CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29734T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29734G29734TnoncodingGT97449744129734-29734

Details of the mutation G29734T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29734G29734TGT97449744All0.001864
noncoding29734G29734TGT29002900AY.40.004514
noncoding29734G29734TGT21442144B.1.1.70.001919
noncoding29734G29734TGT399399B.1.617.20.001502
noncoding29734G29734TGT261261B.1.2580.017369
noncoding29734G29734TGT234234U.30.903475
noncoding29734G29734TGT219219AY.250.001317
noncoding29734G29734TGT212212AY.200.008239
noncoding29734G29734TGT198198AY.430.000877
noncoding29734G29734TGT177177AY.1030.001099
noncoding29734G29734TGT154154AY.1190.005437
noncoding29734G29734TGT134134AY.440.000816
noncoding29734G29734TGT129129B.1.20.001136
noncoding29734G29734TGT108108AY.660.115508
noncoding29734G29734TGT107107AY.30.001064
noncoding29734G29734TGT9595P.10.001497
noncoding29734G29734TGT9090AY.60.003702
noncoding29734G29734TGT8686B.10.000788
noncoding29734G29734TGT8383B.1.10.001506
noncoding29734G29734TGT8181B.1.6280.028541
noncoding29734G29734TGT7979AY.260.002237
noncoding29734G29734TGT6969AY.4.20.001497
noncoding29734G29734TGT6060AY.1020.001591
noncoding29734G29734TGT6060B.1.258.110.023781
noncoding29734G29734TGT5656AY.50.001156
noncoding29734G29734TGT5555B.1.3510.001635
noncoding29734G29734TGT5555B.1.617.10.007093
noncoding29734G29734TGT5151AY.330.003406
noncoding29734G29734TGT4747B.1.1.5190.001866
noncoding29734G29734TGT4444B.1.2210.003125
noncoding29734G29734TGT4343B.1.360.006274
noncoding29734G29734TGT3939B.1.4290.000918
noncoding29734G29734TGT3838B.1.258.170.003951
noncoding29734G29734TGT3535AY.390.000865
noncoding29734G29734TGT3434AY.450.004137
noncoding29734G29734TGT3232AY.1050.020579
noncoding29734G29734TGT3232B.1.1.10.010454
noncoding29734G29734TGT3131AY.290.000489
noncoding29734G29734TGT3030B.1.1600.000936
noncoding29734G29734TGT2929AY.1200.001078
noncoding29734G29734TGT2727B.1.1770.000356
noncoding29734G29734TGT2424AY.1060.008038
noncoding29734G29734TGT2323B.1.36.290.011899
noncoding29734G29734TGT2121AY.1000.000966
noncoding29734G29734TGT2121AY.4.2.10.003129
noncoding29734G29734TGT2121B.1.6090.010067
noncoding29734G29734TGT2020AY.420.000805
noncoding29734G29734TGT2020B.1.4800.049751
noncoding29734G29734TGT2020Q.10.002527
noncoding29734G29734TGT2020Q.80.003298
noncoding29734G29734TGT1818AY.5.30.006073
noncoding29734G29734TGT1818B.1.6210.001593
noncoding29734G29734TGT1818C.370.002089
noncoding29734G29734TGT1717AY.850.007262
noncoding29734G29734TGT1717AY.98.10.000823
noncoding29734G29734TGT1717B.1.2430.001183
noncoding29734G29734TGT1616AY.980.001264
noncoding29734G29734TGT1616P.1.140.000765
noncoding29734G29734TGT1515AY.640.008929
noncoding29734G29734TGT1515B.1.4270.000757
noncoding29734G29734TGT1414AY.1170.001183
noncoding29734G29734TGT1414AY.1210.001894
noncoding29734G29734TGT1313AY.9.20.000477
