CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29766-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29766G29766-noncodingG-1461314613129766-29766

Details of the mutation G29766- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29766G29766-G-1461314613All0.002795
noncoding29766G29766-G-37133713B.1.5250.420165
noncoding29766G29766-G-17621762B.1.1.3110.631089
noncoding29766G29766-G-14961496AY.40.002328
noncoding29766G29766-G-14581458B.1.1.70.001305
noncoding29766G29766-G-11621162AY.260.032896
noncoding29766G29766-G-828828AY.380.41338
noncoding29766G29766-G-443443B.1.617.20.001668
noncoding29766G29766-G-290290B.1.20.002554
noncoding29766G29766-G-271271AY.50.005596
noncoding29766G29766-G-238238AY.250.001432
noncoding29766G29766-G-201201B.10.001841
noncoding29766G29766-G-166166AY.1030.001031
noncoding29766G29766-G-117117P.10.001843
noncoding29766G29766-G-116116AY.430.000514
noncoding29766G29766-G-101101B.1.10.001832
noncoding29766G29766-G-9696AY.730.063872
noncoding29766G29766-G-9494B.1.2210.006677
noncoding29766G29766-G-9090AY.470.002799
noncoding29766G29766-G-8383B.1.1770.001093
noncoding29766G29766-G-8181B.1.2430.005636
noncoding29766G29766-G-7373AY.30.000726
noncoding29766G29766-G-6464B.1.1600.001996
noncoding29766G29766-G-5959AY.1110.010806
noncoding29766G29766-G-5858B.1.1.5190.002303
noncoding29766G29766-G-5151AY.440.00031
noncoding29766G29766-G-4747B.1.3510.001397
noncoding29766G29766-G-4646C.160.04878
noncoding29766G29766-G-4343C.370.004991
noncoding29766G29766-G-3939AY.390.000964
noncoding29766G29766-G-3636B.1.1.3510.100559
noncoding29766G29766-G-3131B.1.4290.000729
noncoding29766G29766-G-2828AY.290.000442
noncoding29766G29766-G-2828B.1.5260.000658
noncoding29766G29766-G-2727B.1.3460.035387
noncoding29766G29766-G-2424AY.1020.000636
noncoding29766G29766-G-2222B.1.1.3680.067901
noncoding29766G29766-G-2121B.1.3050.045161
noncoding29766G29766-G-1919AY.920.005458
noncoding29766G29766-G-1818AY.200.0007
noncoding29766G29766-G-1818AY.420.000724
noncoding29766G29766-G-1818B.1.2580.001198
noncoding29766G29766-G-1717AY.5.40.004704
noncoding29766G29766-G-1717AY.60.000699
noncoding29766G29766-G-1717B.1.1.280.005291
noncoding29766G29766-G-1616AY.75.10.002885
noncoding29766G29766-G-1616B.1.36.190.148148
noncoding29766G29766-G-1414AY.1000.000644
noncoding29766G29766-G-1414AY.1200.000521
noncoding29766G29766-G-1414AY.610.001467
noncoding29766G29766-G-1414B.1.1.4340.00488
noncoding29766G29766-G-1414B.1.2400.003018
noncoding29766G29766-G-1414B.1.4040.018229
noncoding29766G29766-G-1414B.1.5960.00122
noncoding29766G29766-G-1313AY.1190.000459
noncoding29766G29766-G-1313B.1.1.2220.002652
noncoding29766G29766-G-1313B.1.1.4200.013078
noncoding29766G29766-G-1313B.1.5810.122642
noncoding29766G29766-G-1313B.1.6210.001151
noncoding29766G29766-G-1212AY.4.20.00026
noncoding29766G29766-G-1212AY.90.000811
noncoding29766G29766-G-1212B.1.1.4160.01086
noncoding29766G29766-G-1212B.1.177.750.012487
noncoding29766G29766-G-1212B.1.360.001751
noncoding29766G29766-G-1111AY.1180.000689
noncoding29766G29766-G-1111AY.450.001339
noncoding29766G29766-G-1111B.1.1.2140.00061
noncoding29766G29766-G-1111B.1.36.290.005691
noncoding29766G29766-G-1010AY.1170.000845
noncoding29766G29766-G-1010AY.740.001156
noncoding29766G29766-G-1010AY.750.00056
noncoding29766G29766-G-1010B.1.4270.000505
noncoding29766G29766-G-99B.1.1.3180.002716
noncoding29766G29766-G-99B.1.160.140.019068
