CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 105 | G105T | noncoding | G | T | 5922 | 5922 | 1 | 105-105 |
Details of the mutation G105T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 105 | G105T | G | T | 5922 | 5922 | All | 0.001133 |
noncoding | 105 | G105T | G | T | 2677 | 2677 | AY.68 | 0.732822 |
noncoding | 105 | G105T | G | T | 692 | 692 | B.1.1.7 | 0.000619 |
noncoding | 105 | G105T | G | T | 668 | 668 | AY.13 | 0.107534 |
noncoding | 105 | G105T | G | T | 225 | 225 | B.1 | 0.002061 |
noncoding | 105 | G105T | G | T | 218 | 218 | B.1.618 | 0.879032 |
noncoding | 105 | G105T | G | T | 120 | 120 | B.1.617.2 | 0.000452 |
noncoding | 105 | G105T | G | T | 71 | 71 | AY.4 | 0.000111 |
noncoding | 105 | G105T | G | T | 70 | 70 | AY.39 | 0.00173 |
noncoding | 105 | G105T | G | T | 68 | 68 | B.1.516 | 0.133072 |
noncoding | 105 | G105T | G | T | 61 | 61 | AY.98.1 | 0.002954 |
noncoding | 105 | G105T | G | T | 57 | 57 | B.1.2 | 0.000502 |
noncoding | 105 | G105T | G | T | 51 | 51 | AY.44 | 0.00031 |
noncoding | 105 | G105T | G | T | 51 | 51 | P.1.14 | 0.002438 |
noncoding | 105 | G105T | G | T | 49 | 49 | P.1 | 0.000772 |
noncoding | 105 | G105T | G | T | 38 | 38 | B.1.429 | 0.000894 |
noncoding | 105 | G105T | G | T | 37 | 37 | AY.14 | 0.003256 |
noncoding | 105 | G105T | G | T | 37 | 37 | AY.43 | 0.000164 |
noncoding | 105 | G105T | G | T | 29 | 29 | B.1.22 | 0.038208 |
noncoding | 105 | G105T | G | T | 29 | 29 | B.1.351 | 0.000862 |
noncoding | 105 | G105T | G | T | 28 | 28 | AY.25 | 0.000168 |
noncoding | 105 | G105T | G | T | 27 | 27 | B.1.1 | 0.00049 |
noncoding | 105 | G105T | G | T | 25 | 25 | B.1.177 | 0.000329 |
noncoding | 105 | G105T | G | T | 24 | 24 | B.1.1.33 | 0.010101 |
noncoding | 105 | G105T | G | T | 23 | 23 | AY.103 | 0.000143 |
noncoding | 105 | G105T | G | T | 19 | 19 | AY.33 | 0.001269 |
noncoding | 105 | G105T | G | T | 18 | 18 | B.1.1.519 | 0.000715 |
noncoding | 105 | G105T | G | T | 17 | 17 | AY.102 | 0.000451 |
noncoding | 105 | G105T | G | T | 15 | 15 | B.1.160 | 0.000468 |
noncoding | 105 | G105T | G | T | 15 | 15 | B.1.160.16 | 0.013941 |
noncoding | 105 | G105T | G | T | 15 | 15 | B.1.582 | 0.00736 |
noncoding | 105 | G105T | G | T | 15 | 15 | R.1 | 0.00135 |
noncoding | 105 | G105T | G | T | 14 | 14 | AY.3 | 0.000139 |
noncoding | 105 | G105T | G | T | 14 | 14 | B.1.258.17 | 0.001456 |
noncoding | 105 | G105T | G | T | 13 | 13 | AY.119 | 0.000459 |
noncoding | 105 | G105T | G | T | 12 | 12 | B.1.526 | 0.000282 |
noncoding | 105 | G105T | G | T | 11 | 11 | AY.46.2 | 0.006989 |
noncoding | 105 | G105T | G | T | 11 | 11 | B.1.369 | 0.003137 |
noncoding | 105 | G105T | G | T | 10 | 10 | AY.46.4 | 0.001645 |
noncoding | 105 | G105T | G | T | 10 | 10 | B.1.1.25 | 0.005685 |
noncoding | 105 | G105T | G | T | 10 | 10 | B.1.1.37 | 0.001929 |
noncoding | 105 | G105T | G | T | 9 | 9 | AY.23 | 0.000628 |
noncoding | 105 | G105T | G | T | 9 | 9 | AY.29 | 0.000142 |
noncoding | 105 | G105T | G | T | 9 | 9 | B.1.177.82 | 0.004296 |
noncoding | 105 | G105T | G | T | 9 | 9 | B.1.36 | 0.001313 |
noncoding | 105 | G105T | G | T | 8 | 8 | AY.54 | 0.000763 |
noncoding | 105 | G105T | G | T | 7 | 7 | B.1.1.1 | 0.002287 |
noncoding | 105 | G105T | G | T | 7 | 7 | B.1.1.176 | 0.003076 |
noncoding | 105 | G105T | G | T | 7 | 7 | B.1.504 | 0.21875 |
noncoding | 105 | G105T | G | T | 6 | 6 | AY.7.1 | 0.000676 |
noncoding | 105 | G105T | G | T | 6 | 6 | AY.75 | 0.000336 |
noncoding | 105 | G105T | G | T | 6 | 6 | B.1.617.1 | 0.000774 |
noncoding | 105 | G105T | G | T | 5 | 5 | AY.47 | 0.000156 |
noncoding | 105 | G105T | G | T | 5 | 5 | AY.80 | 0.005643 |
noncoding | 105 | G105T | G | T | 5 | 5 | AY.98 | 0.000395 |
noncoding | 105 | G105T | G | T | 5 | 5 | AY.99 | 0.005247 |
noncoding | 105 | G105T | G | T | 5 | 5 | B.1.215 | 0.048077 |
noncoding | 105 | G105T | G | T | 4 | 4 | A.2.5 | 0.001996 |
noncoding | 105 | G105T | G | T | 4 | 4 | AY.29.1 | 0.000882 |
noncoding | 105 | G105T | G | T | 4 | 4 | AY.5 | 0.000083 |
noncoding | 105 | G105T | G | T | 4 | 4 | AY.9.1 | 0.000335 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.1.280 | 0.012346 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.1.464 | 0.005891 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.1.57 | 0.045977 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.177.5 | 0.004969 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.362 | 0.006163 |
noncoding | 105 | G105T | G | T | 4 | 4 | B.1.427 | 0.000202 |
noncoding | 105 | G105T | G | T | 4 | 4 | C.36.3 | 0.002269 |
noncoding | 105 | G105T | G | T | 4 | 4 | C.37 | 0.000464 |
noncoding | 105 | G105T | G | T | 4 | 4 | P.2 | 0.000747 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.100 | 0.000138 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.104 | 0.005952 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.26 | 0.000085 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.39.1.1 | 0.002174 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.45 | 0.000365 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.86 | 0.00249 |
