CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = T29726-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29726T29726-noncodingT-58705870129726-29726

Details of the mutation T29726- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29726T29726-T-58705870All0.001123
noncoding29726T29726-T-11681168B.1.1.70.001046
noncoding29726T29726-T-10191019B.1.1.2980.878448
noncoding29726T29726-T-834834AY.380.416375
noncoding29726T29726-T-273273AY.50.005637
noncoding29726T29726-T-209209C.370.024257
noncoding29726T29726-T-197197AY.40.000307
noncoding29726T29726-T-197197B.1.5260.00463
noncoding29726T29726-T-9292B.1.4270.004646
noncoding29726T29726-T-8989B.1.20.000784
noncoding29726T29726-T-7878B.1.617.20.000294
noncoding29726T29726-T-7373B.10.000669
noncoding29726T29726-T-6969B.1.1770.000909
noncoding29726T29726-T-6868P.10.001071
noncoding29726T29726-T-6767B.1.10.001215
noncoding29726T29726-T-6464AY.440.00039
noncoding29726T29726-T-5757B.1.4160.072335
noncoding29726T29726-T-4545B.1.1.5190.001787
noncoding29726T29726-T-4040B.1.4290.000941
noncoding29726T29726-T-3939B.1.1.2140.002163
noncoding29726T29726-T-3636AY.290.000568
noncoding29726T29726-T-3636B.1.2430.002505
noncoding29726T29726-T-3535AY.250.000211
noncoding29726T29726-T-3535Q.10.004421
noncoding29726T29726-T-3030AY.1030.000186
noncoding29726T29726-T-3030B.1.1600.000936
noncoding29726T29726-T-2525B.1.2210.001776
noncoding29726T29726-T-2525N.100.735294
noncoding29726T29726-T-2323B.1.4040.029948
noncoding29726T29726-T-2323B.1.6370.001681
noncoding29726T29726-T-2121B.1.177.350.014513
noncoding29726T29726-T-2121P.1.140.001004
noncoding29726T29726-T-2020B.1.1.280.006225
noncoding29726T29726-T-2020B.1.1.460.087336
noncoding29726T29726-T-1919AY.920.005458
noncoding29726T29726-T-1818B.1.360.002626
noncoding29726T29726-T-1818C.36.30.01021
noncoding29726T29726-T-1717AY.430.000075
noncoding29726T29726-T-1717B.1.3690.004849
noncoding29726T29726-T-1717P.1.60.033074
noncoding29726T29726-T-1616AY.390.000395
noncoding29726T29726-T-1515B.1.3510.000446
noncoding29726T29726-T-1515P.20.0028
noncoding29726T29726-T-1313A.20.008604
noncoding29726T29726-T-1313B.1.1.330.005471
noncoding29726T29726-T-1212AY.30.000119
noncoding29726T29726-T-1212B.1.1.4160.01086
noncoding29726T29726-T-1111AY.1140.002542
noncoding29726T29726-T-1111B.1.1.4330.01567
noncoding29726T29726-T-1111C.360.010018
noncoding29726T29726-T-1010AY.260.000283
noncoding29726T29726-T-1010B.1.2580.000665
noncoding29726T29726-T-1010B.1.6210.000885
noncoding29726T29726-T-99AY.450.001095
noncoding29726T29726-T-99B.1.3980.026786
noncoding29726T29726-T-99N.40.038298
noncoding29726T29726-T-88AY.1060.002679
noncoding29726T29726-T-88B.1.4000.003432
noncoding29726T29726-T-77AY.470.000218
noncoding29726T29726-T-77AY.9.10.000586
noncoding29726T29726-T-77B0.000895
noncoding29726T29726-T-77B.1.1.1410.014085
noncoding29726T29726-T-77B.1.160.330.030973
noncoding29726T29726-T-77B.1.6300.036649
noncoding29726T29726-T-66AY.29.10.001323
noncoding29726T29726-T-66AY.750.000336
