171 |
| noncoding | 29791 | T29791C | T | C | 12 | 12 | AY.111 | 0.002198 |
| noncoding | 29791 | T29791C | T | C | 12 | 12 | AY.34 | 0.001164 |
| noncoding | 29791 | T29791C | T | C | 11 | 11 | B.1.351 | 0.000327 |
| noncoding | 29791 | T29791C | T | C | 10 | 10 | B.1.2 | 0.000088 |
| noncoding | 29791 | T29791C | T | C | 9 | 9 | AY.26 | 0.000255 |
| noncoding | 29791 | T29791C | T | C | 8 | 8 | P.1 | 0.000126 |
| noncoding | 29791 | T29791C | T | C | 7 | 7 | AY.103 | 0.000043 |
| noncoding | 29791 | T29791C | T | C | 7 | 7 | AY.25 | 0.000042 |
| noncoding | 29791 | T29791C | T | C | 7 | 7 | B.1 | 0.000064 |
| noncoding | 29791 | T29791C | T | C | 6 | 6 | AA.1 | 0.043478 |
| noncoding | 29791 | T29791C | T | C | 6 | 6 | AY.9.2 | 0.00022 |
| noncoding | 29791 | T29791C | T | C | 6 | 6 | B.1.1.519 | 0.000238 |
| noncoding | 29791 | T29791C | T | C | 5 | 5 | AY.98 | 0.000395 |
| noncoding | 29791 | T29791C | T | C | 5 | 5 | B.1.1.113 | 0.034965 |
| noncoding | 29791 | T29791C | T | C | 4 | 4 | AY.46 | 0.000416 |
| noncoding | 29791 | T29791C | T | C | 4 | 4 | AY.5.4 | 0.001107 |
| noncoding | 29791 | T29791C | T | C | 4 | 4 | B.1.1 | 0.000073 |
| noncoding | 29791 | T29791C | T | C | 4 | 4 | B.1.160 | 0.000125 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | AY.102 | 0.00008 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | AY.113 | 0.000427 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | AY.29 | 0.000047 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | B.1.427 | 0.000151 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | B.1.429 | 0.000071 |
| noncoding | 29791 | T29791C | T | C | 3 | 3 | C.37 | 0.000348 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | A.2.5 | 0.000998 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.106 | 0.00067 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.20 | 0.000078 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.30 | 0.000791 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.38 | 0.000999 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.53 | 0.000575 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.68 | 0.000547 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.75 | 0.000112 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | AY.9 | 0.000135 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | B | 0.000256 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | B.1.1.434 | 0.000697 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | B.1.177.31 | 0.022989 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | B.1.177.86 | 0.000367 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | B.1.258 | 0.000133 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | P.1.17 | 0.000324 |
| noncoding | 29791 | T29791C | T | C | 2 | 2 | P.1.7 | 0.000639 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AD.2 | 0.000219 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.100 | 0.000046 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.120 | 0.000037 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.121 | 0.000135 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.13 | 0.000161 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.23 | 0.00007 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.27 | 0.000065 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.32 | 0.000532 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.33 | 0.000067 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.40 | 0.000964 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.46.6 | 0.000072 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.51 | 0.000909 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.59 | 0.00053 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.67 | 0.000464 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.9.1 | 0.000084 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.90 | 0.000684 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | AY.98.1 | 0.000048 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.1.214 | 0.000055 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.1.222 | 0.000204 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.1.28 | 0.000311 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.1.49 | 0.017544 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.1.526 | 0.003546 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.177.17 | 0.000821 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.177.33 | 0.001645 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.177.54 | 0.000606 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.177.6 | 0.000977 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.177.65 | 0.000665 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.3 | 0.002618 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.36.16 | 0.001425 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.36.29 | 0.000517 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.402 | 0.009804 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.526 | 0.000024 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | B.1.596 | 0.000087 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | C.37.1 | 0.002618 |
| noncoding | 29791 | T29791C | T | C | 1 | 1 | N.5 | 0.001767 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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