CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : Mut = T29710C
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29710 | T29710C | noncoding | T | C | 8043 | 8043 | 1 | 29710-29710 |
Details of the mutation T29710C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29710 | T29710C | T | C | 8043 | 8043 | All | 0.001538 |
| noncoding | 29710 | T29710C | T | C | 7343 | 7343 | B.1.243 | 0.51096 |
| noncoding | 29710 | T29710C | T | C | 338 | 338 | B.1 | 0.003096 |
| noncoding | 29710 | T29710C | T | C | 46 | 46 | B.1.1.466 | 0.4 |
| noncoding | 29710 | T29710C | T | C | 33 | 33 | B.1.2 | 0.000291 |
| noncoding | 29710 | T29710C | T | C | 32 | 32 | B.1.399 | 0.061896 |
| noncoding | 29710 | T29710C | T | C | 30 | 30 | B.1.1.7 | 0.000027 |
| noncoding | 29710 | T29710C | T | C | 17 | 17 | B.1.1 | 0.000308 |
| noncoding | 29710 | T29710C | T | C | 16 | 16 | B.1.617.2 | 0.00006 |
| noncoding | 29710 | T29710C | T | C | 13 | 13 | AY.4 | 0.00002 |
| noncoding | 29710 | T29710C | T | C | 11 | 11 | AY.100 | 0.000506 |
| noncoding | 29710 | T29710C | T | C | 11 | 11 | AY.44 | 0.000067 |
| noncoding | 29710 | T29710C | T | C | 9 | 9 | B.1.596 | 0.000784 |
| noncoding | 29710 | T29710C | T | C | 7 | 7 | AY.25 | 0.000042 |
| noncoding | 29710 | T29710C | T | C | 7 | 7 | B.1.234 | 0.000924 |
| noncoding | 29710 | T29710C | T | C | 6 | 6 | AY.121 | 0.000812 |
| noncoding | 29710 | T29710C | T | C | 6 | 6 | B.1.241 | 0.00487 |
| noncoding | 29710 | T29710C | T | C | 6 | 6 | B.1.602 | 0.039216 |
| noncoding | 29710 | T29710C | T | C | 5 | 5 | B.1.351 | 0.000149 |
| noncoding | 29710 | T29710C | T | C | 5 | 5 | B.1.396 | 0.003529 |
| noncoding | 29710 | T29710C | T | C | 5 | 5 | B.1.429 | 0.000118 |
| noncoding | 29710 | T29710C | T | C | 5 | 5 | B.1.526 | 0.000118 |
| noncoding | 29710 | T29710C | T | C | 4 | 4 | AZ.2 | 0.003284 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | AY.103 | 0.000019 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | AY.23 | 0.000209 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | B | 0.000383 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | B.1.1.192 | 0.006928 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | B.1.160 | 0.000094 |
| noncoding | 29710 | T29710C | T | C | 3 | 3 | B.1.567 | 0.01 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | AY.33 | 0.000134 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | AY.41 | 0.000588 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | AZ.3 | 0.00304 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.139 | 0.001466 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.177.73 | 0.001133 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.199 | 0.008264 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.311 | 0.000549 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.369 | 0.00057 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.564 | 0.000852 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | B.1.78 | 0.017094 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | P.2 | 0.000373 |
| noncoding | 29710 | T29710C | T | C | 2 | 2 | R.1 | 0.00018 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.20 | 0.000039 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.23.1 | 0.000417 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.39 | 0.000025 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.42 | 0.00004 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.43 | 0.000004 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.46 | 0.000104 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.46.6 | 0.000072 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.53 | 0.000288 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.77 | 0.001127 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.98 | 0.000079 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | AY.99.2 | 0.000092 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.222 | 0.000204 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.28 | 0.000311 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.377 | 0.001381 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.432 | 0.001266 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.517 | 0.006803 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.519 | 0.00004 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.1.526 | 0.003546 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.111 | 0.001175 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.167 | 0.007812 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.169 | 0.014925 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.192 | 0.009259 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.206 | 0.000816 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.229 | 0.009709 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.247 | 0.014925 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.258 | 0.000067 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.306 | 0.005714 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.349 | 0.000715 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.36.34 | 0.021277 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.395 | 0.007042 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.427 | 0.00005 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.462 | 0.007246 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.466.2 | 0.000391 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.517 | 0.000427 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.545 | 0.014493 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.560 | 0.00463 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.561 | 0.000397 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.577 | 0.000687 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.582 | 0.000491 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.595 | 0.000261 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.612 | 0.002653 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.617.1 | 0.000129 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.631 | 0.003367 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | B.1.637 | 0.000073 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | P.1.10 | 0.000269 |
| noncoding | 29710 | T29710C | T | C | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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