CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29779 | G29779- | noncoding | G | - | 1990 | 1990 | 1 | 29779-29779 |
Details of the mutation G29779- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29779 | G29779- | G | - | 1990 | 1990 | All | 0.000381 |
noncoding | 29779 | G29779- | G | - | 1391 | 1391 | B.1.1.7 | 0.001245 |
noncoding | 29779 | G29779- | G | - | 48 | 48 | B.1.617.2 | 0.000181 |
noncoding | 29779 | G29779- | G | - | 37 | 37 | B.1.160 | 0.001154 |
noncoding | 29779 | G29779- | G | - | 36 | 36 | B.1.1.351 | 0.100559 |
noncoding | 29779 | G29779- | G | - | 19 | 19 | AY.44 | 0.000116 |
noncoding | 29779 | G29779- | G | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29779 | G29779- | G | - | 18 | 18 | AY.4 | 0.000028 |
noncoding | 29779 | G29779- | G | - | 18 | 18 | B.1.1.519 | 0.000715 |
noncoding | 29779 | G29779- | G | - | 17 | 17 | AY.99.2 | 0.001567 |
noncoding | 29779 | G29779- | G | - | 17 | 17 | B.1 | 0.000156 |
noncoding | 29779 | G29779- | G | - | 15 | 15 | AY.25 | 0.00009 |
noncoding | 29779 | G29779- | G | - | 15 | 15 | B.1.1 | 0.000272 |
noncoding | 29779 | G29779- | G | - | 14 | 14 | B.1.2 | 0.000123 |
noncoding | 29779 | G29779- | G | - | 13 | 13 | B.1.351 | 0.000386 |
noncoding | 29779 | G29779- | G | - | 12 | 12 | B.1.258 | 0.000799 |
noncoding | 29779 | G29779- | G | - | 10 | 10 | B.1.177.86 | 0.001835 |
noncoding | 29779 | G29779- | G | - | 10 | 10 | P.1 | 0.000158 |
noncoding | 29779 | G29779- | G | - | 9 | 9 | AY.29 | 0.000142 |
noncoding | 29779 | G29779- | G | - | 9 | 9 | AY.61 | 0.000943 |
noncoding | 29779 | G29779- | G | - | 9 | 9 | B.1.525 | 0.001018 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | AY.103 | 0.00005 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | AY.47 | 0.000249 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | B.1.1.317 | 0.003294 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | C.37.1 | 0.020942 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | P.1.16 | 0.002993 |
noncoding | 29779 | G29779- | G | - | 8 | 8 | P.1.17 | 0.001294 |
noncoding | 29779 | G29779- | G | - | 7 | 7 | AY.3 | 0.00007 |
noncoding | 29779 | G29779- | G | - | 7 | 7 | AY.39 | 0.000173 |
noncoding | 29779 | G29779- | G | - | 7 | 7 | B.1.221 | 0.000497 |
noncoding | 29779 | G29779- | G | - | 6 | 6 | AY.119 | 0.000212 |
noncoding | 29779 | G29779- | G | - | 6 | 6 | B.1.1.214 | 0.000333 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | AY.43 | 0.000022 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | B.1.177 | 0.000066 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | B.1.243 | 0.000348 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | B.1.619 | 0.004355 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29779 | G29779- | G | - | 5 | 5 | Q.1 | 0.000632 |
noncoding | 29779 | G29779- | G | - | 4 | 4 | B.1.429 | 0.000094 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.23 | 0.000209 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.5 | 0.000062 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.54 | 0.000286 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.70 | 0.000626 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | B.1.1.311 | 0.001074 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | B.1.1.46 | 0.0131 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | B.1.526 | 0.000071 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 29779 | G29779- | G | - | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | A | 0.000774 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.117 | 0.000169 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.118 | 0.000125 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.46.2 | 0.001271 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.46.4 | 0.000329 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.75.1 | 0.000361 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.95 | 0.001522 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B | 0.000256 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.1.1.523 | 0.003125 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.1.177.33 | 0.003289 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29779 | G29779- | G | - | 2 | 2 | P.2 | 0.000373 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.30 | 0.000396 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.110 | 0.004525 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.160.33 | 0.004425 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.177.79 | 0.002342 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.466.1 | 0.007194 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | C.36 | 0.000911 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | N.4 | 0.004255 |
noncoding | 29779 | G29779- | G | - | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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