CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29706T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29706G29706TnoncodingGT1846918469129706-29706

Details of the mutation G29706T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29706G29706TGT1846918469All0.003532
noncoding29706G29706TGT34403440AY.260.097387
noncoding29706G29706TGT28412841AY.40.004422
noncoding29706G29706TGT22992299AY.250.013828
noncoding29706G29706TGT12661266B.1.1.390.64526
noncoding29706G29706TGT10051005B.1.1.70.0009
noncoding29706G29706TGT816816B.1.617.20.003073
noncoding29706G29706TGT635635AY.440.003865
noncoding29706G29706TGT464464AY.430.002056
noncoding29706G29706TGT402402AY.1030.002496
noncoding29706G29706TGT366366B.1.2580.024356
noncoding29706G29706TGT339339B.1.3510.010077
noncoding29706G29706TGT270270B.1.6370.01973
noncoding29706G29706TGT245245AY.30.002437
noncoding29706G29706TGT208208AY.1200.007733
noncoding29706G29706TGT200200B.10.001832
noncoding29706G29706TGT189189B.1.20.001664
noncoding29706G29706TGT170170AY.340.016484
noncoding29706G29706TGT147147B.1.4270.007423
noncoding29706G29706TGT140140B.1.1770.001843
noncoding29706G29706TGT120120B.1.10.002177
noncoding29706G29706TGT102102AY.60.004195
noncoding29706G29706TGT9090AY.270.005825
noncoding29706G29706TGT8989B.1.1.3120.170172
noncoding29706G29706TGT8787AY.1020.002307
noncoding29706G29706TGT8686AY.99.20.007926
noncoding29706G29706TGT8181AY.360.012005
noncoding29706G29706TGT7272B.1.1.5190.002859
noncoding29706G29706TGT6666AY.230.004603
noncoding29706G29706TGT6464B.1.1600.001996
noncoding29706G29706TGT6363AY.50.001301
noncoding29706G29706TGT6161P.10.000961
noncoding29706G29706TGT5959AY.7.10.006649
noncoding29706G29706TGT5555B.1.4290.001294
noncoding29706G29706TGT5454AY.29.10.011907
noncoding29706G29706TGT5454AY.390.001334
noncoding29706G29706TGT4848B.1.5260.001128
noncoding29706G29706TGT4444B.1.6210.003895
noncoding29706G29706TGT4343AY.10.017016
noncoding29706G29706TGT4343AY.980.003397
noncoding29706G29706TGT4242B.1.258.140.041176
noncoding29706G29706TGT4141AY.200.001593
noncoding29706G29706TGT4141AY.420.001649
noncoding29706G29706TGT4141B.1.2210.002912
noncoding29706G29706TGT3939B.1.1.10.012741
noncoding29706G29706TGT3636B.1.1.3470.654545
noncoding29706G29706TGT3333B.1.5990.120438
noncoding29706G29706TGT3131AY.1110.005678
noncoding29706G29706TGT2929AY.9.20.001065
noncoding29706G29706TGT2929B.1.1.3581
noncoding29706G29706TGT2929B.1.5970.134259
noncoding29706G29706TGT2828AY.460.002914
noncoding29706G29706TGT2626AY.98.10.001259
noncoding29706G29706TGT2626B.1.1.2770.019727
noncoding29706G29706TGT2525AY.330.001669
noncoding29706G29706TGT2424N.90.142857
noncoding29706G29706TGT2323A.2.5.20.036164
noncoding29706G29706TGT2323AY.1180.001441
noncoding29706G29706TGT2323B.1.1.1940.113861
noncoding29706G29706TGT2121AY.1000.000966
noncoding29706G29706TGT2020B.1.1.2140.001109
noncoding29706G29706TGT1919AY.4.20.000412
noncoding29706G29706TGT1818C.36.30.01021
noncoding29706G29706TGT1717AY.1190.0006
noncoding29706G29706TGT1717AY.470.000529
noncoding29706G29706TGT1717AY.70.003332
noncoding29706G29706TGT1717P.1.100.004581
noncoding29706G29706TGT1616AY.1140.003698
noncoding29706G29706TGT1616AY.140.001408
noncoding29706G29706TGT1616AY.830.027586
noncoding29706G29706TGT1616B.1.466.20.00626
noncoding29706G29706TGT1515AY.610.001572
