CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G26227T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding26227G26227TnoncodingGT36083608126227-26227

Details of the mutation G26227T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding26227G26227TGT36083608All0.00069
noncoding26227G26227TGT13051305AY.40.002031
noncoding26227G26227TGT399399B.1.20.003513
noncoding26227G26227TGT354354B.1.1.70.000317
noncoding26227G26227TGT249249B.1.617.20.000938
noncoding26227G26227TGT119119AY.430.000527
noncoding26227G26227TGT8686AY.50.001776
noncoding26227G26227TGT8585P.10.001339
noncoding26227G26227TGT7979AY.350.018411
noncoding26227G26227TGT6262AY.390.001532
noncoding26227G26227TGT5252B.1.438.21
noncoding26227G26227TGT4949B.10.000449
noncoding26227G26227TGT4040AY.440.000243
noncoding26227G26227TGT3737AY.4.20.000802
noncoding26227G26227TGT3535AY.250.000211
noncoding26227G26227TGT3232B.1.1770.000421
noncoding26227G26227TGT3131B.1.4270.001565
noncoding26227G26227TGT3030AY.1030.000186
noncoding26227G26227TGT2727AY.260.000764
noncoding26227G26227TGT2424AY.30.000239
noncoding26227G26227TGT2424B.1.258.170.002495
noncoding26227G26227TGT2424B.1.5260.000564
noncoding26227G26227TGT2323B.1.3510.000684
noncoding26227G26227TGT2121B.1.10.000381
noncoding26227G26227TGT1818AY.1020.000477
noncoding26227G26227TGT1515AY.420.000603
noncoding26227G26227TGT1414B.1.3010.08284
noncoding26227G26227TGT1313AY.16.10.006109
noncoding26227G26227TGT1313B.1.1.2160.011576
noncoding26227G26227TGT1313B.1.1.5190.000516
noncoding26227G26227TGT1111AY.200.000428
noncoding26227G26227TGT1010AY.1100.001127
noncoding26227G26227TGT99B.1.1.2770.006829
noncoding26227G26227TGT99B.1.2220.015228
noncoding26227G26227TGT88AY.1190.000282
noncoding26227G26227TGT88B.1.2580.000532
noncoding26227G26227TGT88P.1.140.000382
noncoding26227G26227TGT77B.1.1.1890.01059
noncoding26227G26227TGT66AY.220.012552
noncoding26227G26227TGT66AY.740.000694
noncoding26227G26227TGT66B.1.1600.000187
noncoding26227G26227TGT55AY.1080.005513
noncoding26227G26227TGT55AY.230.000349
noncoding26227G26227TGT55AY.4.50.000537
noncoding26227G26227TGT55AY.470.000156
noncoding26227G26227TGT55AY.690.000933
noncoding26227G26227TGT55B.1.2340.00066
noncoding26227G26227TGT55B.1.4290.000118
noncoding26227G26227TGT55R.10.00045
noncoding26227G26227TGT44AY.1130.00057
noncoding26227G26227TGT44AY.290.000063
noncoding26227G26227TGT44AY.360.000593
noncoding26227G26227TGT44AY.610.000419
noncoding26227G26227TGT44AY.880.003537
noncoding26227G26227TGT44AY.980.000316
noncoding26227G26227TGT44B.1.1.4120.030534
noncoding26227G26227TGT44B.1.258.30.0067
noncoding26227G26227TGT44B.1.3770.018265
noncoding26227G26227TGT44C.160.004242
noncoding26227G26227TGT44D.20.0003
noncoding26227G26227TGT33AY.160.001139
noncoding26227G26227TGT33AY.5.40.00083
noncoding26227G26227TGT33AY.750.000168
noncoding26227G26227TGT33AY.90.000203
noncoding26227G26227TGT33B0.000383
noncoding26227G26227TGT33B.1.1.3170.001235
noncoding26227G26227TGT33B.1.1.630.001157
noncoding26227G26227TGT33B.1.177.100.002634
noncoding26227G26227TGT33B.1.177.60.00293
noncoding26227G26227TGT33B.1.3890.003006
noncoding26227G26227TGT33B.1.5750.00091
noncoding26227G26227TGT33C.360.002732
noncoding26227G26227TGT33C.370.000348
noncoding26227G26227TGT22A.20.001324
noncoding26227G26227TGT22AY.1000.000092
noncoding26227G26227TGT22AY.1200.000074
noncoding26227G26227TGT22AY.1210.000271
noncoding26227G26227TGT22AY.130.000322
noncoding26227G26227TGT22AY.410.000588
noncoding26227G26227TGT22AY.46.10.002053
noncoding26227G26227TGT22AY.480.00093
noncoding26227G26227TGT22AY.520.001629
noncoding26227G26227TGT22AY.540.000191