noncoding29734G29734TGT1212AY.20.004274
noncoding29734G29734TGT1212AY.470.000373
noncoding29734G29734TGT1212B.1.1.4170.032432
noncoding29734G29734TGT1212B.1.5260.000282
noncoding29734G29734TGT1212D.20.0009
noncoding29734G29734TGT1111AY.610.001153
noncoding29734G29734TGT1111AY.9.10.000921
noncoding29734G29734TGT1111B.1.438.10.00118
noncoding29734G29734TGT1010AY.1180.000626
noncoding29734G29734TGT1010AY.230.000697
noncoding29734G29734TGT99AY.360.001334
noncoding29734G29734TGT99AY.460.000937
noncoding29734G29734TGT99B.1.2340.001187
noncoding29734G29734TGT99B.1.5960.000784
noncoding29734G29734TGT88AY.650.004264
noncoding29734G29734TGT88AY.90.000541
noncoding29734G29734TGT88B.1.1.1980.011747
noncoding29734G29734TGT88B.1.177.100.007024
noncoding29734G29734TGT88B.1.3980.02381
noncoding29734G29734TGT77AE.80.003423
noncoding29734G29734TGT77AY.39.10.000277
noncoding29734G29734TGT77B.1.1.3720.004821
noncoding29734G29734TGT77B.1.5170.002989
noncoding29734G29734TGT77B.1.5870.013283
noncoding29734G29734TGT66AY.140.000528
noncoding29734G29734TGT66AY.540.000572
noncoding29734G29734TGT66B.1.1.4340.002091
noncoding29734G29734TGT66B.1.5030.014925
noncoding29734G29734TGT55AY.320.002662
noncoding29734G29734TGT55AY.410.00147
noncoding29734G29734TGT55AY.740.000578
noncoding29734G29734TGT55AY.940.002213
noncoding29734G29734TGT55B.1.177.810.000947
noncoding29734G29734TGT55B.1.2650.006353
noncoding29734G29734TGT55B.1.5820.002453
noncoding29734G29734TGT55B.6.80.041322
noncoding29734G29734TGT55P.20.000933
noncoding29734G29734TGT44AE.30.129032
noncoding29734G29734TGT44AP.10.006006
noncoding29734G29734TGT44AY.700.000834
noncoding29734G29734TGT44B.1.1.1890.006051
noncoding29734G29734TGT44B.1.1.2140.000222
noncoding29734G29734TGT44B.1.1.250.002274
noncoding29734G29734TGT44B.1.1.2840.00043
noncoding29734G29734TGT44B.1.1.4200.004024
noncoding29734G29734TGT44B.1.240.10.1
noncoding29734G29734TGT44B.1.258.220.010667
noncoding29734G29734TGT44B.1.36.80.004
noncoding29734G29734TGT44B.1.5750.001214
noncoding29734G29734TGT33AD.20.000657
noncoding29734G29734TGT33AY.1160.00086
noncoding29734G29734TGT33AY.340.000291
noncoding29734G29734TGT33AY.4.50.000322
noncoding29734G29734TGT33AY.46.50.000595
noncoding29734G29734TGT33AY.530.000863
noncoding29734G29734TGT33AY.70.000588
noncoding29734G29734TGT33B.1.1.2940.003797
noncoding29734G29734TGT33B.1.1.330.001263
noncoding29734G29734TGT33B.1.1.3540.013158
noncoding29734G29734TGT33B.1.1.500.002037
noncoding29734G29734TGT33B.1.1.5210.016043
noncoding29734G29734TGT33B.1.1.630.001157
noncoding29734G29734TGT33B.1.1390.002199
noncoding29734G29734TGT33B.1.177.40.000633
noncoding29734G29734TGT33B.1.177.560.002003
noncoding29734G29734TGT33B.1.177.80.002257
noncoding29734G29734TGT33B.1.3110.000824
noncoding29734G29734TGT33B.1.351.10.115385
noncoding29734G29734TGT33B.1.4220.002437
noncoding29734G29734TGT33B.1.4560.009804
noncoding29734G29734TGT22A.23.10.001408
noncoding29734G29734TGT22AY.1070.000932
