CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29766T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29766G29766TnoncodingGT11641164129766-29766

Details of the mutation G29766T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29766G29766TGT11641164All0.000223
noncoding29766G29766TGT367367B.1.177.760.915212
noncoding29766G29766TGT191191B.1.1.70.000171
noncoding29766G29766TGT5959AY.570.038714
noncoding29766G29766TGT5151AY.1030.000317
noncoding29766G29766TGT4545AY.430.000199
noncoding29766G29766TGT4343B.1.617.20.000162
noncoding29766G29766TGT3535B.1.1770.000461
noncoding29766G29766TGT2323B.10.000211
noncoding29766G29766TGT2222B.1.2210.001563
noncoding29766G29766TGT1616AY.40.000025
noncoding29766G29766TGT1616AY.440.000097
noncoding29766G29766TGT1515Q.30.002175
noncoding29766G29766TGT1414B.1.1600.000437
noncoding29766G29766TGT1212B.1.20.000106
noncoding29766G29766TGT1111B.1.177.40.002322
noncoding29766G29766TGT1111P.20.002053
noncoding29766G29766TGT1010P.1.20.011561
noncoding29766G29766TGT99B.1.1.2220.001836
noncoding29766G29766TGT88AY.1020.000212
noncoding29766G29766TGT88B.1.10.000145
noncoding29766G29766TGT88B.1.2650.010165
noncoding29766G29766TGT88B.1.4290.000188
noncoding29766G29766TGT88C.160.008484
noncoding29766G29766TGT88P.10.000126
noncoding29766G29766TGT77B.1.1.5190.000278
noncoding29766G29766TGT66AY.200.000233
noncoding29766G29766TGT66B.1.5250.000679
noncoding29766G29766TGT66B.1.5580.027397
noncoding29766G29766TGT55AY.4.30.004209
noncoding29766G29766TGT55B.1.1.2690.006766
noncoding29766G29766TGT55B.1.2580.000333
noncoding29766G29766TGT55B.1.5410.022124
noncoding29766G29766TGT55C.370.00058
noncoding29766G29766TGT44AY.290.000063
noncoding29766G29766TGT44AY.30.00004
noncoding29766G29766TGT44B.1.258.170.000416
noncoding29766G29766TGT44B.1.3110.001098
noncoding29766G29766TGT44B.1.5090.003463
noncoding29766G29766TGT44P.1.140.000191
noncoding29766G29766TGT33AD.20.000657
noncoding29766G29766TGT33AY.1180.000188
noncoding29766G29766TGT33AY.330.0002
noncoding29766G29766TGT33AY.50.000062
noncoding29766G29766TGT33C.36.30.001702
noncoding29766G29766TGT33P.1.40.00293
noncoding29766G29766TGT22AY.1070.000932
noncoding29766G29766TGT22AY.1190.000071
noncoding29766G29766TGT22AY.240.000862
noncoding29766G29766TGT22AY.250.000012
noncoding29766G29766TGT22AY.300.000791
noncoding29766G29766TGT22AY.340.000194
noncoding29766G29766TGT22AY.420.00008
noncoding29766G29766TGT22AY.60.000082
noncoding29766G29766TGT22B.1.1.2070.002364
noncoding29766G29766TGT22B.1.1.700.000682
noncoding29766G29766TGT22B.1.177.150.001262
noncoding29766G29766TGT22B.1.177.600.000437
noncoding29766G29766TGT22B.1.177.90.002663
noncoding29766G29766TGT22B.1.360.000292
noncoding29766G29766TGT22B.1.36.290.001035
noncoding29766G29766TGT22B.1.4270.000101
noncoding29766G29766TGT22B.1.6370.000146
noncoding29766G29766TGT11AY.1080.001103
noncoding29766G29766TGT11AY.1170.000085
noncoding29766G29766TGT11AY.210.001898
noncoding29766G29766TGT11AY.370.000316
noncoding29766G29766TGT11AY.4.20.000022
noncoding29766G29766TGT11AY.4.50.000107
noncoding29766G29766TGT11AY.400.000964
noncoding29766G29766TGT11AY.46.20.000635
noncoding29766G29766TGT11AY.530.000288
noncoding29766G29766TGT11AY.640.000595
noncoding29766G29766TGT11AY.690.000187
noncoding29766G29766TGT11AY.700.000209
noncoding29766G29766TGT11AY.730.000665
noncoding29766G29766TGT11AY.740.000116
noncoding29766G29766TGT11AY.750.000056
noncoding29766G29766TGT11B.1.1.280.000311
noncoding29766G29766TGT11B.1.1.290.010309
noncoding29766G29766TGT11B.1.1.330.000421
noncoding29766G29766TGT11B.1.1.3880.045455
noncoding29766G29766TGT11B.1.1.4190.007407
noncoding29766G29766TGT11B.1.1.4330.001425
noncoding29766G29766TGT11B.1.1420.002899
noncoding29766G29766TGT11B.1.177.170.000821
noncoding29766G29766TGT11B.1.177.330.001645
noncoding29766G29766TGT11B.1.177.500.004695
noncoding29766G29766TGT11B.1.3510.00003
noncoding29766G29766TGT11B.1.36.350.002604
noncoding29766G29766TGT11B.1.4240.008065
noncoding29766G29766TGT11B.1.438.10.000107
noncoding29766G29766TGT11B.1.5370.02
noncoding29766G29766TGT11B.1.5600.00463
noncoding29766G29766TGT11B.1.6090.000479
noncoding29766G29766TGT11B.1.6210.000089
noncoding29766G29766TGT11B.1.6230.000536
noncoding29766G29766TGT11B.1.6280.000352
noncoding29766G29766TGT11B.60.00091
noncoding29766G29766TGT11D.20.000075
noncoding29766G29766TGT11P.1.10.000318
noncoding29766G29766TGT11P.1.70.000319
noncoding29766G29766TGT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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