CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G174C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding174G174CnoncodingGC203320331174-174

Details of the mutation G174C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding174G174CGC20332033All0.000389
noncoding174G174CGC777777AU.10.983544
noncoding174G174CGC291291AY.430.001289
noncoding174G174CGC250250B.1.1.70.000224
noncoding174G174CGC7575AY.40.000117
noncoding174G174CGC6161B.1.617.20.00023
noncoding174G174CGC5858AY.200.002254
noncoding174G174CGC4747AY.99.20.004331
noncoding174G174CGC3838B.1.20.000335
noncoding174G174CGC3232AY.920.009193
noncoding174G174CGC2323AY.440.00014
noncoding174G174CGC2020B.10.000183
noncoding174G174CGC1919AY.230.001325
noncoding174G174CGC1919AY.390.00047
noncoding174G174CGC1818AY.290.000284
noncoding174G174CGC1717B.1.5960.001481
noncoding174G174CGC1515B.1.4270.000757
noncoding174G174CGC1515B.1.466.20.005869
noncoding174G174CGC1313AY.250.000078
noncoding174G174CGC1313P.10.000205
noncoding174G174CGC1111AY.1020.000292
noncoding174G174CGC1111AY.150.024444
noncoding174G174CGC1111AY.420.000443
noncoding174G174CGC99AY.260.000255
noncoding174G174CGC88AY.1030.00005
noncoding174G174CGC88B.1.2580.000532
noncoding174G174CGC77B.1.1.3720.004821
noncoding174G174CGC77B.1.360.001021
noncoding174G174CGC66AY.460.000624
noncoding174G174CGC66AY.470.000187
noncoding174G174CGC66AY.530.001725
noncoding174G174CGC66B.1.10.000109
noncoding174G174CGC55AY.1190.000177
noncoding174G174CGC55AY.30.00005
noncoding174G174CGC55B.1.1770.000066
noncoding174G174CGC55B.1.2400.001078
noncoding174G174CGC44AY.1210.000541
noncoding174G174CGC44B.1.6090.001918
noncoding174G174CGC33AD.20.000657
noncoding174G174CGC33AY.330.0002
noncoding174G174CGC33AY.4.20.000065
noncoding174G174CGC33AY.46.10.00308
noncoding174G174CGC33B.1.1.3120.005736
noncoding174G174CGC33B.1.1.5190.000119
noncoding174G174CGC33B.1.1.700.001023
noncoding174G174CGC33B.1.177.180.00348
noncoding174G174CGC33B.1.2430.000209
noncoding174G174CGC33B.1.3510.000089
noncoding174G174CGC33B.1.5880.00273
noncoding174G174CGC33B.1.6280.001057
noncoding174G174CGC33P.1.160.001122
noncoding174G174CGC33P.20.00056
noncoding174G174CGC22A0.000774
noncoding174G174CGC22AY.1000.000092
noncoding174G174CGC22AY.46.20.001271
noncoding174G174CGC22AY.610.00021
noncoding174G174CGC22AY.75.10.000361
noncoding174G174CGC22B.1.177.570.000562
noncoding174G174CGC22B.1.2600.006689
noncoding174G174CGC22B.1.4250.005988
noncoding174G174CGC22B.1.4290.000047
noncoding174G174CGC22B.1.4590.008163
noncoding174G174CGC22B.1.5240.002813
noncoding174G174CGC22B.1.5260.000047
noncoding174G174CGC22B.1.617.10.000258
noncoding174G174CGC22N.40.008511
noncoding174G174CGC22P.1.140.000096
noncoding174G174CGC11AE.80.000489
noncoding174G174CGC11AY.1180.000063
noncoding174G174CGC11AY.1200.000037
noncoding174G174CGC11AY.29.10.000221
noncoding174G174CGC11AY.3.10.000085
noncoding174G174CGC11AY.300.000396
noncoding174G174CGC11AY.340.000097
noncoding174G174CGC11AY.380.000499
noncoding174G174CGC11AY.4.50.000107
noncoding174G174CGC11AY.400.000964
noncoding174G174CGC11AY.5.30.000337
noncoding174G174CGC11AY.590.00053
noncoding174G174CGC11AY.710.000475
noncoding174G174CGC11AY.790.001211
noncoding174G174CGC11B0.000128
noncoding174G174CGC11B.1.1.2940.001266
noncoding174G174CGC11B.1.1.3010.001179
noncoding174G174CGC11B.1.1.3060.000438
noncoding174G174CGC11B.1.1.3150.008475
noncoding174G174CGC11B.1.110.30.000718
noncoding174G174CGC11B.1.1490.003425
noncoding174G174CGC11B.1.1600.000031
noncoding174G174CGC11B.1.177.440.000519
noncoding174G174CGC11B.1.177.650.000665
noncoding174G174CGC11B.1.220.001318
noncoding174G174CGC11B.1.2220.001692
noncoding174G174CGC11B.1.258.170.000104
noncoding174G174CGC11B.1.3690.000285
noncoding174G174CGC11B.1.3750.00082
noncoding174G174CGC11B.1.4620.007246
noncoding174G174CGC11B.1.4740.001901
noncoding174G174CGC11B.1.5230.002451
noncoding174G174CGC11B.1.5250.000113
noncoding174G174CGC11B.1.5700.002941
noncoding174G174CGC11D.20.000075
noncoding174G174CGC11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.