noncoding29766G29766-G-99B.1.5990.032847
noncoding29766G29766-G-99D.20.000675
noncoding29766G29766-G-88AY.230.000558
noncoding29766G29766-G-88AY.850.003417
noncoding29766G29766-G-88AY.9.20.000294
noncoding29766G29766-G-88AY.98.10.000387
noncoding29766G29766-G-88B.1.1.3030.022099
noncoding29766G29766-G-88B.1.1.330.003367
noncoding29766G29766-G-88B.1.2340.001056
noncoding29766G29766-G-88B.1.6230.004292
noncoding29766G29766-G-88P.1.140.000382
noncoding29766G29766-G-77AY.1140.001618
noncoding29766G29766-G-77AY.46.50.001389
noncoding29766G29766-G-77B.1.1.3170.002882
noncoding29766G29766-G-77B.1.36.220.008454
noncoding29766G29766-G-66AY.140.000528
noncoding29766G29766-G-66AY.340.000582
noncoding29766G29766-G-66AY.460.000624
noncoding29766G29766-G-66AY.46.40.000987
noncoding29766G29766-G-66B0.000767
noncoding29766G29766-G-66B.1.1.3160.00555
noncoding29766G29766-G-66B.1.110.30.00431
noncoding29766G29766-G-66B.1.177.820.002864
noncoding29766G29766-G-66B.1.2410.00487
noncoding29766G29766-G-66B.1.36.310.010508
noncoding29766G29766-G-66B.1.5950.001566
noncoding29766G29766-G-66P.1.160.002245
noncoding29766G29766-G-55A0.001935
noncoding29766G29766-G-55AY.1130.000712
noncoding29766G29766-G-55AY.300.001979
noncoding29766G29766-G-55AY.350.001165
noncoding29766G29766-G-55AY.540.000477
noncoding29766G29766-G-55AY.980.000395
noncoding29766G29766-G-55B.1.1.2310.01548
noncoding29766G29766-G-55B.1.258.170.00052
noncoding29766G29766-G-55B.1.5750.001517
noncoding29766G29766-G-44AY.120.001264
noncoding29766G29766-G-44AY.590.002119
noncoding29766G29766-G-44AY.650.002132
noncoding29766G29766-G-44AY.690.000747
noncoding29766G29766-G-44B.1.1.10.001307
noncoding29766G29766-G-44B.1.1.1290.036697
noncoding29766G29766-G-44B.1.1.2980.003448
noncoding29766G29766-G-44B.1.1.3060.001754
noncoding29766G29766-G-44B.1.1.4640.005891
noncoding29766G29766-G-44B.1.1.500.002716
noncoding29766G29766-G-44B.1.1040.01476
noncoding29766G29766-G-44B.1.160.330.017699
noncoding29766G29766-G-44B.1.3110.001098
noncoding29766G29766-G-44B.1.5820.001963
noncoding29766G29766-G-44B.1.6090.001918
noncoding29766G29766-G-44C.10.009569
noncoding29766G29766-G-44P.20.000747
noncoding29766G29766-G-33A.2.50.001497
noncoding29766G29766-G-33AY.1090.002219
noncoding29766G29766-G-33AY.130.000483
noncoding29766G29766-G-33AY.240.001293
noncoding29766G29766-G-33AY.3.10.000256
noncoding29766G29766-G-33AY.400.002893
noncoding29766G29766-G-33AY.46.60.000217
noncoding29766G29766-G-33AY.620.001307
noncoding29766G29766-G-33AY.70.000588
noncoding29766G29766-G-33AY.700.000626
noncoding29766G29766-G-33AY.840.001312
noncoding29766G29766-G-33AY.99.20.000276
noncoding29766G29766-G-33B.1.1.1700.003741
noncoding29766G29766-G-33B.1.1.1920.006928
noncoding29766G29766-G-33B.1.1.2360.02069
noncoding29766G29766-G-33B.1.1.370.000579
noncoding29766G29766-G-33B.1.1.4280.028302
noncoding29766G29766-G-33B.1.1.4320.003797
noncoding29766G29766-G-33B.1.1.460.0131
noncoding29766G29766-G-33B.1.1.5280.014423
noncoding29766G29766-G-33B.1.1450.157895
noncoding29766G29766-G-33B.1.177.210.000229
noncoding29766G29766-G-33B.1.177.570.000843
noncoding29766G29766-G-33B.1.177.860.00055
noncoding29766G29766-G-33B.1.2100.006397
noncoding29766G29766-G-33B.1.214.20.001799
noncoding29766G29766-G-33B.1.36.160.004274
noncoding29766G29766-G-33B.1.4000.001287
noncoding29766G29766-G-33B.1.416.10.004687
noncoding29766G29766-G-33B.1.440.025
noncoding29766G29766-G-33B.1.5900.013636
