CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29778 | G29778T | noncoding | G | T | 1965 | 1965 | 1 | 29778-29778 |
Details of the mutation G29778T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29778 | G29778T | G | T | 1965 | 1965 | All | 0.000376 |
noncoding | 29778 | G29778T | G | T | 529 | 529 | B.1.160 | 0.016498 |
noncoding | 29778 | G29778T | G | T | 408 | 408 | B.1.617.2 | 0.001536 |
noncoding | 29778 | G29778T | G | T | 297 | 297 | AY.4 | 0.000462 |
noncoding | 29778 | G29778T | G | T | 156 | 156 | P.1.15 | 0.036245 |
noncoding | 29778 | G29778T | G | T | 108 | 108 | B.1.1.7 | 0.000097 |
noncoding | 29778 | G29778T | G | T | 49 | 49 | AY.118 | 0.00307 |
noncoding | 29778 | G29778T | G | T | 38 | 38 | AY.5.4 | 0.010515 |
noncoding | 29778 | G29778T | G | T | 24 | 24 | AY.34 | 0.002327 |
noncoding | 29778 | G29778T | G | T | 18 | 18 | AY.103 | 0.000112 |
noncoding | 29778 | G29778T | G | T | 18 | 18 | B.1 | 0.000165 |
noncoding | 29778 | G29778T | G | T | 17 | 17 | B.1.617.1 | 0.002192 |
noncoding | 29778 | G29778T | G | T | 16 | 16 | AY.43 | 0.000071 |
noncoding | 29778 | G29778T | G | T | 15 | 15 | AY.66 | 0.016043 |
noncoding | 29778 | G29778T | G | T | 14 | 14 | AY.48 | 0.006512 |
noncoding | 29778 | G29778T | G | T | 12 | 12 | AY.39 | 0.000297 |
noncoding | 29778 | G29778T | G | T | 11 | 11 | AY.102 | 0.000292 |
noncoding | 29778 | G29778T | G | T | 10 | 10 | AY.26 | 0.000283 |
noncoding | 29778 | G29778T | G | T | 10 | 10 | AY.5 | 0.000206 |
noncoding | 29778 | G29778T | G | T | 9 | 9 | AY.44 | 0.000055 |
noncoding | 29778 | G29778T | G | T | 8 | 8 | AY.20 | 0.000311 |
noncoding | 29778 | G29778T | G | T | 8 | 8 | AY.47 | 0.000249 |
noncoding | 29778 | G29778T | G | T | 7 | 7 | AY.106 | 0.002344 |
noncoding | 29778 | G29778T | G | T | 7 | 7 | AY.33 | 0.000467 |
noncoding | 29778 | G29778T | G | T | 7 | 7 | B.1.1 | 0.000127 |
noncoding | 29778 | G29778T | G | T | 7 | 7 | P.1 | 0.00011 |
noncoding | 29778 | G29778T | G | T | 6 | 6 | AY.25 | 0.000036 |
noncoding | 29778 | G29778T | G | T | 6 | 6 | AY.29 | 0.000095 |
noncoding | 29778 | G29778T | G | T | 6 | 6 | B.1.1.519 | 0.000238 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | AY.3 | 0.00005 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | AY.45 | 0.000608 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | AY.61 | 0.000524 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | AY.91 | 0.003652 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | B.1.1.214 | 0.000277 |
noncoding | 29778 | G29778T | G | T | 5 | 5 | B.1.1.306 | 0.002192 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | AY.46.6 | 0.000289 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | AY.69 | 0.000747 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | B.1.177.60 | 0.000874 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | B.1.351 | 0.000119 |
noncoding | 29778 | G29778T | G | T | 4 | 4 | B.1.526 | 0.000094 |
noncoding | 29778 | G29778T | G | T | 3 | 3 | AY.75 | 0.000168 |
noncoding | 29778 | G29778T | G | T | 3 | 3 | B.1.1.284 | 0.000322 |
noncoding | 29778 | G29778T | G | T | 3 | 3 | B.1.243 | 0.000209 |
noncoding | 29778 | G29778T | G | T | 3 | 3 | R.1 | 0.00027 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | AY.120 | 0.000074 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | AY.46 | 0.000208 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | AY.71 | 0.00095 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.1.219 | 0.01 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.1.301 | 0.002358 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | C.37 | 0.000232 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | N.9 | 0.011905 |
noncoding | 29778 | G29778T | G | T | 2 | 2 | P.1.10 | 0.000539 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.109 | 0.00074 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.46.1 | 0.001027 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.46.5 | 0.000198 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.82 | 0.001357 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.93 | 0.000273 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.96 | 0.002075 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B | 0.000128 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.1.326 | 0.001761 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.1.405 | 0.083333 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.157 | 0.002985 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.177.8 | 0.000752 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.36.18 | 0.00042 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.426 | 0.001009 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.448 | 0.002625 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.471 | 0.002732 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.567 | 0.003333 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | C.16 | 0.00106 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | C.2 | 0.016129 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | C.35 | 0.000774 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | P.2 | 0.000187 |
noncoding | 29778 | G29778T | G | T | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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