noncoding29726T29726-T-66B.1.1.2180.046154
noncoding29726T29726-T-66B.1.1.3330.006459
noncoding29726T29726-T-66B.1.2340.000792
noncoding29726T29726-T-66B.1.5950.001566
noncoding29726T29726-T-66B.1.595.10.035088
noncoding29726T29726-T-66B.1.80.011834
noncoding29726T29726-T-66C.130.153846
noncoding29726T29726-T-55AY.1000.00023
noncoding29726T29726-T-55AY.1020.000133
noncoding29726T29726-T-55AY.610.000524
noncoding29726T29726-T-55B.1.1.1210.012136
noncoding29726T29726-T-55B.1.177.210.000382
noncoding29726T29726-T-55B.1.258.170.00052
noncoding29726T29726-T-55B.1.4080.01845
noncoding29726T29726-T-55B.1.5610.001985
noncoding29726T29726-T-55P.1.150.001162
noncoding29726T29726-T-55P.1.70.001596
noncoding29726T29726-T-55P.30.007974
noncoding29726T29726-T-55P.70.021834
noncoding29726T29726-T-55R.10.00045
noncoding29726T29726-T-44AY.1190.000141
noncoding29726T29726-T-44AY.200.000155
noncoding29726T29726-T-44AY.4.20.000087
noncoding29726T29726-T-44AY.460.000416
noncoding29726T29726-T-44AY.650.002132
noncoding29726T29726-T-44AY.740.000463
noncoding29726T29726-T-44AY.9.20.000147
noncoding29726T29726-T-44AY.98.10.000194
noncoding29726T29726-T-44B.1.1.4640.005891
noncoding29726T29726-T-44B.1.177.810.000757
noncoding29726T29726-T-44B.1.4280.004082
noncoding29726T29726-T-44B.1.5250.000453
noncoding29726T29726-T-44B.1.617.10.000516
noncoding29726T29726-T-44P.1.160.001496
noncoding29726T29726-T-33A0.001161
noncoding29726T29726-T-33AY.1090.002219
noncoding29726T29726-T-33AY.140.000264
noncoding29726T29726-T-33AY.240.001293
noncoding29726T29726-T-33AY.360.000445
noncoding29726T29726-T-33AY.400.002893
noncoding29726T29726-T-33AY.420.000121
noncoding29726T29726-T-33AY.540.000286
noncoding29726T29726-T-33AY.590.001589
noncoding29726T29726-T-33AY.75.10.000541
noncoding29726T29726-T-33AY.980.000237
noncoding29726T29726-T-33B.1.1.10.00098
noncoding29726T29726-T-33B.1.1.1890.004539
noncoding29726T29726-T-33B.1.1.1920.006928
noncoding29726T29726-T-33B.1.1.2160.002671
noncoding29726T29726-T-33B.1.1.3060.001315
noncoding29726T29726-T-33B.1.1.3620.016854
noncoding29726T29726-T-33B.1.1.390.001529
noncoding29726T29726-T-33B.1.1.500.002037
noncoding29726T29726-T-33B.1.1450.157895
noncoding29726T29726-T-33B.1.177.620.003576
noncoding29726T29726-T-33B.1.2320.001612
noncoding29726T29726-T-33B.1.36.170.001482
noncoding29726T29726-T-33B.1.36.290.001552
noncoding29726T29726-T-33B.1.438.10.000322
noncoding29726T29726-T-33B.1.440.025
noncoding29726T29726-T-33B.1.4800.007463
noncoding29726T29726-T-33B.1.5820.001472
noncoding29726T29726-T-33B.1.5960.000261
noncoding29726T29726-T-33C.180.007772
noncoding29726T29726-T-33Q.40.001364
noncoding29726T29726-T-22A.10.000564
noncoding29726T29726-T-22AD.20.000438
noncoding29726T29726-T-22AY.1200.000074
noncoding29726T29726-T-22AY.16.10.00094
noncoding29726T29726-T-22AY.20.000712
noncoding29726T29726-T-22AY.3.10.000171
noncoding29726T29726-T-22AY.46.60.000144
noncoding29726T29726-T-22AY.5.30.000675
noncoding29726T29726-T-22AY.560.00321
noncoding29726T29726-T-22AY.710.00095