noncoding29734G29734TGT22AY.1080.002205
noncoding29734G29734TGT22AY.1090.001479
noncoding29734G29734TGT22AY.1130.000285
noncoding29734G29734TGT22AY.160.000759
noncoding29734G29734TGT22AY.190.002281
noncoding29734G29734TGT22AY.3.10.000171
noncoding29734G29734TGT22AY.4.10.001475
noncoding29734G29734TGT22AY.400.001929
noncoding29734G29734TGT22AY.46.20.001271
noncoding29734G29734TGT22AY.46.60.000144
noncoding29734G29734TGT22AY.520.001629
noncoding29734G29734TGT22AY.590.001059
noncoding29734G29734TGT22AY.680.000547
noncoding29734G29734TGT22AY.710.00095
noncoding29734G29734TGT22AY.75.10.000361
noncoding29734G29734TGT22AY.770.002255
noncoding29734G29734TGT22AY.840.000875
noncoding29734G29734TGT22AY.900.001369
noncoding29734G29734TGT22AY.990.002099
noncoding29734G29734TGT22B0.000256
noncoding29734G29734TGT22B.1.1.1170.019417
noncoding29734G29734TGT22B.1.1.1760.000879
noncoding29734G29734TGT22B.1.1.2160.001781
noncoding29734G29734TGT22B.1.1.2220.000408
noncoding29734G29734TGT22B.1.1.280.000622
noncoding29734G29734TGT22B.1.1.3260.003521
noncoding29734G29734TGT22B.1.1.3980.006452
noncoding29734G29734TGT22B.1.177.210.000153
noncoding29734G29734TGT22B.1.2320.001075
noncoding29734G29734TGT22B.1.2410.001623
noncoding29734G29734TGT22B.1.3290.001215
noncoding29734G29734TGT22B.1.3960.001411
noncoding29734G29734TGT22B.1.4000.000858
noncoding29734G29734TGT22C.350.001548
noncoding29734G29734TGT22C.40.02
noncoding29734G29734TGT22P.1.120.000968
noncoding29734G29734TGT22P.1.170.000324
noncoding29734G29734TGT22P.1.40.001953
noncoding29734G29734TGT22Q.40.00091
noncoding29734G29734TGT11A.10.000282
noncoding29734G29734TGT11AU.20.002421
noncoding29734G29734TGT11AY.100.00053
noncoding29734G29734TGT11AY.1040.001984
noncoding29734G29734TGT11AY.116.10.000311
noncoding29734G29734TGT11AY.130.000161
noncoding29734G29734TGT11AY.16.10.00047
noncoding29734G29734TGT11AY.23.10.000417
noncoding29734G29734TGT11AY.270.000065
noncoding29734G29734TGT11AY.4.30.000842
noncoding29734G29734TGT11AY.4.40.000409
noncoding29734G29734TGT11AY.46.10.001027
noncoding29734G29734TGT11AY.46.40.000165
noncoding29734G29734TGT11AY.490.003195
noncoding29734G29734TGT11AY.5.40.000277
noncoding29734G29734TGT11AY.560.001605
noncoding29734G29734TGT11AY.600.000938
noncoding29734G29734TGT11AY.620.000436
noncoding29734G29734TGT11AY.690.000187
noncoding29734G29734TGT11AY.7.20.000559
noncoding29734G29734TGT11AY.750.000056
noncoding29734G29734TGT11AY.790.001211
noncoding29734G29734TGT11AY.80.000606
noncoding29734G29734TGT11AY.800.001129
noncoding29734G29734TGT11AY.860.00083
noncoding29734G29734TGT11AY.910.00073
noncoding29734G29734TGT11AY.99.20.000092
noncoding29734G29734TGT11B.1.1.1340.011364
noncoding29734G29734TGT11B.1.1.1570.000913
noncoding29734G29734TGT11B.1.1.2260.005814
noncoding29734G29734TGT11B.1.1.2410.00207
noncoding29734G29734TGT11B.1.1.2630.001558
noncoding29734G29734TGT11B.1.1.2650.003155
noncoding29734G29734TGT11B.1.1.270.00565