noncoding29706G29706TGT1515C.360.013661
noncoding29706G29706TGT1414AY.4.30.011785
noncoding29706G29706TGT1414B.1.1.3290.053846
noncoding29706G29706TGT1313AY.450.001582
noncoding29706G29706TGT1313AY.5.30.004386
noncoding29706G29706TGT1313B.1.2430.000905
noncoding29706G29706TGT1212B.1.1.3680.037037
noncoding29706G29706TGT1212B.1.1.500.008147
noncoding29706G29706TGT1212B.1.6190.010453
noncoding29706G29706TGT1111AY.870.009159
noncoding29706G29706TGT1111B.1.1.1610.038869
noncoding29706G29706TGT1111B.1.1.2040.033435
noncoding29706G29706TGT1111B.1.5600.050926
noncoding29706G29706TGT1010AY.290.000158
noncoding29706G29706TGT1010AY.590.005297
noncoding29706G29706TGT1010AY.750.00056
noncoding29706G29706TGT1010B.1.1.3060.004384
noncoding29706G29706TGT1010C.370.001161
noncoding29706G29706TGT1010P.20.001866
noncoding29706G29706TGT1010Q.80.001649
noncoding29706G29706TGT99AY.1170.000761
noncoding29706G29706TGT99AY.120.10.002889
noncoding29706G29706TGT99AY.530.002588
noncoding29706G29706TGT99B0.00115
noncoding29706G29706TGT99B.1.1.2410.018634
noncoding29706G29706TGT99B.1.4620.065217
noncoding29706G29706TGT99B.1.5750.002731
noncoding29706G29706TGT88AY.1130.001139
noncoding29706G29706TGT88AY.130.001288
noncoding29706G29706TGT88B.1.3490.005718
noncoding29706G29706TGT88P.1.170.001294
noncoding29706G29706TGT77AY.3.10.000597
noncoding29706G29706TGT77AY.39.10.000277
noncoding29706G29706TGT77AY.46.60.000505
noncoding29706G29706TGT77AY.710.003325
noncoding29706G29706TGT77B.1.2320.003761
noncoding29706G29706TGT77B.1.360.001021
noncoding29706G29706TGT77B.1.36.80.007
noncoding29706G29706TGT77B.1.4700.009831
noncoding29706G29706TGT77B.1.5250.000792
noncoding29706G29706TGT77B.1.5950.001827
noncoding29706G29706TGT77R.10.00063
noncoding29706G29706TGT66AY.1090.004438
noncoding29706G29706TGT66AY.540.000572
noncoding29706G29706TGT66AY.550.005505
noncoding29706G29706TGT55AY.1210.000677
noncoding29706G29706TGT55AY.370.00158
noncoding29706G29706TGT55AY.90.000338
noncoding29706G29706TGT55B.1.1.100.005574
noncoding29706G29706TGT55B.1.1.2240.071429
noncoding29706G29706TGT55B.1.1.4160.004525
noncoding29706G29706TGT55B.1.258.110.001982
noncoding29706G29706TGT55B.1.3110.001373
noncoding29706G29706TGT55B.1.36.290.002587
noncoding29706G29706TGT55B.1.5090.004329
noncoding29706G29706TGT55B.1.5960.000436
noncoding29706G29706TGT55B.1.6280.001762
noncoding29706G29706TGT55P.1.20.00578
noncoding29706G29706TGT44AD.20.000876
noncoding29706G29706TGT44AY.1060.00134
noncoding29706G29706TGT44AY.1160.001147
noncoding29706G29706TGT44AY.300.001583
noncoding29706G29706TGT44AY.34.10.00204
noncoding29706G29706TGT44AY.350.000932
noncoding29706G29706TGT44AY.5.40.001107
noncoding29706G29706TGT44AY.700.000834
noncoding29706G29706TGT44AY.740.000463
noncoding29706G29706TGT44AY.970.006803
noncoding29706G29706TGT44B.1.1.2220.000816
noncoding29706G29706TGT44B.1.1.280.001245
noncoding29706G29706TGT44B.1.1.3050.015444
noncoding29706G29706TGT44B.1.1.3170.001647
noncoding29706G29706TGT44B.1.1.930.102564
noncoding29706G29706TGT44B.1.1110.0047
noncoding29706G29706TGT44B.1.160.320.017167
noncoding29706G29706TGT44B.1.2340.000528
noncoding29706G29706TGT44B.1.3670.00317
noncoding29706G29706TGT44B.1.6090.001918
noncoding29706G29706TGT44P.1.140.000191
noncoding29706G29706TGT33AY.160.001139
noncoding29706G29706TGT33AY.16.10.00141
