CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 26497 | T26497C | noncoding | T | C | 1650 | 1650 | 1 | 26497-26497 |
Details of the mutation T26497C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 26497 | T26497C | T | C | 1650 | 1650 | All | 0.000316 |
noncoding | 26497 | T26497C | T | C | 274 | 274 | B.1.1.7 | 0.000245 |
noncoding | 26497 | T26497C | T | C | 269 | 269 | AY.4 | 0.000419 |
noncoding | 26497 | T26497C | T | C | 115 | 115 | B.1.617.2 | 0.000433 |
noncoding | 26497 | T26497C | T | C | 78 | 78 | AY.103 | 0.000484 |
noncoding | 26497 | T26497C | T | C | 54 | 54 | AY.102 | 0.001432 |
noncoding | 26497 | T26497C | T | C | 49 | 49 | AY.43 | 0.000217 |
noncoding | 26497 | T26497C | T | C | 47 | 47 | AY.3 | 0.000467 |
noncoding | 26497 | T26497C | T | C | 41 | 41 | AY.44 | 0.00025 |
noncoding | 26497 | T26497C | T | C | 41 | 41 | B.1.596 | 0.003573 |
noncoding | 26497 | T26497C | T | C | 40 | 40 | B.1.70 | 0.97561 |
noncoding | 26497 | T26497C | T | C | 38 | 38 | AY.25 | 0.000229 |
noncoding | 26497 | T26497C | T | C | 36 | 36 | B.1.1 | 0.000653 |
noncoding | 26497 | T26497C | T | C | 29 | 29 | B.1.621 | 0.002567 |
noncoding | 26497 | T26497C | T | C | 25 | 25 | B.1.526 | 0.000588 |
noncoding | 26497 | T26497C | T | C | 24 | 24 | AY.29 | 0.000379 |
noncoding | 26497 | T26497C | T | C | 23 | 23 | AY.5 | 0.000475 |
noncoding | 26497 | T26497C | T | C | 22 | 22 | AY.100 | 0.001012 |
noncoding | 26497 | T26497C | T | C | 22 | 22 | B.1.2 | 0.000194 |
noncoding | 26497 | T26497C | T | C | 20 | 20 | B.1 | 0.000183 |
noncoding | 26497 | T26497C | T | C | 20 | 20 | B.1.351 | 0.000595 |
noncoding | 26497 | T26497C | T | C | 18 | 18 | P.1 | 0.000284 |
noncoding | 26497 | T26497C | T | C | 16 | 16 | AY.118 | 0.001002 |
noncoding | 26497 | T26497C | T | C | 14 | 14 | AY.4.2 | 0.000304 |
noncoding | 26497 | T26497C | T | C | 14 | 14 | B.1.177 | 0.000184 |
noncoding | 26497 | T26497C | T | C | 13 | 13 | AY.20 | 0.000505 |
noncoding | 26497 | T26497C | T | C | 11 | 11 | B.1.517 | 0.004697 |
noncoding | 26497 | T26497C | T | C | 9 | 9 | B.1.429 | 0.000212 |
noncoding | 26497 | T26497C | T | C | 9 | 9 | B.1.575 | 0.002731 |
noncoding | 26497 | T26497C | T | C | 8 | 8 | AY.119 | 0.000282 |
noncoding | 26497 | T26497C | T | C | 8 | 8 | B.1.1.214 | 0.000444 |
noncoding | 26497 | T26497C | T | C | 8 | 8 | B.1.637 | 0.000585 |
noncoding | 26497 | T26497C | T | C | 7 | 7 | AY.121 | 0.000947 |
noncoding | 26497 | T26497C | T | C | 6 | 6 | AY.115 | 0.03125 |
noncoding | 26497 | T26497C | T | C | 6 | 6 | AY.5.2 | 0.014778 |
noncoding | 26497 | T26497C | T | C | 6 | 6 | B.1.177.86 | 0.001101 |
noncoding | 26497 | T26497C | T | C | 6 | 6 | B.1.258.17 | 0.000624 |
noncoding | 26497 | T26497C | T | C | 6 | 6 | P.2 | 0.00112 |
noncoding | 26497 | T26497C | T | C | 5 | 5 | AY.3.1 | 0.000426 |
noncoding | 26497 | T26497C | T | C | 5 | 5 | AY.39 | 0.000124 |
noncoding | 26497 | T26497C | T | C | 5 | 5 | B.1.1.519 | 0.000199 |
noncoding | 26497 | T26497C | T | C | 5 | 5 | P.1.14 | 0.000239 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | AY.111 | 0.000733 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | AY.23 | 0.000279 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | AY.54 | 0.000381 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | AY.9.2 | 0.000147 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | AY.98.1 | 0.000194 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 26497 | T26497C | T | C | 4 | 4 | R.1 | 0.00036 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.120.2.1 | 0.001495 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.33 | 0.0002 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.42 | 0.000121 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.46.5 | 0.000595 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.47 | 0.000093 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.61 | 0.000314 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.75.1 | 0.000541 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.95 | 0.002283 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | AY.99.2 | 0.000276 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | B.1.1.289 | 0.00625 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | B.1.625 | 0.007059 |
noncoding | 26497 | T26497C | T | C | 3 | 3 | P.1.17 | 0.000485 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.113 | 0.000285 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.116 | 0.000574 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.120 | 0.000074 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.14 | 0.000176 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.16.1 | 0.00094 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.46 | 0.000208 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.48 | 0.00093 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.49 | 0.00639 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.6 | 0.000082 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.75 | 0.000112 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.83 | 0.003448 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.9 | 0.000135 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | AY.98 | 0.000158 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.1.284 | 0.000215 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.1.369 | 0.000892 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.160.30 | 0.005952 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.367 | 0.001585 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.369 | 0.00057 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.389 | 0.002004 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | B.1.486 | 0.222222 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | D.2 | 0.00015 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | P.1.10 | 0.000539 |
noncoding | 26497 | T26497C | T | C | 2 | 2 | Q.8 | 0.00033 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | A | 0.000387 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | A.21 | 0.00277 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AE.3 | 0.032258 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AE.8 | 0.000489 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AU.3 | 0.00211 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.101 | 0.00049 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.107 | 0.000466 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.108 | 0.001103 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.109 | 0.00074 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.12 | 0.000316 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.13 | 0.000161 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.26 | 0.000028 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.27 | 0.000065 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.40 | 0.000964 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.53 | 0.000288 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.59 | 0.00053 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.68 | 0.000274 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.7 | 0.000196 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.7.2 | 0.000559 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.74 | 0.000116 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.86 | 0.00083 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.87 | 0.000833 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.89 | 0.004902 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.92 | 0.000287 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | AY.94 | 0.000443 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B | 0.000128 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.217 | 0.003636 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.227 | 0.004348 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.317 | 0.000412 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.1.450 | 0.034483 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.126 | 0.001276 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.128 | 0.000635 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.13 | 0.002375 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.157 | 0.002985 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.160.16 | 0.000929 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.160.26 | 0.002421 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.15 | 0.000631 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.5 | 0.001242 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.60 | 0.000218 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.319 | 0.003049 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.36.28 | 0.005747 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.36.35 | 0.002604 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.375 | 0.00082 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.377 | 0.004566 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.578 | 0.017857 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.599 | 0.00365 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.628 | 0.000352 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.88.1 | 0.004808 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.1.9.5 | 0.005682 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | B.29 | 0.003509 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | C.2 | 0.016129 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | C.37 | 0.000116 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | C.4 | 0.01 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | P.1.13 | 0.000898 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | P.1.16 | 0.000374 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 26497 | T26497C | T | C | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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