CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : Mut = G29540A
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29540 | G29540A | noncoding | G | A | 5022 | 5022 | 1 | 29540-29540 |
Details of the mutation G29540A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29540 | G29540A | G | A | 5022 | 5022 | All | 0.000961 |
| noncoding | 29540 | G29540A | G | A | 1486 | 1486 | B.1 | 0.013611 |
| noncoding | 29540 | G29540A | G | A | 1186 | 1186 | AY.4 | 0.001846 |
| noncoding | 29540 | G29540A | G | A | 949 | 949 | B.1.499 | 0.996849 |
| noncoding | 29540 | G29540A | G | A | 394 | 394 | B.1.503 | 0.9801 |
| noncoding | 29540 | G29540A | G | A | 221 | 221 | B.1.505 | 0.969298 |
| noncoding | 29540 | G29540A | G | A | 153 | 153 | B.1.1.7 | 0.000137 |
| noncoding | 29540 | G29540A | G | A | 126 | 126 | B.1.501 | 0.926471 |
| noncoding | 29540 | G29540A | G | A | 83 | 83 | B.1.507 | 0.932584 |
| noncoding | 29540 | G29540A | G | A | 38 | 38 | B.1.508 | 0.974359 |
| noncoding | 29540 | G29540A | G | A | 37 | 37 | B.1.506 | 0.880952 |
| noncoding | 29540 | G29540A | G | A | 35 | 35 | B.1.498 | 0.714286 |
| noncoding | 29540 | G29540A | G | A | 31 | 31 | B.1.504 | 0.96875 |
| noncoding | 29540 | G29540A | G | A | 25 | 25 | B.1.615 | 1 |
| noncoding | 29540 | G29540A | G | A | 24 | 24 | B.1.611 | 0.96 |
| noncoding | 29540 | G29540A | G | A | 22 | 22 | AY.114 | 0.005084 |
| noncoding | 29540 | G29540A | G | A | 21 | 21 | B.1.617.2 | 0.000079 |
| noncoding | 29540 | G29540A | G | A | 19 | 19 | B.1.502 | 1 |
| noncoding | 29540 | G29540A | G | A | 14 | 14 | B.1.500 | 0.736842 |
| noncoding | 29540 | G29540A | G | A | 11 | 11 | AY.4.2 | 0.000239 |
| noncoding | 29540 | G29540A | G | A | 10 | 10 | AY.102 | 0.000265 |
| noncoding | 29540 | G29540A | G | A | 10 | 10 | AY.44 | 0.000061 |
| noncoding | 29540 | G29540A | G | A | 9 | 9 | AY.39 | 0.000222 |
| noncoding | 29540 | G29540A | G | A | 9 | 9 | B.1.499.1 | 1 |
| noncoding | 29540 | G29540A | G | A | 6 | 6 | AY.3 | 0.00006 |
| noncoding | 29540 | G29540A | G | A | 5 | 5 | AY.103 | 0.000031 |
| noncoding | 29540 | G29540A | G | A | 4 | 4 | B.1.1 | 0.000073 |
| noncoding | 29540 | G29540A | G | A | 3 | 3 | AY.43 | 0.000013 |
| noncoding | 29540 | G29540A | G | A | 3 | 3 | B.1.2 | 0.000026 |
| noncoding | 29540 | G29540A | G | A | 3 | 3 | B.1.351 | 0.000089 |
| noncoding | 29540 | G29540A | G | A | 3 | 3 | B.1.362 | 0.004622 |
| noncoding | 29540 | G29540A | G | A | 3 | 3 | B.1.526 | 0.000071 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | AY.110 | 0.000225 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | AY.5 | 0.000041 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | AY.87 | 0.001665 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.1.526 | 0.007092 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.157 | 0.00597 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.160.10 | 0.016129 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.177 | 0.000026 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.177.73 | 0.001133 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.302 | 0.026667 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.36.29 | 0.001035 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.367 | 0.001585 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.439 | 0.011834 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.493 | 0.051282 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.544 | 0.012048 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.595 | 0.000522 |
| noncoding | 29540 | G29540A | G | A | 2 | 2 | B.1.621 | 0.000177 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.100 | 0.000046 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.119 | 0.000035 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.20 | 0.000039 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.29 | 0.000016 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.30 | 0.000396 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.36 | 0.000148 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.42 | 0.00004 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.51 | 0.000909 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.54 | 0.000095 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.65 | 0.000533 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.67 | 0.000464 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | AY.69 | 0.000187 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.128 | 0.007092 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.135 | 0.004695 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.196 | 0.005714 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.214 | 0.000055 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.222 | 0.000204 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.269 | 0.001353 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.27 | 0.00565 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.335 | 0.012987 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.409 | 0.002833 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.440 | 0.011765 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.50 | 0.000679 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.1.519 | 0.00004 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.140 | 0.018868 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.160 | 0.000031 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.177.44 | 0.000519 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.177.63 | 0.002703 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.240 | 0.000216 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.316 | 0.111111 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.36.1 | 0.00114 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.36.16 | 0.001425 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.369 | 0.000285 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.398 | 0.002976 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.429 | 0.000024 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.521 | 0.004975 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.576 | 0.000907 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.582 | 0.000491 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.596 | 0.000087 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.601 | 0.030303 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.625 | 0.002353 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.637 | 0.000073 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.1.9.5 | 0.005682 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | B.6 | 0.00091 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | N.5 | 0.001767 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | P.1 | 0.000016 |
| noncoding | 29540 | G29540A | G | A | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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