noncoding29726T29726-T-22AY.840.000875
noncoding29726T29726-T-22B.1.1.2220.000408
noncoding29726T29726-T-22B.1.1.3480.001592
noncoding29726T29726-T-22B.1.1.3540.008772
noncoding29726T29726-T-22B.1.1.3680.006173
noncoding29726T29726-T-22B.1.1.3760.011905
noncoding29726T29726-T-22B.1.1.3850.008929
noncoding29726T29726-T-22B.1.1.3890.012121
noncoding29726T29726-T-22B.1.1.4320.002532
noncoding29726T29726-T-22B.1.177.120.000303
noncoding29726T29726-T-22B.1.177.380.020833
noncoding29726T29726-T-22B.1.177.570.000562
noncoding29726T29726-T-22B.1.177.790.004684
noncoding29726T29726-T-22B.1.1800.1
noncoding29726T29726-T-22B.1.2060.001631
noncoding29726T29726-T-22B.1.2400.000431
noncoding29726T29726-T-22B.1.2410.001623
noncoding29726T29726-T-22B.1.2980.004228
noncoding29726T29726-T-22B.1.3050.004301
noncoding29726T29726-T-22B.1.36.250.004415
noncoding29726T29726-T-22B.1.36.310.003503
noncoding29726T29726-T-22B.1.36.80.002
noncoding29726T29726-T-22B.1.3960.001411
noncoding29726T29726-T-22B.1.4410.019231
noncoding29726T29726-T-22B.1.5170.000854
noncoding29726T29726-T-22B.390.004662
noncoding29726T29726-T-22C.37.10.005236
noncoding29726T29726-T-22P.1.120.000968
noncoding29726T29726-T-22Q.30.00029
noncoding29726T29726-T-11A.2.50.000499
noncoding29726T29726-T-11A.23.10.000704
noncoding29726T29726-T-11AH.30.003802
noncoding29726T29726-T-11AY.100.00053
noncoding29726T29726-T-11AY.1080.001103
noncoding29726T29726-T-11AY.1110.000183
noncoding29726T29726-T-11AY.1170.000085
noncoding29726T29726-T-11AY.120.2.10.000498
noncoding29726T29726-T-11AY.130.000161
noncoding29726T29726-T-11AY.160.00038
noncoding29726T29726-T-11AY.230.00007
noncoding29726T29726-T-11AY.330.000067
noncoding29726T29726-T-11AY.340.000097
noncoding29726T29726-T-11AY.39.10.00004
noncoding29726T29726-T-11AY.46.30.000934
noncoding29726T29726-T-11AY.46.50.000198
noncoding29726T29726-T-11AY.480.000465
noncoding29726T29726-T-11AY.5.40.000277
noncoding29726T29726-T-11AY.520.000814
noncoding29726T29726-T-11AY.620.000436
noncoding29726T29726-T-11AY.70.000196
noncoding29726T29726-T-11AY.810.001992
noncoding29726T29726-T-11AY.870.000833
noncoding29726T29726-T-11AY.890.004902
noncoding29726T29726-T-11AY.90.000068
noncoding29726T29726-T-11AY.910.00073
noncoding29726T29726-T-11AY.940.000443
noncoding29726T29726-T-11AY.99.20.000092
noncoding29726T29726-T-11AZ.50.003509
noncoding29726T29726-T-11B.1.1.1570.000913
noncoding29726T29726-T-11B.1.1.1610.003534
noncoding29726T29726-T-11B.1.1.1940.00495
noncoding29726T29726-T-11B.1.1.1970.037037
noncoding29726T29726-T-11B.1.1.2100.005714
noncoding29726T29726-T-11B.1.1.250.000569
noncoding29726T29726-T-11B.1.1.2770.000759
noncoding29726T29726-T-11B.1.1.2840.000107
noncoding29726T29726-T-11B.1.1.2880.001916
noncoding29726T29726-T-11B.1.1.3110.000358
noncoding29726T29726-T-11B.1.1.3120.001912
noncoding29726T29726-T-11B.1.1.3170.000412
noncoding29726T29726-T-11B.1.1.3180.000302
noncoding29726T29726-T-11B.1.1.3260.001761
noncoding29726T29726-T-11B.1.1.3630.005988
