CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G29688T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29688G29688TnoncodingGT1016310163129688-29688

Details of the mutation G29688T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29688G29688TGT1016310163All0.001944
noncoding29688G29688TGT23262326B.1.1.70.002082
noncoding29688G29688TGT13291329AY.640.791071
noncoding29688G29688TGT10401040B.1.617.20.003916
noncoding29688G29688TGT898898AY.40.001398
noncoding29688G29688TGT828828AY.430.003668
noncoding29688G29688TGT489489AY.1020.012965
noncoding29688G29688TGT337337AY.440.002051
noncoding29688G29688TGT174174B.1.10.003157
noncoding29688G29688TGT171171AY.1190.006038
noncoding29688G29688TGT142142P.10.002237
noncoding29688G29688TGT135135AY.330.009015
noncoding29688G29688TGT114114AY.1030.000708
noncoding29688G29688TGT102102B.1.2400.021987
noncoding29688G29688TGT9999AY.390.002446
noncoding29688G29688TGT9393AY.1140.021493
noncoding29688G29688TGT9393B.10.000852
noncoding29688G29688TGT7474AY.4.50.007954
noncoding29688G29688TGT7272B.1.2430.00501
noncoding29688G29688TGT7070B.1.20.000616
noncoding29688G29688TGT5757AY.250.000343
noncoding29688G29688TGT5757B.1.1770.000751
noncoding29688G29688TGT5454AY.30.000537
noncoding29688G29688TGT5454AY.98.10.002615
noncoding29688G29688TGT4848AY.60.001974
noncoding29688G29688TGT4444B.1.438.10.00472
noncoding29688G29688TGT4141AY.50.000847
noncoding29688G29688TGT3939AY.4.20.000846
noncoding29688G29688TGT3434AY.200.001321
noncoding29688G29688TGT3030B.1.5590.75
noncoding29688G29688TGT2727B.1.2340.003562
noncoding29688G29688TGT2424B.1.1.5190.000953
noncoding29688G29688TGT2323AY.420.000925
noncoding29688G29688TGT2323B.1.1.2770.017451
noncoding29688G29688TGT2222B.1.1600.000686
noncoding29688G29688TGT2222P.1.40.021484
noncoding29688G29688TGT2121B.1.177.600.004587
noncoding29688G29688TGT2121B.1.596.10.196262
noncoding29688G29688TGT2020AY.460.002082
noncoding29688G29688TGT1919AY.9.20.000698
noncoding29688G29688TGT1818AY.350.004195
noncoding29688G29688TGT1818AY.99.20.001659
noncoding29688G29688TGT1818B.1.360.002626
noncoding29688G29688TGT1717AY.260.000481
noncoding29688G29688TGT1717AY.300.006727
noncoding29688G29688TGT1717AY.5.30.005735
noncoding29688G29688TGT1717AY.750.000952
noncoding29688G29688TGT1616AY.470.000498
noncoding29688G29688TGT1515AY.116.10.004671
noncoding29688G29688TGT1515B.1.2580.000998
noncoding29688G29688TGT1515B.1.6090.007191
noncoding29688G29688TGT1414AY.290.000221
noncoding29688G29688TGT1414AY.610.001467
noncoding29688G29688TGT1414B.1.177.520.024605
noncoding29688G29688TGT1313B.1.2210.000923
noncoding29688G29688TGT1313B.1.36.290.006725
noncoding29688G29688TGT1212A.2.40.040404
noncoding29688G29688TGT1212AY.46.20.007624
noncoding29688G29688TGT1212AY.650.006397
noncoding29688G29688TGT1212B.1.1570.035821
noncoding29688G29688TGT1212B.1.3510.000357
noncoding29688G29688TGT1212B.1.4290.000282
noncoding29688G29688TGT1212B.1.5260.000282
noncoding29688G29688TGT1212P.1.100.003234
noncoding29688G29688TGT1212Q.30.00174
noncoding29688G29688TGT1111AY.1170.00093
noncoding29688G29688TGT1111AY.540.001049
noncoding29688G29688TGT1010AY.3.10.000853
noncoding29688G29688TGT1010B.1.617.10.00129
noncoding29688G29688TGT99AY.230.000628
noncoding29688G29688TGT88A.10.002255
noncoding29688G29688TGT88AY.1180.000501
noncoding29688G29688TGT88B.1.4270.000404
noncoding29688G29688TGT88Q.80.001319
noncoding29688G29688TGT77AY.130.001127
noncoding29688G29688TGT77AY.450.000852
noncoding29688G29688TGT77AY.9.10.000586
noncoding29688G29688TGT77B.1.1.2940.008861
noncoding29688G29688TGT77B.1.5250.000792
noncoding29688G29688TGT77B.1.6210.00062
noncoding29688G29688TGT77P.1.150.001626
noncoding29688G29688TGT66AY.550.005505
noncoding29688G29688TGT66B0.000767
