CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29710 | T29710- | noncoding | T | - | 249 | 249 | 1 | 29710-29710 |
Details of the mutation T29710- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29710 | T29710- | T | - | 249 | 249 | All | 0.000048 |
noncoding | 29710 | T29710- | T | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29710 | T29710- | T | - | 17 | 17 | B.1.1.7 | 0.000015 |
noncoding | 29710 | T29710- | T | - | 15 | 15 | AY.4 | 0.000023 |
noncoding | 29710 | T29710- | T | - | 11 | 11 | AY.25 | 0.000066 |
noncoding | 29710 | T29710- | T | - | 10 | 10 | AY.29 | 0.000158 |
noncoding | 29710 | T29710- | T | - | 10 | 10 | AY.44 | 0.000061 |
noncoding | 29710 | T29710- | T | - | 9 | 9 | B.1.617.2 | 0.000034 |
noncoding | 29710 | T29710- | T | - | 8 | 8 | B.1 | 0.000073 |
noncoding | 29710 | T29710- | T | - | 7 | 7 | AY.3 | 0.00007 |
noncoding | 29710 | T29710- | T | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29710 | T29710- | T | - | 7 | 7 | B.1.2 | 0.000062 |
noncoding | 29710 | T29710- | T | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29710 | T29710- | T | - | 6 | 6 | AY.43 | 0.000027 |
noncoding | 29710 | T29710- | T | - | 6 | 6 | B.1.160.33 | 0.026549 |
noncoding | 29710 | T29710- | T | - | 5 | 5 | AY.39 | 0.000124 |
noncoding | 29710 | T29710- | T | - | 5 | 5 | B.1.1 | 0.000091 |
noncoding | 29710 | T29710- | T | - | 5 | 5 | B.1.177 | 0.000066 |
noncoding | 29710 | T29710- | T | - | 4 | 4 | AY.103 | 0.000025 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | AY.47 | 0.000093 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | B.1.1.194 | 0.014851 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29710 | T29710- | T | - | 3 | 3 | P.1 | 0.000047 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | A | 0.000774 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.34 | 0.000194 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | B | 0.000256 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29710 | T29710- | T | - | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29710 | T29710- | T | - | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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