CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29779T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29779G29779TnoncodingGT2334923349129779-29779

Details of the mutation G29779T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29779G29779TGT2334923349All0.004466
noncoding29779G29779TGT41414141B.1.617.20.015593
noncoding29779G29779TGT30133013B.1.1.70.002697
noncoding29779G29779TGT23562356B.1.4970.74158
noncoding29779G29779TGT21002100AY.430.009304
noncoding29779G29779TGT12461246AY.40.001939
noncoding29779G29779TGT11971197B.1.6210.105957
noncoding29779G29779TGT10831083B.1.3670.858162
noncoding29779G29779TGT10411041B.1.20.009166
noncoding29779G29779TGT675675B.1.3610.869845
noncoding29779G29779TGT662662AY.440.004029
noncoding29779G29779TGT439439AY.1030.002726
noncoding29779G29779TGT346346AY.250.002081
noncoding29779G29779TGT311311B.10.002849
noncoding29779G29779TGT302302AY.30.003004
noncoding29779G29779TGT291291B.1.4290.006847
noncoding29779G29779TGT276276AY.50.005699
noncoding29779G29779TGT181181D.20.013582
noncoding29779G29779TGT150150AY.390.003707
noncoding29779G29779TGT150150B.1.10.002721
noncoding29779G29779TGT137137AY.1020.003632
noncoding29779G29779TGT114114B.1.1770.001501
noncoding29779G29779TGT112112B.1.3060.64
noncoding29779G29779TGT9999B.1.1600.003088
noncoding29779G29779TGT9494P.1.140.004493
noncoding29779G29779TGT8888AY.350.020508
noncoding29779G29779TGT7171AY.260.00201
noncoding29779G29779TGT7070P.10.001103
noncoding29779G29779TGT6262AY.290.000978
noncoding29779G29779TGT5757B.1.4440.904762
noncoding29779G29779TGT5353AY.460.005516
noncoding29779G29779TGT5151C.36.30.028928
noncoding29779G29779TGT4545AY.540.004291
noncoding29779G29779TGT4444B.1.2430.003062
noncoding29779G29779TGT4343AY.1190.001518
noncoding29779G29779TGT4242B.1.3510.001249
noncoding29779G29779TGT4242C.360.038251
noncoding29779G29779TGT3838AY.980.003002
noncoding29779G29779TGT3838AY.98.10.00184
noncoding29779G29779TGT3838B.1.258.140.037255
noncoding29779G29779TGT3737AY.330.002471
noncoding29779G29779TGT3434AY.1130.004841
noncoding29779G29779TGT3333B.1.1.2270.143478
noncoding29779G29779TGT3232AY.200.001244
noncoding29779G29779TGT3131AY.120.10.009952
noncoding29779G29779TGT3030AY.1200.001115
noncoding29779G29779TGT3030AY.46.60.002166
noncoding29779G29779TGT3030B.1.177.860.005504
noncoding29779G29779TGT2929AY.4.20.000629
noncoding29779G29779TGT2828B.1.4270.001414
noncoding29779G29779TGT2727B.1.5170.011529
noncoding29779G29779TGT2626AY.99.20.002396
noncoding29779G29779TGT2626B.600.412698
noncoding29779G29779TGT2525AY.4.50.002687
noncoding29779G29779TGT2525B.1.5260.000588
noncoding29779G29779TGT2424AY.470.000747
noncoding29779G29779TGT2424B.1.36.80.024
noncoding29779G29779TGT2323A.290.12234
noncoding29779G29779TGT2323B.1.2580.001531
noncoding29779G29779TGT2222AY.230.001534
noncoding29779G29779TGT2222AY.5.40.006087
noncoding29779G29779TGT2121B.1.1.5190.000834
noncoding29779G29779TGT2121B.1.617.10.002708
noncoding29779G29779TGT2121Q.10.002653
noncoding29779G29779TGT2020AY.1140.004622
noncoding29779G29779TGT2020AY.450.002434
noncoding29779G29779TGT2020AY.750.00112
noncoding29779G29779TGT2020B.1.1.250.01137
noncoding29779G29779TGT2020B.1.1.700.006821
noncoding29779G29779TGT1919AY.1000.000874