noncoding29726T29726-T-11B.1.1.370.000193
noncoding29726T29726-T-11B.1.1.3720.000689
noncoding29726T29726-T-11B.1.1.3740.002375
noncoding29726T29726-T-11B.1.1.4210.030303
noncoding29726T29726-T-11B.1.1.4340.000349
noncoding29726T29726-T-11B.1.1.440.00241
noncoding29726T29726-T-11B.1.1.470.005348
noncoding29726T29726-T-11B.1.1.5170.006803
noncoding29726T29726-T-11B.1.1.520.012195
noncoding29726T29726-T-11B.1.1.5210.005348
noncoding29726T29726-T-11B.1.1.5230.001563
noncoding29726T29726-T-11B.1.1.5260.003546
noncoding29726T29726-T-11B.1.1.5280.004808
noncoding29726T29726-T-11B.1.1.700.000341
noncoding29726T29726-T-11B.1.1.860.035714
noncoding29726T29726-T-11B.1.1.930.025641
noncoding29726T29726-T-11B.1.110.30.000718
noncoding29726T29726-T-11B.1.1110.001175
noncoding29726T29726-T-11B.1.1180.006711
noncoding29726T29726-T-11B.1.1200.007692
noncoding29726T29726-T-11B.1.1280.000635
noncoding29726T29726-T-11B.1.1390.000733
noncoding29726T29726-T-11B.1.160.220.006757
noncoding29726T29726-T-11B.1.160.300.002976
noncoding29726T29726-T-11B.1.160.320.004292
noncoding29726T29726-T-11B.1.177.320.00135
noncoding29726T29726-T-11B.1.177.450.000381
noncoding29726T29726-T-11B.1.177.600.000218
noncoding29726T29726-T-11B.1.1920.009259
noncoding29726T29726-T-11B.1.2100.002132
noncoding29726T29726-T-11B.1.214.10.02
noncoding29726T29726-T-11B.1.220.001318
noncoding29726T29726-T-11B.1.2220.001692
noncoding29726T29726-T-11B.1.258.160.001637
noncoding29726T29726-T-11B.1.258.90.005
noncoding29726T29726-T-11B.1.2910.019231
noncoding29726T29726-T-11B.1.3460.001311
noncoding29726T29726-T-11B.1.36.160.001425
noncoding29726T29726-T-11B.1.36.190.009259
noncoding29726T29726-T-11B.1.36.380.001642
noncoding29726T29726-T-11B.1.3800.006623
noncoding29726T29726-T-11B.1.3970.004854
noncoding29726T29726-T-11B.1.4430.004673
noncoding29726T29726-T-11B.1.4650.003802
noncoding29726T29726-T-11B.1.466.20.000391
noncoding29726T29726-T-11B.1.4710.002732
noncoding29726T29726-T-11B.1.4970.000315
noncoding29726T29726-T-11B.1.5090.000866
noncoding29726T29726-T-11B.1.5330.009615
noncoding29726T29726-T-11B.1.5640.000426
noncoding29726T29726-T-11B.1.564.10.001577
noncoding29726T29726-T-11B.1.5650.00081
noncoding29726T29726-T-11B.1.5660.019231
noncoding29726T29726-T-11B.1.5760.000907
noncoding29726T29726-T-11B.1.5880.00091
noncoding29726T29726-T-11B.1.5970.00463
noncoding29726T29726-T-11B.1.617.30.002985
noncoding29726T29726-T-11B.1.6200.000946
noncoding29726T29726-T-11B.1.6230.000536
noncoding29726T29726-T-11B.1.6280.000352
noncoding29726T29726-T-11B.1.9.40.006135
noncoding29726T29726-T-11B.1.910.002075
noncoding29726T29726-T-11B.310.003731
noncoding29726T29726-T-11B.60.00091
noncoding29726T29726-T-11C.10.002392
noncoding29726T29726-T-11C.220.071429
noncoding29726T29726-T-11D.20.000075
noncoding29726T29726-T-11N.50.001767
noncoding29726T29726-T-11P.1.170.000162
noncoding29726T29726-T-11P.1.20.001156
noncoding29726T29726-T-11P.60.003145
noncoding29726T29726-T-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.