CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29717-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29717G29717-noncodingG-11851185129717-29717

Details of the mutation G29717- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29717G29717-G-11851185All0.000227
noncoding29717G29717-G-817817AY.380.407888
noncoding29717G29717-G-3535B.1.1.70.000031
noncoding29717G29717-G-2222B.1.617.20.000083
noncoding29717G29717-G-1919AY.920.005458
noncoding29717G29717-G-1717AY.40.000026
noncoding29717G29717-G-1616AY.290.000252
noncoding29717G29717-G-1111AY.250.000066
noncoding29717G29717-G-1111AY.30.000109
noncoding29717G29717-G-1010AY.440.000061
noncoding29717G29717-G-99AY.390.000222
noncoding29717G29717-G-88B.10.000073
noncoding29717G29717-G-88B.1.4290.000188
noncoding29717G29717-G-77B.1.1.460.030568
noncoding29717G29717-G-77B.1.160.330.030973
noncoding29717G29717-G-77B.1.2100.014925
noncoding29717G29717-G-66AY.1030.000037
noncoding29717G29717-G-66AY.430.000027
noncoding29717G29717-G-66B.1.20.000053
noncoding29717G29717-G-55AY.450.000608
noncoding29717G29717-G-55AY.470.000156
noncoding29717G29717-G-55AY.750.00028
noncoding29717G29717-G-55B.1.4080.01845
noncoding29717G29717-G-55B.1.4270.000252
noncoding29717G29717-G-44AY.50.000083
noncoding29717G29717-G-44B.1.10.000073
noncoding29717G29717-G-44B.1.1770.000053
noncoding29717G29717-G-33AY.1090.002219
noncoding29717G29717-G-33AY.1190.000106
noncoding29717G29717-G-33AY.540.000286
noncoding29717G29717-G-33AY.610.000314
noncoding29717G29717-G-33AY.650.001599
noncoding29717G29717-G-33B0.000383
noncoding29717G29717-G-33B.1.1.3060.001315
noncoding29717G29717-G-33B.1.1600.000094
noncoding29717G29717-G-33B.1.2210.000213
noncoding29717G29717-G-33B.1.440.025
noncoding29717G29717-G-33B.1.5950.000783
noncoding29717G29717-G-33P.10.000047
noncoding29717G29717-G-22A0.000774
noncoding29717G29717-G-22AY.1020.000053
noncoding29717G29717-G-22AY.1140.000462
noncoding29717G29717-G-22AY.200.000078
noncoding29717G29717-G-22AY.230.000139
noncoding29717G29717-G-22AY.5.30.000675
noncoding29717G29717-G-22AY.70.000392
noncoding29717G29717-G-22AY.740.000231
noncoding29717G29717-G-22AY.75.10.000361
noncoding29717G29717-G-22AY.840.000875
noncoding29717G29717-G-22AY.9.20.000073
noncoding29717G29717-G-22B.1.1.1940.009901
noncoding29717G29717-G-22B.1.2400.000431
noncoding29717G29717-G-22B.1.36.80.002
noncoding29717G29717-G-22B.390.004662
noncoding29717G29717-G-22C.370.000232
noncoding29717G29717-G-22P.1.150.000465
noncoding29717G29717-G-11AD.20.000219
noncoding29717G29717-G-11AY.100.00053
noncoding29717G29717-G-11AY.1110.000183
noncoding29717G29717-G-11AY.1170.000085
noncoding29717G29717-G-11AY.1200.000037
noncoding29717G29717-G-11AY.120.2.10.000498
noncoding29717G29717-G-11AY.140.000088
noncoding29717G29717-G-11AY.260.000028
noncoding29717G29717-G-11AY.3.10.000085
noncoding29717G29717-G-11AY.340.000097
noncoding29717G29717-G-11AY.400.000964
noncoding29717G29717-G-11AY.420.00004
noncoding29717G29717-G-11AY.460.000104
noncoding29717G29717-G-11AY.46.20.000635
noncoding29717G29717-G-11AY.46.30.000934
noncoding29717G29717-G-11AY.46.60.000072
noncoding29717G29717-G-11AY.5.40.000277
noncoding29717G29717-G-11AY.520.000814
noncoding29717G29717-G-11AY.560.001605
noncoding29717G29717-G-11AY.620.000436
noncoding29717G29717-G-11AY.810.001992
noncoding29717G29717-G-11AY.870.000833
noncoding29717G29717-G-11AY.9.10.000084
noncoding29717G29717-G-11AY.910.00073
noncoding29717G29717-G-11AY.940.000443
noncoding29717G29717-G-11AY.99.20.000092
noncoding29717G29717-G-11AZ.20.000821
noncoding29717G29717-G-11B.1.1.1970.037037
noncoding29717G29717-G-11B.1.1.2140.000055
noncoding29717G29717-G-11B.1.1.2180.007692
noncoding29717G29717-G-11B.1.1.2220.000204
noncoding29717G29717-G-11B.1.1.2770.000759
noncoding29717G29717-G-11B.1.1.3050.003861
noncoding29717G29717-G-11B.1.1.330.000421
noncoding29717G29717-G-11B.1.1.3480.000796
noncoding29717G29717-G-11B.1.1.390.00051
noncoding29717G29717-G-11B.1.1.4090.002833
noncoding29717G29717-G-11B.1.177.630.002703
noncoding29717G29717-G-11B.1.2060.000816
noncoding29717G29717-G-11B.1.2220.001692
noncoding29717G29717-G-11B.1.2580.000067
noncoding29717G29717-G-11B.1.258.160.001637
noncoding29717G29717-G-11B.1.2980.002114
noncoding29717G29717-G-11B.1.36.310.001751
noncoding29717G29717-G-11B.1.438.10.000107
noncoding29717G29717-G-11B.1.4430.004673
noncoding29717G29717-G-11B.1.5170.000427
noncoding29717G29717-G-11B.1.5250.000113
noncoding29717G29717-G-11B.1.5820.000491
noncoding29717G29717-G-11B.1.617.30.002985
noncoding29717G29717-G-11B.1.6210.000089
noncoding29717G29717-G-11B.1.6370.000073
noncoding29717G29717-G-11B.60.00091
noncoding29717G29717-G-11P.1.140.000048
noncoding29717G29717-G-11P.1.170.000162
noncoding29717G29717-G-11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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