noncoding29779G29779TGT1919AY.420.000764
noncoding29779G29779TGT1919B.1.5960.001656
noncoding29779G29779TGT1818B.1.1.2140.000998
noncoding29779G29779TGT1818B.1.221.20.072289
noncoding29779G29779TGT1818B.1.5760.016319
noncoding29779G29779TGT1717B.1.36.290.008795
noncoding29779G29779TGT1616AY.1110.00293
noncoding29779G29779TGT1616AY.990.016789
noncoding29779G29779TGT1616B.1.177.810.003029
noncoding29779G29779TGT1616B.1.2340.002111
noncoding29779G29779TGT1616C.370.001857
noncoding29779G29779TGT1515AY.1170.001268
noncoding29779G29779TGT1515AY.90.001014
noncoding29779G29779TGT1515B.1.177.730.008494
noncoding29779G29779TGT1414AY.520.011401
noncoding29779G29779TGT1414AY.60.000576
noncoding29779G29779TGT1414AY.610.001467
noncoding29779G29779TGT1414B0.001789
noncoding29779G29779TGT1313AY.1180.000814
noncoding29779G29779TGT1313AY.300.005144
noncoding29779G29779TGT1313AY.360.001927
noncoding29779G29779TGT1313B.1.1.10.004247
noncoding29779G29779TGT1212AZ.10.010408
noncoding29779G29779TGT1212B.1.1.2220.002448
noncoding29779G29779TGT1212B.1.1.3060.005261
noncoding29779G29779TGT1212B.1.5640.005111
noncoding29779G29779TGT1111AY.1160.003155
noncoding29779G29779TGT1111AY.120.003477
noncoding29779G29779TGT1111AY.340.001067
noncoding29779G29779TGT1111B.1.1.2630.017134
noncoding29779G29779TGT1111B.1.1.460.048035
noncoding29779G29779TGT1111B.1.1.5210.058824
noncoding29779G29779TGT1111B.1.1700.047414
noncoding29779G29779TGT1111B.1.177.600.002403
noncoding29779G29779TGT1111B.1.360.001605
noncoding29779G29779TGT1111B.1.5250.001245
noncoding29779G29779TGT1010A0.00387
noncoding29779G29779TGT1010AY.700.002085
noncoding29779G29779TGT1010B.1.160.230.048309
noncoding29779G29779TGT1010B.1.4060.060606
noncoding29779G29779TGT1010B.1.466.20.003912
noncoding29779G29779TGT1010P.1.70.003193
noncoding29779G29779TGT99AY.970.015306
noncoding29779G29779TGT99B.1.1.500.00611
noncoding29779G29779TGT99B.1.5610.003573
noncoding29779G29779TGT88AY.130.001288
noncoding29779G29779TGT88AY.140.000704
noncoding29779G29779TGT88AY.16.10.003759
noncoding29779G29779TGT88AY.46.40.001316
noncoding29779G29779TGT88AY.880.007073
noncoding29779G29779TGT88AY.9.20.000294
noncoding29779G29779TGT88B.1.1.2160.007124
noncoding29779G29779TGT88B.1.1.3180.002414
noncoding29779G29779TGT88B.1.160.170.013605
noncoding29779G29779TGT88B.1.4280.008163
noncoding29779G29779TGT88P.1.170.001294
noncoding29779G29779TGT77AY.1050.004502
noncoding29779G29779TGT77AY.1100.000789
noncoding29779G29779TGT77AY.5.30.002362
noncoding29779G29779TGT77AY.580.006352
noncoding29779G29779TGT77AY.720.009524
noncoding29779G29779TGT77AY.850.00299
noncoding29779G29779TGT77B.1.1.2690.009472
noncoding29779G29779TGT77B.1.1.330.002946
noncoding29779G29779TGT77B.1.2400.001509
noncoding29779G29779TGT77B.1.4710.019126
noncoding29779G29779TGT77B.1.5090.006061
noncoding29779G29779TGT77B.1.5750.002124
noncoding29779G29779TGT77B.1.621.10.003541
noncoding29779G29779TGT77P.1.150.001626
noncoding29779G29779TGT66A.270.009934
noncoding29779G29779TGT66AU.20.014528
noncoding29779G29779TGT66AY.220.012552
noncoding29779G29779TGT66AY.75.10.001082
noncoding29779G29779TGT66B.1.2210.000426
noncoding29779G29779TGT66B.1.3690.001711
noncoding29779G29779TGT66B.1.5800.02439
noncoding29779G29779TGT66B.1.6320.040268
