CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G204T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding204G204TnoncodingGT92742927421204-204

Details of the mutation G204T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding204G204TGT9274292742All0.017738
noncoding204G204TGT3880038800B.1.1770.510903
noncoding204G204TGT1281812818B.1.177.210.980194
noncoding204G204TGT58925892B.1.177.70.971316
noncoding204G204TGT53155315B.1.177.860.97505
noncoding204G204TGT44594459B.1.177.600.974006
noncoding204G204TGT34213421B.1.177.570.961225
noncoding204G204TGT26472647AY.40.00412
noncoding204G204TGT15571557B.1.177.540.944209
noncoding204G204TGT14871487B.1.177.650.989355
noncoding204G204TGT13691369B.1.177.560.913885
noncoding204G204TGT13601360B.1.177.770.987654
noncoding204G204TGT12841284B.1.177.80.96614
noncoding204G204TGT959959B.1.177.60.936523
noncoding204G204TGT889889B.1.3110.244097
noncoding204G204TGT817817B.1.177.620.973778
noncoding204G204TGT773773B.10.00708
noncoding204G204TGT772772B.1.177.50.959006
noncoding204G204TGT718718B.1.617.20.002704
noncoding204G204TGT696696B.1.177.580.926764
noncoding204G204TGT518518B.1.1600.016155
noncoding204G204TGT517517B.1.177.800.988528
noncoding204G204TGT424424AY.430.001879
noncoding204G204TGT417417B.1.177.790.976581
noncoding204G204TGT401401B.1.177.550.934732
noncoding204G204TGT363363B.1.177.630.981081
noncoding204G204TGT302302B.1.177.480.94375
noncoding204G204TGT282282AY.440.001716
noncoding204G204TGT255255AY.1030.001583
noncoding204G204TGT253253U.30.976834
noncoding204G204TGT237237B.1.1.70.000212
noncoding204G204TGT214214B.1.4270.010806
noncoding204G204TGT154154B.1.1.4870.860335
noncoding204G204TGT148148B.1.3510.0044
noncoding204G204TGT127127B.1.177.670.969466
noncoding204G204TGT114114U.21
noncoding204G204TGT9696B.1.1.10.031362
noncoding204G204TGT8686B.1.110.30.061782
noncoding204G204TGT8080AY.1000.003681
noncoding204G204TGT7474B.1.10.001342
noncoding204G204TGT7070B.1.177.470.909091
noncoding204G204TGT7070U.10.897436
noncoding204G204TGT6767B.1.20.00059
noncoding204G204TGT6565B.1.177.680.984848
noncoding204G204TGT6363B.1.2340.008312
noncoding204G204TGT5757B.1.177.590.919355
noncoding204G204TGT5252AY.4.20.001128
noncoding204G204TGT4040V.10.909091
noncoding204G204TGT3838AY.530.010926
noncoding204G204TGT3232B.1.2580.00213
noncoding204G204TGT3131B.1.1390.022727
noncoding204G204TGT3030N.40.12766
noncoding204G204TGT2828AY.250.000168
noncoding204G204TGT2828B.1.1.4200.028169
noncoding204G204TGT2727AY.260.000764
noncoding204G204TGT2727AY.29.10.005954
noncoding204G204TGT2525B.1.1.1001
noncoding204G204TGT2424B.1.177.661
noncoding204G204TGT2424P.10.000378
noncoding204G204TGT2323AY.980.001817
noncoding204G204TGT2222V.20.709677
noncoding204G204TGT2121B.1.177.610.913043
noncoding204G204TGT2121B.1.6280.0074
noncoding204G204TGT2121Q.30.003046