noncoding29688G29688TGT66B.1.1.1530.006572
noncoding29688G29688TGT66B.1.177.870.004367
noncoding29688G29688TGT66B.1.4700.008427
noncoding29688G29688TGT66B.1.5750.00182
noncoding29688G29688TGT66B.1.6280.002114
noncoding29688G29688TGT66B.400.002186
noncoding29688G29688TGT66P.1.140.000287
noncoding29688G29688TGT66P.20.00112
noncoding29688G29688TGT55AY.240.002155
noncoding29688G29688TGT55AY.270.000324
noncoding29688G29688TGT55AY.980.000395
noncoding29688G29688TGT55B.1.1.280.001556
noncoding29688G29688TGT55B.1.1.2840.000537
noncoding29688G29688TGT55B.1.1.3480.003981
noncoding29688G29688TGT55B.1.36.80.005
noncoding29688G29688TGT55B.1.4070.178571
noncoding29688G29688TGT55B.1.6180.020161
noncoding29688G29688TGT55B.1.6370.000365
noncoding29688G29688TGT44A.23.10.002817
noncoding29688G29688TGT44AU.30.008439
noncoding29688G29688TGT44AY.1060.00134
noncoding29688G29688TGT44AY.1130.00057
noncoding29688G29688TGT44AY.1160.001147
noncoding29688G29688TGT44AY.1200.000149
noncoding29688G29688TGT44AY.140.000352
noncoding29688G29688TGT44AY.46.30.003735
noncoding29688G29688TGT44AY.75.10.000721
noncoding29688G29688TGT44AY.810.007968
noncoding29688G29688TGT44AY.90.00027
noncoding29688G29688TGT44B.1.1.4160.00362
noncoding29688G29688TGT44B.1.1.470.02139
noncoding29688G29688TGT44B.1.3490.002859
noncoding29688G29688TGT44B.1.3500.01173
noncoding29688G29688TGT44B.1.351.20.00121
noncoding29688G29688TGT44B.1.351.30.003506
noncoding29688G29688TGT44B.1.5610.001588
noncoding29688G29688TGT44C.370.000464
noncoding29688G29688TGT33AY.1210.000406
noncoding29688G29688TGT33AY.520.002443
noncoding29688G29688TGT33AY.670.001393
noncoding29688G29688TGT33AY.680.000821
noncoding29688G29688TGT33AY.730.001996
noncoding29688G29688TGT33AY.740.000347
noncoding29688G29688TGT33B.1.1.10.00098
noncoding29688G29688TGT33B.1.1.2190.015
noncoding29688G29688TGT33B.1.1.2220.000612
noncoding29688G29688TGT33B.1.1.250.001706
noncoding29688G29688TGT33B.1.1.3060.001315
noncoding29688G29688TGT33B.1.1.3180.000905
noncoding29688G29688TGT33B.1.3110.000824
noncoding29688G29688TGT33B.1.3690.000856
noncoding29688G29688TGT33C.140.012987
noncoding29688G29688TGT33C.160.003181
noncoding29688G29688TGT33C.360.002732
noncoding29688G29688TGT33D.20.000225
noncoding29688G29688TGT33P.1.90.014423
noncoding29688G29688TGT33R.10.00027
noncoding29688G29688TGT22AY.100.00106
noncoding29688G29688TGT22AY.1050.001286
noncoding29688G29688TGT22AY.1110.000366
noncoding29688G29688TGT22AY.160.000759
noncoding29688G29688TGT22AY.16.10.00094
noncoding29688G29688TGT22AY.39.10.000079
noncoding29688G29688TGT22AY.4.2.10.000298
noncoding29688G29688TGT22AY.46.60.000144
noncoding29688G29688TGT22AY.5.40.000553
noncoding29688G29688TGT22AY.920.000575
noncoding29688G29688TGT22B.1.1.2160.001781
noncoding29688G29688TGT22B.1.1.2300.018349
noncoding29688G29688TGT22B.1.1.2690.002706
noncoding29688G29688TGT22B.1.1.3160.00185
noncoding29688G29688TGT22B.1.1.3170.000823
noncoding29688G29688TGT22B.1.1.370.000386
noncoding29688G29688TGT22B.1.1.4340.000697
noncoding29688G29688TGT22B.1.1.4660.017391
noncoding29688G29688TGT22B.1.177.730.001133
noncoding29688G29688TGT22B.1.177.750.002081
noncoding29688G29688TGT22B.1.2140.007326
noncoding29688G29688TGT22B.1.2360.004107
noncoding29688G29688TGT22B.1.2930.025
noncoding29688G29688TGT22B.1.3620.003082
noncoding29688G29688TGT22B.1.466.20.000782
noncoding29688G29688TGT22B.1.4970.00063
noncoding29688G29688TGT22B.1.5270.007407
noncoding29688G29688TGT22B.1.5440.012048
noncoding29688G29688TGT22B.1.5770.001375
noncoding29688G29688TGT22B.1.5820.000981
noncoding29688G29688TGT22B.1.6190.001742
noncoding29688G29688TGT22B.1.621.10.001012
noncoding29688G29688TGT22B.1.6330.083333
noncoding29688G29688TGT22P.1.130.001797
noncoding29688G29688TGT22P.1.20.002312