noncoding26227G26227TGT22AY.630.000774
noncoding26227G26227TGT22AY.650.001066
noncoding26227G26227TGT22AY.680.000547
noncoding26227G26227TGT22AY.850.000854
noncoding26227G26227TGT22AY.98.10.000097
noncoding26227G26227TGT22AY.99.20.000184
noncoding26227G26227TGT22B.1.1.2220.000408
noncoding26227G26227TGT22B.1.1.330.000842
noncoding26227G26227TGT22B.1.2210.000142
noncoding26227G26227TGT22B.1.2400.000431
noncoding26227G26227TGT22B.1.3620.003082
noncoding26227G26227TGT22B.1.4990.002101
noncoding26227G26227TGT22B.1.5250.000226
noncoding26227G26227TGT22B.1.617.10.000258
noncoding26227G26227TGT22P.1.150.000465
noncoding26227G26227TGT22P.20.000373
noncoding26227G26227TGT22Q.80.00033
noncoding26227G26227TGT11A.10.000282
noncoding26227G26227TGT11A.30.002096
noncoding26227G26227TGT11AY.1050.000643
noncoding26227G26227TGT11AY.1060.000335
noncoding26227G26227TGT11AY.1160.000287
noncoding26227G26227TGT11AY.1170.000085
noncoding26227G26227TGT11AY.1180.000063
noncoding26227G26227TGT11AY.120.10.000321
noncoding26227G26227TGT11AY.330.000067
noncoding26227G26227TGT11AY.340.000097
noncoding26227G26227TGT11AY.450.000122
noncoding26227G26227TGT11AY.460.000104
noncoding26227G26227TGT11AY.46.60.000072
noncoding26227G26227TGT11AY.530.000288
noncoding26227G26227TGT11AY.550.000917
noncoding26227G26227TGT11AY.590.00053
noncoding26227G26227TGT11AY.60.000041
noncoding26227G26227TGT11AY.620.000436
noncoding26227G26227TGT11AY.640.000595
noncoding26227G26227TGT11AY.700.000209
noncoding26227G26227TGT11AY.75.10.00018
noncoding26227G26227TGT11AY.9.20.000037
noncoding26227G26227TGT11AY.910.00073
noncoding26227G26227TGT11AY.960.002075
noncoding26227G26227TGT11AY.990.001049
noncoding26227G26227TGT11AY.99.10.001553
noncoding26227G26227TGT11B.1.1.1610.003534
noncoding26227G26227TGT11B.1.1.2200.001859
noncoding26227G26227TGT11B.1.1.2690.001353
noncoding26227G26227TGT11B.1.1.280.000311
noncoding26227G26227TGT11B.1.1.3180.000302
noncoding26227G26227TGT11B.1.1.3370.003597
noncoding26227G26227TGT11B.1.1.3480.000796
noncoding26227G26227TGT11B.1.1.3720.000689
noncoding26227G26227TGT11B.1.1.4480.002033
noncoding26227G26227TGT11B.1.1.470.005348
noncoding26227G26227TGT11B.1.1.500.000679
noncoding26227G26227TGT11B.1.1.5140.038462
noncoding26227G26227TGT11B.1.1.5260.003546
noncoding26227G26227TGT11B.1.1.700.000341
noncoding26227G26227TGT11B.1.110.30.000718
noncoding26227G26227TGT11B.1.1700.00431
noncoding26227G26227TGT11B.1.177.150.000631
noncoding26227G26227TGT11B.1.177.380.010417
noncoding26227G26227TGT11B.1.177.50.001242
noncoding26227G26227TGT11B.1.177.600.000218
noncoding26227G26227TGT11B.1.177.790.002342
noncoding26227G26227TGT11B.1.177.810.000189
noncoding26227G26227TGT11B.1.177.830.001481
noncoding26227G26227TGT11B.1.2430.00007
noncoding26227G26227TGT11B.1.351.30.000876
noncoding26227G26227TGT11B.1.36.390.002217
noncoding26227G26227TGT11B.1.4000.000429
noncoding26227G26227TGT11B.1.416.10.001563
noncoding26227G26227TGT11B.1.4380.006536
noncoding26227G26227TGT11B.1.4530.003236
noncoding26227G26227TGT11B.1.4600.017857
noncoding26227G26227TGT11B.1.5510.00129
noncoding26227G26227TGT11B.1.5680.001111
noncoding26227G26227TGT11B.1.5960.000087
noncoding26227G26227TGT11B.1.6250.002353
noncoding26227G26227TGT11B.1.6280.000352
noncoding26227G26227TGT11B.350.007812
noncoding26227G26227TGT11B.6.60.000889
noncoding26227G26227TGT11C.260.007353
noncoding26227G26227TGT11C.37.10.002618
noncoding26227G26227TGT11K.10.02381
noncoding26227G26227TGT11N.50.001767
noncoding26227G26227TGT11P.1.70.000319
noncoding26227G26227TGT11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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