noncoding29779G29779TGT55AY.710.002375
noncoding29779G29779TGT55AY.840.002187
noncoding29779G29779TGT55B.1.1.280.001556
noncoding29779G29779TGT55B.1.1.630.001929
noncoding29779G29779TGT55B.1.177.100.00439
noncoding29779G29779TGT55B.1.177.830.007407
noncoding29779G29779TGT55B.1.3110.001373
noncoding29779G29779TGT55B.1.5560.037594
noncoding29779G29779TGT55B.1.6090.002397
noncoding29779G29779TGT55B.1.6370.000365
noncoding29779G29779TGT55B.1.80.009862
noncoding29779G29779TGT55N.40.021277
noncoding29779G29779TGT55R.10.00045
noncoding29779G29779TGT44A.50.007692
noncoding29779G29779TGT44AY.1060.00134
noncoding29779G29779TGT44AY.1080.00441
noncoding29779G29779TGT44AY.1210.000541
noncoding29779G29779TGT44AY.240.001724
noncoding29779G29779TGT44AY.3.10.000341
noncoding29779G29779TGT44AY.39.10.000158
noncoding29779G29779TGT44AY.4.40.001637
noncoding29779G29779TGT44AY.480.00186
noncoding29779G29779TGT44AY.670.001857
noncoding29779G29779TGT44AY.890.019608
noncoding29779G29779TGT44AY.9.10.000335
noncoding29779G29779TGT44AZ.20.003284
noncoding29779G29779TGT44B.1.1.130.142857
noncoding29779G29779TGT44B.1.1.1700.004988
noncoding29779G29779TGT44B.1.1.2940.005063
noncoding29779G29779TGT44B.1.1.3010.004717
noncoding29779G29779TGT44B.1.1190.042105
noncoding29779G29779TGT44B.1.4620.028986
noncoding29779G29779TGT44B.1.5320.024845
noncoding29779G29779TGT44B.1.5820.001963
noncoding29779G29779TGT33AY.190.003421
noncoding29779G29779TGT33AY.20.001068
noncoding29779G29779TGT33AY.210.005693
noncoding29779G29779TGT33AY.270.000194
noncoding29779G29779TGT33AY.380.001498
noncoding29779G29779TGT33AY.4.2.10.000447
noncoding29779G29779TGT33AY.550.002752
noncoding29779G29779TGT33AY.760.014493
noncoding29779G29779TGT33AY.770.003382
noncoding29779G29779TGT33AY.910.002191
noncoding29779G29779TGT33AY.920.000862
noncoding29779G29779TGT33AY.99.10.004658
noncoding29779G29779TGT33B.1.1.1690.054545
noncoding29779G29779TGT33B.1.1.2210.030303
noncoding29779G29779TGT33B.1.1.2340.036145
noncoding29779G29779TGT33B.1.1.3170.001235
noncoding29779G29779TGT33B.1.1.3250.076923
noncoding29779G29779TGT33B.1.1.3260.005282
noncoding29779G29779TGT33B.1.1.3350.038961
noncoding29779G29779TGT33B.1.1.370.000579
noncoding29779G29779TGT33B.1.1110.003525
noncoding29779G29779TGT33B.1.1570.008955
noncoding29779G29779TGT33B.1.1790.011278
noncoding29779G29779TGT33B.1.4990.003151
noncoding29779G29779TGT33B.1.5950.000783
noncoding29779G29779TGT33B.1.6200.002838
noncoding29779G29779TGT33B.1.6230.001609
noncoding29779G29779TGT33B.400.001093
noncoding29779G29779TGT33P.1.120.001452
noncoding29779G29779TGT22A.10.000564
noncoding29779G29779TGT22AE.80.000978
noncoding29779G29779TGT22AY.10.000791
noncoding29779G29779TGT22AY.1040.003968
noncoding29779G29779TGT22AY.1070.000932
noncoding29779G29779TGT22AY.1090.001479
noncoding29779G29779TGT22AY.320.001065
noncoding29779G29779TGT22AY.34.10.00102
noncoding29779G29779TGT22AY.500.001599
noncoding29779G29779TGT22AY.530.000575
noncoding29779G29779TGT22AY.560.00321
noncoding29779G29779TGT22AY.590.001059
noncoding29779G29779TGT22AY.7.10.000225
noncoding29779G29779TGT22AY.870.001665
noncoding29779G29779TGT22AY.940.000885
noncoding29779G29779TGT22AY.950.001522
noncoding29779G29779TGT22AY.960.004149