noncoding29734G29734TGT11B.1.1.3060.000438
noncoding29734G29734TGT11B.1.1.3940.02439
noncoding29734G29734TGT11B.1.1.4090.002833
noncoding29734G29734TGT11B.1.1.4130.006897
noncoding29734G29734TGT11B.1.1.4160.000905
noncoding29734G29734TGT11B.1.1.4320.001266
noncoding29734G29734TGT11B.1.1.4420.018519
noncoding29734G29734TGT11B.1.1.4480.002033
noncoding29734G29734TGT11B.1.1.580.005376
noncoding29734G29734TGT11B.1.1.700.000341
noncoding29734G29734TGT11B.1.1430.021277
noncoding29734G29734TGT11B.1.1460.004237
noncoding29734G29734TGT11B.1.1470.000756
noncoding29734G29734TGT11B.1.1690.014925
noncoding29734G29734TGT11B.1.177.320.00135
noncoding29734G29734TGT11B.1.177.330.001645
noncoding29734G29734TGT11B.1.177.510.004566
noncoding29734G29734TGT11B.1.177.600.000218
noncoding29734G29734TGT11B.1.177.70.000165
noncoding29734G29734TGT11B.1.177.730.000566
noncoding29734G29734TGT11B.1.177.770.000726
noncoding29734G29734TGT11B.1.177.830.001481
noncoding29734G29734TGT11B.1.177.850.005435
noncoding29734G29734TGT11B.1.177.870.000728
noncoding29734G29734TGT11B.1.2140.003663
noncoding29734G29734TGT11B.1.214.20.0006
noncoding29734G29734TGT11B.1.221.20.004016
noncoding29734G29734TGT11B.1.2400.000216
noncoding29734G29734TGT11B.1.258.120.007874
noncoding29734G29734TGT11B.1.2600.003344
noncoding29734G29734TGT11B.1.2790.000514
noncoding29734G29734TGT11B.1.351.20.000303
noncoding29734G29734TGT11B.1.36.220.001208
noncoding29734G29734TGT11B.1.36.360.000602
noncoding29734G29734TGT11B.1.3670.000792
noncoding29734G29734TGT11B.1.3710.001122
noncoding29734G29734TGT11B.1.3890.001002
noncoding29734G29734TGT11B.1.4090.000781
noncoding29734G29734TGT11B.1.4130.004255
noncoding29734G29734TGT11B.1.416.10.001563
noncoding29734G29734TGT11B.1.4200.010417
noncoding29734G29734TGT11B.1.4620.007246
noncoding29734G29734TGT11B.1.4660.023256
noncoding29734G29734TGT11B.1.466.20.000391
noncoding29734G29734TGT11B.1.4950.009091
noncoding29734G29734TGT11B.1.5230.002451
noncoding29734G29734TGT11B.1.5300.007143
noncoding29734G29734TGT11B.1.5640.000426
noncoding29734G29734TGT11B.1.564.10.001577
noncoding29734G29734TGT11B.1.5650.00081
noncoding29734G29734TGT11B.1.5670.003333
noncoding29734G29734TGT11B.1.5770.000687
noncoding29734G29734TGT11B.1.5780.017857
noncoding29734G29734TGT11B.1.5890.007576
noncoding29734G29734TGT11B.1.621.10.000506
noncoding29734G29734TGT11B.1.6230.000536
noncoding29734G29734TGT11B.1.6250.002353
noncoding29734G29734TGT11B.1.6340.003425
noncoding29734G29734TGT11B.1.6370.000073
noncoding29734G29734TGT11B.500.111111
noncoding29734G29734TGT11C.170.055556
noncoding29734G29734TGT11C.230.005814
noncoding29734G29734TGT11C.90.030303
noncoding29734G29734TGT11L.10.001905
noncoding29734G29734TGT11L.30.003546
noncoding29734G29734TGT11N.50.001767
noncoding29734G29734TGT11P.1.10.000318
noncoding29734G29734TGT11P.1.160.000374
noncoding29734G29734TGT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.