noncoding29766G29766-G-33B.1.6370.000219
noncoding29766G29766-G-33B.1.9.40.018405
noncoding29766G29766-G-33B.1.910.006224
noncoding29766G29766-G-33N.50.0053
noncoding29766G29766-G-33P.1.150.000697
noncoding29766G29766-G-33Q.10.000379
noncoding29766G29766-G-33Q.30.000435
noncoding29766G29766-G-33R.10.00027
noncoding29766G29766-G-22AY.1050.001286
noncoding29766G29766-G-22AY.1060.00067
noncoding29766G29766-G-22AY.1100.000225
noncoding29766G29766-G-22AY.160.000759
noncoding29766G29766-G-22AY.190.002281
noncoding29766G29766-G-22AY.330.000134
noncoding29766G29766-G-22AY.360.000296
noncoding29766G29766-G-22AY.39.10.000079
noncoding29766G29766-G-22AY.46.30.001867
noncoding29766G29766-G-22AY.5.30.000675
noncoding29766G29766-G-22AY.520.001629
noncoding29766G29766-G-22AY.560.00321
noncoding29766G29766-G-22AY.950.001522
noncoding29766G29766-G-22AZ.20.001642
noncoding29766G29766-G-22AZ.40.006711
noncoding29766G29766-G-22B.1.1.1720.036364
noncoding29766G29766-G-22B.1.1.1740.006757
noncoding29766G29766-G-22B.1.1.2160.001781
noncoding29766G29766-G-22B.1.1.2320.00363
noncoding29766G29766-G-22B.1.1.2790.002242
noncoding29766G29766-G-22B.1.1.2940.002532
noncoding29766G29766-G-22B.1.1.3480.001592
noncoding29766G29766-G-22B.1.1.3540.008772
noncoding29766G29766-G-22B.1.1.390.001019
noncoding29766G29766-G-22B.1.177.120.000303
noncoding29766G29766-G-22B.1.177.440.001038
noncoding29766G29766-G-22B.1.177.540.001213
noncoding29766G29766-G-22B.1.177.650.001331
noncoding29766G29766-G-22B.1.2060.001631
noncoding29766G29766-G-22B.1.258.30.00335
noncoding29766G29766-G-22B.1.2980.004228
noncoding29766G29766-G-22B.1.351.30.001753
noncoding29766G29766-G-22B.1.36.170.000988
noncoding29766G29766-G-22B.1.36.80.002
noncoding29766G29766-G-22B.1.3960.001411
noncoding29766G29766-G-22B.1.4360.002058
noncoding29766G29766-G-22B.1.4410.019231
noncoding29766G29766-G-22B.1.5410.00885
noncoding29766G29766-G-22B.1.564.10.003155
noncoding29766G29766-G-22B.1.5650.001621
noncoding29766G29766-G-22B.1.5880.00182
noncoding29766G29766-G-22B.1.617.10.000258
noncoding29766G29766-G-22B.310.007463
noncoding29766G29766-G-22B.390.004662
noncoding29766G29766-G-22B.400.000729
noncoding29766G29766-G-22C.30.015267
noncoding29766G29766-G-22C.36.30.001134
noncoding29766G29766-G-22C.380.016129
noncoding29766G29766-G-22P.1.130.001797
noncoding29766G29766-G-22P.1.170.000324
noncoding29766G29766-G-11AD.20.000219
noncoding29766G29766-G-11AK.20.045455
noncoding29766G29766-G-11AY.100.00053
noncoding29766G29766-G-11AY.1160.000287
noncoding29766G29766-G-11AY.120.10.000321
noncoding29766G29766-G-11AY.270.000065
noncoding29766G29766-G-11AY.29.10.000221
noncoding29766G29766-G-11AY.4.2.10.000149
noncoding29766G29766-G-11AY.480.000465
noncoding29766G29766-G-11AY.510.000909
noncoding29766G29766-G-11AY.550.000917
noncoding29766G29766-G-11AY.670.000464
noncoding29766G29766-G-11AY.800.001129
noncoding29766G29766-G-11AY.810.001992
noncoding29766G29766-G-11AY.870.000833
noncoding29766G29766-G-11AY.9.10.000084
noncoding29766G29766-G-11B.1.1.100.001115
noncoding29766G29766-G-11B.1.1.1390.022727
noncoding29766G29766-G-11B.1.1.1660.033333
noncoding29766G29766-G-11B.1.1.1890.001513
noncoding29766G29766-G-11B.1.1.1960.005714
noncoding29766G29766-G-11B.1.1.1970.037037
noncoding29766G29766-G-11B.1.1.2180.007692
noncoding29766G29766-G-11B.1.1.2290.005747
noncoding29766G29766-G-11B.1.1.250.000569
noncoding29766G29766-G-11B.1.1.2650.003155
noncoding29766G29766-G-11B.1.1.2740.005051