noncoding29779G29779TGT22B.1.1.1110.029412
noncoding29779G29779TGT22B.1.1.1380.012121
noncoding29779G29779TGT22B.1.1.1760.000879
noncoding29779G29779TGT22B.1.1.1920.004619
noncoding29779G29779TGT22B.1.1.2580.006515
noncoding29779G29779TGT22B.1.1.3430.041667
noncoding29779G29779TGT22B.1.1.3560.017094
noncoding29779G29779TGT22B.1.1.3720.001377
noncoding29779G29779TGT22B.1.1.3740.004751
noncoding29779G29779TGT22B.1.1.3750.02381
noncoding29779G29779TGT22B.1.1.4340.000697
noncoding29779G29779TGT22B.1.1.510.003436
noncoding29779G29779TGT22B.1.1.5280.009615
noncoding29779G29779TGT22B.1.1080.011628
noncoding29779G29779TGT22B.1.177.210.000153
noncoding29779G29779TGT22B.1.177.60.001953
noncoding29779G29779TGT22B.1.214.30.014286
noncoding29779G29779TGT22B.1.2390.002442
noncoding29779G29779TGT22B.1.258.170.000208
noncoding29779G29779TGT22B.1.258.30.00335
noncoding29779G29779TGT22B.1.3490.00143
noncoding29779G29779TGT22B.1.36.10.002281
noncoding29779G29779TGT22B.1.3890.002004
noncoding29779G29779TGT22B.1.3960.001411
noncoding29779G29779TGT22B.1.4700.002809
noncoding29779G29779TGT22B.1.5230.004902
noncoding29779G29779TGT22B.1.5600.009259
noncoding29779G29779TGT22B.1.5770.001375
noncoding29779G29779TGT22B.1.5970.009259
noncoding29779G29779TGT22B.1.6100.007092
noncoding29779G29779TGT22B.1.6190.001742
noncoding29779G29779TGT22B.1.619.10.001283
noncoding29779G29779TGT22B.1.6250.004706
noncoding29779G29779TGT22B.1.6280.000705
noncoding29779G29779TGT22B.1.780.017094
noncoding29779G29779TGT22B.4.50.02381
noncoding29779G29779TGT22C.230.011628
noncoding29779G29779TGT22P.1.110.020408
noncoding29779G29779TGT22Q.20.001227
noncoding29779G29779TGT22Q.40.00091
noncoding29779G29779TGT11A.150.015873
noncoding29779G29779TGT11A.20.000662
noncoding29779G29779TGT11A.2.50.000499
noncoding29779G29779TGT11AC.10.037037
noncoding29779G29779TGT11AU.10.001266
noncoding29779G29779TGT11AY.116.10.000311
noncoding29779G29779TGT11AY.23.10.000417
noncoding29779G29779TGT11AY.370.000316
noncoding29779G29779TGT11AY.400.000964
noncoding29779G29779TGT11AY.410.000294
noncoding29779G29779TGT11AY.46.10.001027
noncoding29779G29779TGT11AY.46.20.000635
noncoding29779G29779TGT11AY.490.003195
noncoding29779G29779TGT11AY.570.000656
noncoding29779G29779TGT11AY.630.000387
noncoding29779G29779TGT11AY.640.000595
noncoding29779G29779TGT11AY.650.000533
noncoding29779G29779TGT11AY.690.000187
noncoding29779G29779TGT11AY.740.000116
noncoding29779G29779TGT11AY.780.001541
noncoding29779G29779TGT11AY.80.000606
noncoding29779G29779TGT11AY.860.00083
noncoding29779G29779TGT11AY.900.000684
noncoding29779G29779TGT11B.1.1.1100.090909
noncoding29779G29779TGT11B.1.1.1520.04
noncoding29779G29779TGT11B.1.1.1610.003534
noncoding29779G29779TGT11B.1.1.1630.007634
noncoding29779G29779TGT11B.1.1.2070.001182
noncoding29779G29779TGT11B.1.1.2190.005
noncoding29779G29779TGT11B.1.1.2280.003049
noncoding29779G29779TGT11B.1.1.2300.009174
noncoding29779G29779TGT11B.1.1.2540.011236
noncoding29779G29779TGT11B.1.1.270.00565
noncoding29779G29779TGT11B.1.1.2770.000759
noncoding29779G29779TGT11B.1.1.2820.011628
noncoding29779G29779TGT11B.1.1.3090.005848
noncoding29779G29779TGT11B.1.1.3110.000358
noncoding29779G29779TGT11B.1.1.3220.008772
noncoding29779G29779TGT11B.1.1.3330.001076