noncoding | 105 | G105T | G | T | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 105 | G105T | G | T | 3 | 3 | AZ.3 | 0.004559 |
noncoding | 105 | G105T | G | T | 3 | 3 | B.1.1.214 | 0.000166 |
noncoding | 105 | G105T | G | T | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 105 | G105T | G | T | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 105 | G105T | G | T | 3 | 3 | B.1.36.29 | 0.001552 |
noncoding | 105 | G105T | G | T | 3 | 3 | B.1.473 | 0.057692 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.111 | 0.000366 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.117 | 0.000169 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.118 | 0.000125 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.16.1 | 0.00094 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.20 | 0.000078 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.4.2 | 0.000043 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.46 | 0.000208 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.52 | 0.001629 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.53 | 0.000575 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.6 | 0.000082 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.61 | 0.00021 |
noncoding | 105 | G105T | G | T | 2 | 2 | AY.62 | 0.000871 |
noncoding | 105 | G105T | G | T | 2 | 2 | B | 0.000256 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.1.311 | 0.000716 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.1.54 | 0.006042 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.219 | 0.018868 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.240 | 0.000431 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.36.24 | 0.012346 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.391 | 0.002255 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.408 | 0.00738 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.459 | 0.008163 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.627 | 0.00404 |
noncoding | 105 | G105T | G | T | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 105 | G105T | G | T | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 105 | G105T | G | T | 2 | 2 | Q.8 | 0.00033 |
noncoding | 105 | G105T | G | T | 1 | 1 | AD.2 | 0.000219 |
noncoding | 105 | G105T | G | T | 1 | 1 | AL.1 | 0.012987 |
noncoding | 105 | G105T | G | T | 1 | 1 | AU.2 | 0.002421 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.106 | 0.000335 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.12 | 0.000316 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.120 | 0.000037 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.120.2 | 0.001285 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.121 | 0.000135 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.42 | 0.00004 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.58 | 0.000907 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.59 | 0.00053 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.92 | 0.000287 |
noncoding | 105 | G105T | G | T | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.243 | 0.004082 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.329 | 0.003846 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.453 | 0.008475 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.1.55 | 0.012987 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.147 | 0.000756 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.160.24 | 0.004425 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.18 | 0.00116 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.177.79 | 0.002342 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.235 | 0.002519 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.239 | 0.001221 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.36.22 | 0.001208 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.36.25 | 0.002208 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.360 | 0.012658 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.371 | 0.001122 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.385 | 0.010638 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.390 | 0.010638 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.533 | 0.009615 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.589 | 0.007576 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.23 | 0.002924 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.6.8 | 0.008264 |
noncoding | 105 | G105T | G | T | 1 | 1 | B.61 | 0.005747 |
noncoding | 105 | G105T | G | T | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 105 | G105T | G | T | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 105 | G105T | G | T | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 105 | G105T | G | T | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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