noncoding29706G29706TGT33AY.20.001068
noncoding29706G29706TGT33AY.240.001293
noncoding29706G29706TGT33AY.620.001307
noncoding29706G29706TGT33AY.650.001599
noncoding29706G29706TGT33AY.690.00056
noncoding29706G29706TGT33AY.840.001312
noncoding29706G29706TGT33AY.930.000819
noncoding29706G29706TGT33B.1.1.250.001706
noncoding29706G29706TGT33B.1.1.3180.000905
noncoding29706G29706TGT33B.1.1.4200.003018
noncoding29706G29706TGT33B.1.1.4340.001046
noncoding29706G29706TGT33B.1.1.5260.010638
noncoding29706G29706TGT33B.1.160.160.002788
noncoding29706G29706TGT33B.1.1640.044776
noncoding29706G29706TGT33B.1.177.730.001699
noncoding29706G29706TGT33B.1.177.770.002179
noncoding29706G29706TGT33B.1.177.800.005736
noncoding29706G29706TGT33B.1.2400.000647
noncoding29706G29706TGT33B.1.36.170.001482
noncoding29706G29706TGT33B.1.3750.002459
noncoding29706G29706TGT33B.1.5030.007463
noncoding29706G29706TGT33B.1.5870.005693
noncoding29706G29706TGT33B.1.6050.017857
noncoding29706G29706TGT33B.1.6360.020134
noncoding29706G29706TGT33D.20.000225
noncoding29706G29706TGT22A.10.000564
noncoding29706G29706TGT22AY.1050.001286
noncoding29706G29706TGT22AY.1080.002205
noncoding29706G29706TGT22AY.1100.000225
noncoding29706G29706TGT22AY.120.20.002571
noncoding29706G29706TGT22AY.210.003795
noncoding29706G29706TGT22AY.280.003781
noncoding29706G29706TGT22AY.4.50.000215
noncoding29706G29706TGT22AY.570.001312
noncoding29706G29706TGT22AY.680.000547
noncoding29706G29706TGT22AY.790.002421
noncoding29706G29706TGT22AY.910.001461
noncoding29706G29706TGT22AY.940.000885
noncoding29706G29706TGT22AY.950.001522
noncoding29706G29706TGT22AY.990.002099
noncoding29706G29706TGT22AZ.20.001642
noncoding29706G29706TGT22B.1.1.2160.001781
noncoding29706G29706TGT22B.1.1.3070.005063
noncoding29706G29706TGT22B.1.1.330.000842
noncoding29706G29706TGT22B.1.1.3590.055556
noncoding29706G29706TGT22B.1.1.3980.006452
noncoding29706G29706TGT22B.1.1.4350.068966
noncoding29706G29706TGT22B.1.1.460.008734
noncoding29706G29706TGT22B.1.1.630.000772
noncoding29706G29706TGT22B.1.110.30.001437
noncoding29706G29706TGT22B.1.177.750.002081
noncoding29706G29706TGT22B.1.177.810.000379
noncoding29706G29706TGT22B.1.177.820.000955
noncoding29706G29706TGT22B.1.177.860.000367
noncoding29706G29706TGT22B.1.221.30.001667
noncoding29706G29706TGT22B.1.2220.003384
noncoding29706G29706TGT22B.1.2360.004107
noncoding29706G29706TGT22B.1.2410.001623
noncoding29706G29706TGT22B.1.2790.001027
noncoding29706G29706TGT22B.1.36.10.002281
noncoding29706G29706TGT22B.1.416.10.003125
noncoding29706G29706TGT22B.1.4990.002101
noncoding29706G29706TGT22B.1.5230.004902
noncoding29706G29706TGT22B.1.5280.095238
noncoding29706G29706TGT22B.1.621.10.001012
noncoding29706G29706TGT22B.1.6250.004706
noncoding29706G29706TGT22B.1.6270.00404
noncoding29706G29706TGT22P.1.10.000635
noncoding29706G29706TGT22P.1.70.000639
noncoding29706G29706TGT22Q.10.000253
noncoding29706G29706TGT11A0.000387
noncoding29706G29706TGT11A.20.000662
noncoding29706G29706TGT11A.30.002096
noncoding29706G29706TGT11A.50.001923
noncoding29706G29706TGT11AY.100.00053
noncoding29706G29706TGT11AY.120.2.10.000498
noncoding29706G29706TGT11AY.320.000532
noncoding29706G29706TGT11AY.4.10.000737
noncoding29706G29706TGT11AY.4.2.10.000149
noncoding29706G29706TGT11AY.4.40.000409
noncoding29706G29706TGT11AY.400.000964