noncoding29779G29779TGT11B.1.1.3440.010753
noncoding29779G29779TGT11B.1.1.3680.003086
noncoding29779G29779TGT11B.1.1.3700.012658
noncoding29779G29779TGT11B.1.1.3880.045455
noncoding29779G29779TGT11B.1.1.3970.002252
noncoding29779G29779TGT11B.1.1.4020.011111
noncoding29779G29779TGT11B.1.1.4090.002833
noncoding29779G29779TGT11B.1.1.4200.001006
noncoding29779G29779TGT11B.1.1.450.014085
noncoding29779G29779TGT11B.1.1.4620.008621
noncoding29779G29779TGT11B.1.1.520.012195
noncoding29779G29779TGT11B.1.1120.005181
noncoding29779G29779TGT11B.1.1260.001276
noncoding29779G29779TGT11B.1.160.280.002924
noncoding29779G29779TGT11B.1.177.120.000152
noncoding29779G29779TGT11B.1.177.40.000211
noncoding29779G29779TGT11B.1.177.420.000894
noncoding29779G29779TGT11B.1.177.440.000519
noncoding29779G29779TGT11B.1.177.540.000606
noncoding29779G29779TGT11B.1.177.570.000281
noncoding29779G29779TGT11B.1.177.630.002703
noncoding29779G29779TGT11B.1.177.650.000665
noncoding29779G29779TGT11B.1.177.70.000165
noncoding29779G29779TGT11B.1.1990.004132
noncoding29779G29779TGT11B.1.2060.000816
noncoding29779G29779TGT11B.1.214.20.0006
noncoding29779G29779TGT11B.1.3240.001605
noncoding29779G29779TGT11B.1.351.20.000303
noncoding29779G29779TGT11B.1.351.30.000876
noncoding29779G29779TGT11B.1.351.50.0006
noncoding29779G29779TGT11B.1.3560.001727
noncoding29779G29779TGT11B.1.36.100.004785
noncoding29779G29779TGT11B.1.36.180.00042
noncoding29779G29779TGT11B.1.36.220.001208
noncoding29779G29779TGT11B.1.36.240.006173
noncoding29779G29779TGT11B.1.36.70.004
noncoding29779G29779TGT11B.1.3750.00082
noncoding29779G29779TGT11B.1.3800.006623
noncoding29779G29779TGT11B.1.3820.008929
noncoding29779G29779TGT11B.1.3900.010638
noncoding29779G29779TGT11B.1.3990.001934
noncoding29779G29779TGT11B.1.4260.001009
noncoding29779G29779TGT11B.1.4340.052632
noncoding29779G29779TGT11B.1.4380.006536
noncoding29779G29779TGT11B.1.4430.004673
noncoding29779G29779TGT11B.1.4590.004082
noncoding29779G29779TGT11B.1.4680.005714
noncoding29779G29779TGT11B.1.4800.002488
noncoding29779G29779TGT11B.1.4920.007042
noncoding29779G29779TGT11B.1.5150.014493
noncoding29779G29779TGT11B.1.5380.008065
noncoding29779G29779TGT11B.1.5510.00129
noncoding29779G29779TGT11B.1.5620.018519
noncoding29779G29779TGT11B.1.5680.001111
noncoding29779G29779TGT11B.1.6020.006536
noncoding29779G29779TGT11B.1.6110.04
noncoding29779G29779TGT11B.1.6130.027027
noncoding29779G29779TGT11B.1.930.000934
noncoding29779G29779TGT11B.100.008264
noncoding29779G29779TGT11B.4.10.018868
noncoding29779G29779TGT11B.550.00295
noncoding29779G29779TGT11B.60.00091
noncoding29779G29779TGT11B.6.60.000889
noncoding29779G29779TGT11B.610.005747
noncoding29779G29779TGT11C.160.00106
noncoding29779G29779TGT11C.350.000774
noncoding29779G29779TGT11C.36.3.10.002717
noncoding29779G29779TGT11C.37.10.002618
noncoding29779G29779TGT11D.30.005917
noncoding29779G29779TGT11N.10.016949
noncoding29779G29779TGT11N.30.005814
noncoding29779G29779TGT11N.50.001767
noncoding29779G29779TGT11N.90.005952
noncoding29779G29779TGT11P.1.10.000318
noncoding29779G29779TGT11P.1.100.000269
noncoding29779G29779TGT11P.1.40.000977
noncoding29779G29779TGT11P.20.000187
noncoding29779G29779TGT11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.