CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29825 | G29825T | noncoding | G | T | 3465 | 3465 | 1 | 29825-29825 |
Details of the mutation G29825T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29825 | G29825T | G | T | 3465 | 3465 | All | 0.000663 |
noncoding | 29825 | G29825T | G | T | 933 | 933 | B.1.232 | 0.501343 |
noncoding | 29825 | G29825T | G | T | 851 | 851 | AY.4 | 0.001325 |
noncoding | 29825 | G29825T | G | T | 497 | 497 | B.1.1.7 | 0.000445 |
noncoding | 29825 | G29825T | G | T | 125 | 125 | AY.5 | 0.002581 |
noncoding | 29825 | G29825T | G | T | 88 | 88 | B.1.617.2 | 0.000331 |
noncoding | 29825 | G29825T | G | T | 59 | 59 | B.1.221 | 0.004191 |
noncoding | 29825 | G29825T | G | T | 57 | 57 | B.1.177 | 0.000751 |
noncoding | 29825 | G29825T | G | T | 52 | 52 | B.1.429 | 0.001224 |
noncoding | 29825 | G29825T | G | T | 50 | 50 | AY.43 | 0.000222 |
noncoding | 29825 | G29825T | G | T | 49 | 49 | AY.25 | 0.000295 |
noncoding | 29825 | G29825T | G | T | 40 | 40 | AY.103 | 0.000248 |
noncoding | 29825 | G29825T | G | T | 33 | 33 | AY.53 | 0.009488 |
noncoding | 29825 | G29825T | G | T | 33 | 33 | B.1 | 0.000302 |
noncoding | 29825 | G29825T | G | T | 26 | 26 | AY.3 | 0.000259 |
noncoding | 29825 | G29825T | G | T | 26 | 26 | P.1 | 0.00041 |
noncoding | 29825 | G29825T | G | T | 23 | 23 | A.19 | 0.216981 |
noncoding | 29825 | G29825T | G | T | 23 | 23 | AY.75.1 | 0.004147 |
noncoding | 29825 | G29825T | G | T | 22 | 22 | AY.4.2 | 0.000477 |
noncoding | 29825 | G29825T | G | T | 22 | 22 | B.1.36.29 | 0.011381 |
noncoding | 29825 | G29825T | G | T | 21 | 21 | AY.44 | 0.000128 |
noncoding | 29825 | G29825T | G | T | 17 | 17 | AY.102 | 0.000451 |
noncoding | 29825 | G29825T | G | T | 17 | 17 | B.1.1.58 | 0.091398 |
noncoding | 29825 | G29825T | G | T | 17 | 17 | B.1.2 | 0.00015 |
noncoding | 29825 | G29825T | G | T | 17 | 17 | B.1.427 | 0.000858 |
noncoding | 29825 | G29825T | G | T | 15 | 15 | B.1.1 | 0.000272 |
noncoding | 29825 | G29825T | G | T | 14 | 14 | B.1.596 | 0.00122 |
noncoding | 29825 | G29825T | G | T | 13 | 13 | AY.120 | 0.000483 |
noncoding | 29825 | G29825T | G | T | 10 | 10 | AY.33 | 0.000668 |
noncoding | 29825 | G29825T | G | T | 10 | 10 | AY.45 | 0.001217 |
noncoding | 29825 | G29825T | G | T | 10 | 10 | B.1.1.222 | 0.00204 |
noncoding | 29825 | G29825T | G | T | 9 | 9 | AY.47 | 0.00028 |
noncoding | 29825 | G29825T | G | T | 9 | 9 | AY.75 | 0.000504 |
noncoding | 29825 | G29825T | G | T | 9 | 9 | B.1.1.519 | 0.000357 |
noncoding | 29825 | G29825T | G | T | 9 | 9 | B.1.617.1 | 0.001161 |
noncoding | 29825 | G29825T | G | T | 8 | 8 | AY.20 | 0.000311 |
noncoding | 29825 | G29825T | G | T | 8 | 8 | AY.46 | 0.000833 |
noncoding | 29825 | G29825T | G | T | 8 | 8 | AY.54 | 0.000763 |
noncoding | 29825 | G29825T | G | T | 8 | 8 | B.1.1.1 | 0.002614 |
noncoding | 29825 | G29825T | G | T | 8 | 8 | B.1.1.157 | 0.007306 |
noncoding | 29825 | G29825T | G | T | 7 | 7 | AY.100 | 0.000322 |
noncoding | 29825 | G29825T | G | T | 6 | 6 | AY.29 | 0.000095 |
noncoding | 29825 | G29825T | G | T | 6 | 6 | AY.34 | 0.000582 |
noncoding | 29825 | G29825T | G | T | 6 | 6 | AY.99.2 | 0.000553 |
noncoding | 29825 | G29825T | G | T | 6 | 6 | B.1.36 | 0.000875 |
noncoding | 29825 | G29825T | G | T | 6 | 6 | B.1.470 | 0.008427 |
noncoding | 29825 | G29825T | G | T | 5 | 5 | AY.111 | 0.000916 |
noncoding | 29825 | G29825T | G | T | 5 | 5 | AY.39 | 0.000124 |
noncoding | 29825 | G29825T | G | T | 5 | 5 | B.1.351 | 0.000149 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | AY.12 | 0.001264 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | B.1.1.306 | 0.001754 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | B.1.499.1 | 0.444444 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | B.1.525 | 0.000453 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | B.1.621 | 0.000354 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | C.36.3 | 0.002269 |
noncoding | 29825 | G29825T | G | T | 4 | 4 | P.1.14 | 0.000191 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | A.28 | 0.007937 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.119 | 0.000106 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.21 | 0.005693 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.38 | 0.001498 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.42 | 0.000121 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.46.2 | 0.001906 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.69 | 0.00056 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | AY.98.1 | 0.000145 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | B.1.1.315 | 0.025424 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | B.1.177.77 | 0.002179 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | B.1.637 | 0.000219 |
noncoding | 29825 | G29825T | G | T | 3 | 3 | C.37 | 0.000348 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | A.2.5 | 0.000998 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.116.1 | 0.000623 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.118 | 0.000125 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.14 | 0.000176 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.9 | 0.000135 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | AY.98 | 0.000158 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.1.25 | 0.001137 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.1.263 | 0.003115 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.1.302 | 0.004149 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.1.372 | 0.001377 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.1.397 | 0.004505 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.160.28 | 0.005848 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.177.10 | 0.001756 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.240 | 0.000431 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.459 | 0.008163 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | B.1.465 | 0.007605 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | C.33 | 0.117647 |
noncoding | 29825 | G29825T | G | T | 2 | 2 | P.2 | 0.000373 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.57 | 0.000656 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.9.2.1 | 0.001976 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.92 | 0.000287 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B | 0.000128 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.141 | 0.002012 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.153 | 0.001095 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.275 | 0.011236 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.285 | 0.006536 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.364 | 0.066667 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.377 | 0.001381 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.1.382 | 0.035714 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.128 | 0.000635 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.239 | 0.001221 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.247 | 0.014925 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.258.7 | 0.001912 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.3 | 0.002618 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.398 | 0.002976 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.571 | 0.009709 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | C.11 | 0.010638 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | C.14 | 0.004329 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29825 | G29825T | G | T | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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