noncoding29766G29766-G-11B.1.1.2770.000759
noncoding29766G29766-G-11B.1.1.2860.002899
noncoding29766G29766-G-11B.1.1.3370.003597
noncoding29766G29766-G-11B.1.1.3530.020833
noncoding29766G29766-G-11B.1.1.4090.002833
noncoding29766G29766-G-11B.1.1.5170.006803
noncoding29766G29766-G-11B.1.1.530.013699
noncoding29766G29766-G-11B.1.1.540.003021
noncoding29766G29766-G-11B.1.1.630.000386
noncoding29766G29766-G-11B.1.1.750.010638
noncoding29766G29766-G-11B.1.1.990.02381
noncoding29766G29766-G-11B.1.1100.004525
noncoding29766G29766-G-11B.1.1110.001175
noncoding29766G29766-G-11B.1.1190.010526
noncoding29766G29766-G-11B.1.160.160.000929
noncoding29766G29766-G-11B.1.160.260.002421
noncoding29766G29766-G-11B.1.160.320.004292
noncoding29766G29766-G-11B.1.177.110.001698
noncoding29766G29766-G-11B.1.177.320.00135
noncoding29766G29766-G-11B.1.177.40.000211
noncoding29766G29766-G-11B.1.177.420.000894
noncoding29766G29766-G-11B.1.177.60.000977
noncoding29766G29766-G-11B.1.177.70.000165
noncoding29766G29766-G-11B.1.177.760.002494
noncoding29766G29766-G-11B.1.177.770.000726
noncoding29766G29766-G-11B.1.177.790.002342
noncoding29766G29766-G-11B.1.177.810.000189
noncoding29766G29766-G-11B.1.177.850.005435
noncoding29766G29766-G-11B.1.177.870.000728
noncoding29766G29766-G-11B.1.1780.02381
noncoding29766G29766-G-11B.1.1800.05
noncoding29766G29766-G-11B.1.1920.009259
noncoding29766G29766-G-11B.1.2220.001692
noncoding29766G29766-G-11B.1.258.240.010753
noncoding29766G29766-G-11B.1.2910.019231
noncoding29766G29766-G-11B.1.3290.000608
noncoding29766G29766-G-11B.1.351.20.000303
noncoding29766G29766-G-11B.1.36.180.00042
noncoding29766G29766-G-11B.1.36.260.002857
noncoding29766G29766-G-11B.1.3610.001289
noncoding29766G29766-G-11B.1.3670.000792
noncoding29766G29766-G-11B.1.4080.00369
noncoding29766G29766-G-11B.1.4090.000781
noncoding29766G29766-G-11B.1.4160.001269
noncoding29766G29766-G-11B.1.4200.010417
noncoding29766G29766-G-11B.1.429.10.012048
noncoding29766G29766-G-11B.1.4460.02
noncoding29766G29766-G-11B.1.466.10.007194
noncoding29766G29766-G-11B.1.4700.001404
noncoding29766G29766-G-11B.1.5060.02381
noncoding29766G29766-G-11B.1.5090.000866
noncoding29766G29766-G-11B.1.5240.001406
noncoding29766G29766-G-11B.1.5610.000397
noncoding29766G29766-G-11B.1.5760.000907
noncoding29766G29766-G-11B.1.595.10.005848
noncoding29766G29766-G-11B.1.6000.005848
noncoding29766G29766-G-11B.1.617.30.002985
noncoding29766G29766-G-11B.1.619.10.000641
noncoding29766G29766-G-11B.1.6200.000946
noncoding29766G29766-G-11B.1.6270.00202
noncoding29766G29766-G-11B.1.6280.000352
noncoding29766G29766-G-11B.1.6300.005236
noncoding29766G29766-G-11B.1.810.021277
noncoding29766G29766-G-11B.1.9.50.005682
noncoding29766G29766-G-11B.270.015385
noncoding29766G29766-G-11B.3.10.001658
noncoding29766G29766-G-11B.4.50.011905
noncoding29766G29766-G-11B.550.00295
noncoding29766G29766-G-11B.60.00091
noncoding29766G29766-G-11C.300.001727
noncoding29766G29766-G-11C.350.000774
noncoding29766G29766-G-11C.37.10.002618
noncoding29766G29766-G-11L.30.003546
noncoding29766G29766-G-11P.1.100.000269
noncoding29766G29766-G-11P.1.120.000484
noncoding29766G29766-G-11P.1.40.000977
noncoding29766G29766-G-11P.1.70.000319
noncoding29766G29766-G-11P.30.001595
noncoding29766G29766-G-11P.60.003145
noncoding29766G29766-G-11P.70.004367
noncoding29766G29766-G-11U.30.003861
noncoding29766G29766-G-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.