noncoding29688G29688TGT11A0.000387
noncoding29688G29688TGT11A.2.50.000499
noncoding29688G29688TGT11AE.80.000489
noncoding29688G29688TGT11AY.10.000396
noncoding29688G29688TGT11AY.1000.000046
noncoding29688G29688TGT11AY.1010.00049
noncoding29688G29688TGT11AY.1090.00074
noncoding29688G29688TGT11AY.1100.000113
noncoding29688G29688TGT11AY.120.10.000321
noncoding29688G29688TGT11AY.280.00189
noncoding29688G29688TGT11AY.29.10.000221
noncoding29688G29688TGT11AY.320.000532
noncoding29688G29688TGT11AY.370.000316
noncoding29688G29688TGT11AY.39.1.10.000725
noncoding29688G29688TGT11AY.4.40.000409
noncoding29688G29688TGT11AY.400.000964
noncoding29688G29688TGT11AY.46.40.000165
noncoding29688G29688TGT11AY.510.000909
noncoding29688G29688TGT11AY.590.00053
noncoding29688G29688TGT11AY.600.000938
noncoding29688G29688TGT11AY.620.000436
noncoding29688G29688TGT11AY.70.000196
noncoding29688G29688TGT11AY.7.10.000113
noncoding29688G29688TGT11AY.7.20.000559
noncoding29688G29688TGT11AY.720.001361
noncoding29688G29688TGT11AY.770.001127
noncoding29688G29688TGT11AY.800.001129
noncoding29688G29688TGT11AY.870.000833
noncoding29688G29688TGT11AY.880.000884
noncoding29688G29688TGT11AY.900.000684
noncoding29688G29688TGT11B.1.1.1610.003534
noncoding29688G29688TGT11B.1.1.2140.000055
noncoding29688G29688TGT11B.1.1.2410.00207
noncoding29688G29688TGT11B.1.1.2820.011628
noncoding29688G29688TGT11B.1.1.3680.003086
noncoding29688G29688TGT11B.1.1.3690.000446
noncoding29688G29688TGT11B.1.1.3720.000689
noncoding29688G29688TGT11B.1.1.3980.003226
noncoding29688G29688TGT11B.1.1.4020.011111
noncoding29688G29688TGT11B.1.1.4040.015873
noncoding29688G29688TGT11B.1.1.4090.002833
noncoding29688G29688TGT11B.1.1.4130.006897
noncoding29688G29688TGT11B.1.1.4190.007407
noncoding29688G29688TGT11B.1.1.4330.001425
noncoding29688G29688TGT11B.1.1.550.012987
noncoding29688G29688TGT11B.1.1.590.006494
noncoding29688G29688TGT11B.1.1.630.000386
noncoding29688G29688TGT11B.1.1260.001276
noncoding29688G29688TGT11B.1.1390.000733
noncoding29688G29688TGT11B.1.160.80.001289
noncoding29688G29688TGT11B.1.177.170.000821
noncoding29688G29688TGT11B.1.177.330.001645
noncoding29688G29688TGT11B.1.177.630.002703
noncoding29688G29688TGT11B.1.177.770.000726
noncoding29688G29688TGT11B.1.177.820.000477
noncoding29688G29688TGT11B.1.1950.005025
noncoding29688G29688TGT11B.1.214.20.0006
noncoding29688G29688TGT11B.1.220.001318
noncoding29688G29688TGT11B.1.2320.000537
noncoding29688G29688TGT11B.1.258.30.001675
noncoding29688G29688TGT11B.1.2650.001271
noncoding29688G29688TGT11B.1.2790.000514
noncoding29688G29688TGT11B.1.3240.001605
noncoding29688G29688TGT11B.1.3960.000706
noncoding29688G29688TGT11B.1.3980.002976
noncoding29688G29688TGT11B.1.3990.001934
noncoding29688G29688TGT11B.1.4080.00369
noncoding29688G29688TGT11B.1.4210.007463
noncoding29688G29688TGT11B.1.4590.004082
noncoding29688G29688TGT11B.1.4680.005714
noncoding29688G29688TGT11B.1.4710.002732
noncoding29688G29688TGT11B.1.4990.00105
noncoding29688G29688TGT11B.1.5030.002488
noncoding29688G29688TGT11B.1.5580.004566
noncoding29688G29688TGT11B.1.5680.001111
noncoding29688G29688TGT11B.1.5880.00091
noncoding29688G29688TGT11B.1.5950.000261
noncoding29688G29688TGT11B.1.5960.000087
noncoding29688G29688TGT11B.1.6020.006536
noncoding29688G29688TGT11B.1.6120.002653
noncoding29688G29688TGT11B.1.617.30.002985
noncoding29688G29688TGT11B.1.9.50.005682
noncoding29688G29688TGT11B.60.00091
noncoding29688G29688TGT11B.600.015873
noncoding29688G29688TGT11C.300.001727
noncoding29688G29688TGT11C.400.027778
noncoding29688G29688TGT11L.30.003546
noncoding29688G29688TGT11P.1.10.000318
noncoding29688G29688TGT11P.1.170.000162
noncoding29688G29688TGT11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.