noncoding204G204TGT2020AY.130.00322
noncoding204G204TGT2020B.1.1.5190.000794
noncoding204G204TGT1919AY.390.00047
noncoding204G204TGT1919AY.60.000781
noncoding204G204TGT1616B.1.177.90.021305
noncoding204G204TGT1515B.1.2210.001065
noncoding204G204TGT1414AY.750.000784
noncoding204G204TGT1313B.1.1.500.008826
noncoding204G204TGT1212AY.30.000119
noncoding204G204TGT1212AY.50.000248
noncoding204G204TGT1212B.1.3700.096
noncoding204G204TGT1111B0.001406
noncoding204G204TGT1111B.1.1.2160.009795
noncoding204G204TGT1111B.1.1.4580.458333
noncoding204G204TGT1111B.1.177.641
noncoding204G204TGT1010AY.46.30.009337
noncoding204G204TGT99AY.9.10.000754
noncoding204G204TGT99B.1.1.3060.003946
noncoding204G204TGT99B.1.177.460.008264
noncoding204G204TGT99B.1.177.730.005096
noncoding204G204TGT88AY.1020.000212
noncoding204G204TGT88AY.200.000311
noncoding204G204TGT88AY.290.000126
noncoding204G204TGT88AY.420.000322
noncoding204G204TGT88AY.470.000249
noncoding204G204TGT88B.1.177.150.005047
noncoding204G204TGT88B.1.617.10.001032
noncoding204G204TGT77AY.1190.000247
noncoding204G204TGT77B.1.1.2220.001428
noncoding204G204TGT77B.1.1.4340.00244
noncoding204G204TGT77B.1.177.40.001477
noncoding204G204TGT77B.1.177.440.003633
noncoding204G204TGT77B.1.5960.00061
noncoding204G204TGT77B.4.10.132075
noncoding204G204TGT66AY.1060.002009
noncoding204G204TGT66AY.98.10.000291
noncoding204G204TGT66B.1.1.1740.02027
noncoding204G204TGT66B.1.36.390.013304
noncoding204G204TGT66Q.20.003681
noncoding204G204TGT55A0.001935
noncoding204G204TGT55AY.1180.000313
noncoding204G204TGT55AY.9.20.000184
noncoding204G204TGT55B.1.1.370.000964
noncoding204G204TGT55C.370.00058
noncoding204G204TGT44AY.10.001583
noncoding204G204TGT44AY.1140.000924
noncoding204G204TGT44AY.1200.000149
noncoding204G204TGT44AY.140.000352
noncoding204G204TGT44AY.230.000279
noncoding204G204TGT44AY.330.000267
noncoding204G204TGT44AY.610.000419
noncoding204G204TGT44AY.99.20.000369
noncoding204G204TGT44B.1.1.3850.017857
noncoding204G204TGT44B.1.177.160.002658
noncoding204G204TGT44B.1.177.500.018779
noncoding204G204TGT44B.1.2400.000862
noncoding204G204TGT44B.1.3670.00317
noncoding204G204TGT44B.1.3890.004008
noncoding204G204TGT44B.1.6120.01061
noncoding204G204TGT33A.2.5.20.004717
noncoding204G204TGT33AY.1050.001929
noncoding204G204TGT33AY.1160.00086
noncoding204G204TGT33AY.240.001293
noncoding204G204TGT33AY.3.10.000256
noncoding204G204TGT33AY.360.000445
noncoding204G204TGT33AY.4.2.10.000447
noncoding204G204TGT33AY.46.60.000217
noncoding204G204TGT33AY.570.001969
noncoding204G204TGT33B.1.1.2770.002276
noncoding204G204TGT33B.1.1.280.000934
noncoding204G204TGT33B.1.1.2940.003797
noncoding204G204TGT33B.1.1.3150.025424
noncoding204G204TGT33B.1.1.3260.005282
noncoding204G204TGT33B.1.1700.012931
noncoding204G204TGT33B.1.177.120.000455
noncoding204G204TGT33B.1.177.310.034483