noncoding29706G29706TGT11AY.410.000294
noncoding29706G29706TGT11AY.480.000465
noncoding29706G29706TGT11AY.510.000909
noncoding29706G29706TGT11AY.580.000907
noncoding29706G29706TGT11AY.600.000938
noncoding29706G29706TGT11AY.75.10.00018
noncoding29706G29706TGT11AY.770.001127
noncoding29706G29706TGT11AY.80.000606
noncoding29706G29706TGT11AY.850.000427
noncoding29706G29706TGT11B.1.1.1280.007092
noncoding29706G29706TGT11B.1.1.1700.001247
noncoding29706G29706TGT11B.1.1.2200.001859
noncoding29706G29706TGT11B.1.1.2250.007194
noncoding29706G29706TGT11B.1.1.2540.011236
noncoding29706G29706TGT11B.1.1.2570.009709
noncoding29706G29706TGT11B.1.1.2650.003155
noncoding29706G29706TGT11B.1.1.2840.000107
noncoding29706G29706TGT11B.1.1.2970.002237
noncoding29706G29706TGT11B.1.1.3010.001179
noncoding29706G29706TGT11B.1.1.3040.002809
noncoding29706G29706TGT11B.1.1.3220.008772
noncoding29706G29706TGT11B.1.1.3260.001761
noncoding29706G29706TGT11B.1.1.370.000193
noncoding29706G29706TGT11B.1.1.3740.002375
noncoding29706G29706TGT11B.1.1.3890.006061
noncoding29706G29706TGT11B.1.1.4280.009434
noncoding29706G29706TGT11B.1.1.4320.001266
noncoding29706G29706TGT11B.1.1.5210.005348
noncoding29706G29706TGT11B.1.1.700.000341
noncoding29706G29706TGT11B.1.1.80.003584
noncoding29706G29706TGT11B.1.1390.000733
noncoding29706G29706TGT11B.1.1460.004237
noncoding29706G29706TGT11B.1.1580.02381
noncoding29706G29706TGT11B.1.177.210.000076
noncoding29706G29706TGT11B.1.177.230.003236
noncoding29706G29706TGT11B.1.177.330.001645
noncoding29706G29706TGT11B.1.177.360.016129
noncoding29706G29706TGT11B.1.177.450.000381
noncoding29706G29706TGT11B.1.177.570.000281
noncoding29706G29706TGT11B.1.177.60.000977
noncoding29706G29706TGT11B.1.1990.004132
noncoding29706G29706TGT11B.1.214.10.02
noncoding29706G29706TGT11B.1.2390.001221
noncoding29706G29706TGT11B.1.258.170.000104
noncoding29706G29706TGT11B.1.258.210.007752
noncoding29706G29706TGT11B.1.36.160.001425
noncoding29706G29706TGT11B.1.3690.000285
noncoding29706G29706TGT11B.1.3710.001122
noncoding29706G29706TGT11B.1.3910.001127
noncoding29706G29706TGT11B.1.3960.000706
noncoding29706G29706TGT11B.1.4040.001302
noncoding29706G29706TGT11B.1.4110.003704
noncoding29706G29706TGT11B.1.4160.001269
noncoding29706G29706TGT11B.1.4170.028571
noncoding29706G29706TGT11B.1.4250.002994
noncoding29706G29706TGT11B.1.4280.00102
noncoding29706G29706TGT11B.1.4370.020833
noncoding29706G29706TGT11B.1.4590.004082
noncoding29706G29706TGT11B.1.4690.00361
noncoding29706G29706TGT11B.1.4780.011765
noncoding29706G29706TGT11B.1.5240.001406
noncoding29706G29706TGT11B.1.5490.007194
noncoding29706G29706TGT11B.1.5610.000397
noncoding29706G29706TGT11B.1.5650.00081
noncoding29706G29706TGT11B.1.5900.004545
noncoding29706G29706TGT11B.1.6060.006024
noncoding29706G29706TGT11B.1.617.10.000129
noncoding29706G29706TGT11B.4.80.071429
noncoding29706G29706TGT11B.400.000364
noncoding29706G29706TGT11C.260.007353
noncoding29706G29706TGT11C.300.001727
noncoding29706G29706TGT11C.350.000774
noncoding29706G29706TGT11C.37.10.002618
noncoding29706G29706TGT11N.10.016949
noncoding29706G29706TGT11P.1.120.000484
noncoding29706G29706TGT11P.1.60.001946
noncoding29706G29706TGT11P.70.004367
noncoding29706G29706TGT11U.30.003861
noncoding29706G29706TGT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.