noncoding204G204TGT33B.1.177.810.000568
noncoding204G204TGT33B.1.351.20.000908
noncoding204G204TGT33B.1.4700.004213
noncoding204G204TGT33B.1.6310.010101
noncoding204G204TGT33B.1.6370.000219
noncoding204G204TGT33C.360.002732
noncoding204G204TGT33P.1.140.000143
noncoding204G204TGT33Q.10.000379
noncoding204G204TGT22AY.1100.000225
noncoding204G204TGT22AY.120.000632
noncoding204G204TGT22AY.270.000129
noncoding204G204TGT22AY.340.000194
noncoding204G204TGT22AY.350.000466
noncoding204G204TGT22AY.460.000208
noncoding204G204TGT22AY.46.20.001271
noncoding204G204TGT22AY.5.40.000553
noncoding204G204TGT22B.1.1.1280.014184
noncoding204G204TGT22B.1.1.1410.004024
noncoding204G204TGT22B.1.1.250.001137
noncoding204G204TGT22B.1.1.390.001019
noncoding204G204TGT22B.1.1.4450.074074
noncoding204G204TGT22B.1.1.700.000682
noncoding204G204TGT22B.1.1110.00235
noncoding204G204TGT22B.1.160.280.005848
noncoding204G204TGT22B.1.177.170.001642
noncoding204G204TGT22B.1.177.530.004785
noncoding204G204TGT22B.1.2060.001631
noncoding204G204TGT22B.1.220.002635
noncoding204G204TGT22B.1.2220.003384
noncoding204G204TGT22B.1.2430.000139
noncoding204G204TGT22B.1.2790.001027
noncoding204G204TGT22B.1.3490.00143
noncoding204G204TGT22B.1.360.000292
noncoding204G204TGT22B.1.36.10.002281
noncoding204G204TGT22B.1.3750.001639
noncoding204G204TGT22B.1.4290.000047
noncoding204G204TGT22B.1.5170.000854
noncoding204G204TGT22B.1.5260.000047
noncoding204G204TGT22B.1.5300.014286
noncoding204G204TGT22B.1.5770.001375
noncoding204G204TGT22B.1.6090.000959
noncoding204G204TGT22B.1.6210.000177
noncoding204G204TGT22B.1.6320.013423
noncoding204G204TGT22B.60.00182
noncoding204G204TGT22B.6.80.016529
noncoding204G204TGT22C.160.002121
noncoding204G204TGT22D.20.00015
noncoding204G204TGT22P.1.150.000465
noncoding204G204TGT22Z.10.00578
noncoding204G204TGT11A.23.10.000704
noncoding204G204TGT11AD.20.000219
noncoding204G204TGT11AK.10.012658
noncoding204G204TGT11AU.30.00211
noncoding204G204TGT11AY.1090.00074
noncoding204G204TGT11AY.160.00038
noncoding204G204TGT11AY.23.10.000417
noncoding204G204TGT11AY.380.000499
noncoding204G204TGT11AY.39.10.00004
noncoding204G204TGT11AY.4.30.000842
noncoding204G204TGT11AY.4.40.000409
noncoding204G204TGT11AY.4.50.000107
noncoding204G204TGT11AY.450.000122
noncoding204G204TGT11AY.46.40.000165
noncoding204G204TGT11AY.46.50.000198
noncoding204G204TGT11AY.480.000465
noncoding204G204TGT11AY.5.30.000337
noncoding204G204TGT11AY.500.000799
noncoding204G204TGT11AY.540.000095
noncoding204G204TGT11AY.870.000833
noncoding204G204TGT11AY.920.000287
noncoding204G204TGT11AY.930.000273
noncoding204G204TGT11AZ.20.000821
noncoding204G204TGT11AZ.50.003509
noncoding204G204TGT11B.1.1.1210.002427
noncoding204G204TGT11B.1.1.1530.001095
noncoding204G204TGT11B.1.1.1610.003534
noncoding204G204TGT11B.1.1.1980.001468
noncoding204G204TGT11B.1.1.2200.001859
noncoding204G204TGT11B.1.1.2310.003096
noncoding204G204TGT11B.1.1.2400.004695
noncoding204G204TGT11B.1.1.2860.002899
noncoding204G204TGT11B.1.1.2910.000742
noncoding204G204TGT11B.1.1.3110.000358
noncoding204G204TGT11B.1.1.3170.000412
noncoding204G204TGT11B.1.1.3280.016949
noncoding204G204TGT11B.1.1.3430.020833
noncoding204G204TGT11B.1.1.3480.000796
noncoding204G204TGT11B.1.1.3720.000689
noncoding204G204TGT11B.1.1.3740.002375
noncoding204G204TGT11B.1.1.3990.090909
noncoding204G204TGT11B.1.1.4020.011111
noncoding204G204TGT11B.1.1.4190.007407
noncoding204G204TGT11B.1.1.4330.001425
noncoding204G204TGT11B.1.1.440.00241
noncoding204G204TGT11B.1.1.4660.008696
noncoding204G204TGT11B.1.1.580.005376
noncoding204G204TGT11B.1.1.630.000386
noncoding204G204TGT11B.1.1190.010526
noncoding204G204TGT11B.1.1470.000756
noncoding204G204TGT11B.1.1490.003425
noncoding204G204TGT11B.1.160.310.008065
noncoding204G204TGT11B.1.160.80.001289
noncoding204G204TGT11B.1.177.110.001698
noncoding204G204TGT11B.1.177.200.001517
noncoding204G204TGT11B.1.177.320.00135
noncoding204G204TGT11B.1.177.510.004566
noncoding204G204TGT11B.1.177.690.001484
noncoding204G204TGT11B.1.1950.005025
noncoding204G204TGT11B.1.2100.002132
noncoding204G204TGT11B.1.214.10.02
noncoding204G204TGT11B.1.214.20.0006
noncoding204G204TGT11B.1.221.40.004167
noncoding204G204TGT11B.1.258.170.000104
noncoding204G204TGT11B.1.258.70.001912
noncoding204G204TGT11B.1.2600.003344
noncoding204G204TGT11B.1.3200.001245
noncoding204G204TGT11B.1.3280.03125
noncoding204G204TGT11B.1.351.30.000876
noncoding204G204TGT11B.1.36.170.000494
noncoding204G204TGT11B.1.3620.001541
noncoding204G204TGT11B.1.3690.000285
noncoding204G204TGT11B.1.4040.001302
noncoding204G204TGT11B.1.4170.028571
noncoding204G204TGT11B.1.4230.010204
noncoding204G204TGT11B.1.4590.004082
noncoding204G204TGT11B.1.4680.005714
noncoding204G204TGT11B.1.4690.00361
noncoding204G204TGT11B.1.4730.019231
noncoding204G204TGT11B.1.4970.000315
noncoding204G204TGT11B.1.5250.000113
noncoding204G204TGT11B.1.5400.009709
noncoding204G204TGT11B.1.5640.000426
noncoding204G204TGT11B.1.5660.019231
noncoding204G204TGT11B.1.5760.000907
noncoding204G204TGT11B.1.5950.000261
noncoding204G204TGT11B.1.5970.00463
noncoding204G204TGT11B.1.6060.006024
noncoding204G204TGT11B.1.621.10.000506
noncoding204G204TGT11B.1.6230.000536
noncoding204G204TGT11B.1.6270.00202
noncoding204G204TGT11B.1.9.40.006135
noncoding204G204TGT11B.1.940.027027
noncoding204G204TGT11B.280.003279
noncoding204G204TGT11B.310.003731
noncoding204G204TGT11B.6.60.000889
noncoding204G204TGT11C.10.002392
noncoding204G204TGT11K.10.02381
noncoding204G204TGT11P.1.170.000162
noncoding204G204TGT11P.1.90.004808
noncoding204G204TGT11Q.80.000165
noncoding204G204TGT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.