CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = G105T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	105	G105T		noncoding	G	T	5922	5922	1	105-105

Details of the mutation G105T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	105	G105T	G	T	5922	5922	All	0.001133
noncoding	105	G105T	G	T	2677	2677	AY.68	0.732822
noncoding	105	G105T	G	T	692	692	B.1.1.7	0.000619
noncoding	105	G105T	G	T	668	668	AY.13	0.107534
noncoding	105	G105T	G	T	225	225	B.1	0.002061
noncoding	105	G105T	G	T	218	218	B.1.618	0.879032
noncoding	105	G105T	G	T	120	120	B.1.617.2	0.000452
noncoding	105	G105T	G	T	71	71	AY.4	0.000111
noncoding	105	G105T	G	T	70	70	AY.39	0.00173
noncoding	105	G105T	G	T	68	68	B.1.516	0.133072
noncoding	105	G105T	G	T	61	61	AY.98.1	0.002954
noncoding	105	G105T	G	T	57	57	B.1.2	0.000502
noncoding	105	G105T	G	T	51	51	AY.44	0.00031
noncoding	105	G105T	G	T	51	51	P.1.14	0.002438
noncoding	105	G105T	G	T	49	49	P.1	0.000772
noncoding	105	G105T	G	T	38	38	B.1.429	0.000894
noncoding	105	G105T	G	T	37	37	AY.14	0.003256
noncoding	105	G105T	G	T	37	37	AY.43	0.000164
noncoding	105	G105T	G	T	29	29	B.1.22	0.038208
noncoding	105	G105T	G	T	29	29	B.1.351	0.000862
noncoding	105	G105T	G	T	28	28	AY.25	0.000168
noncoding	105	G105T	G	T	27	27	B.1.1	0.00049
noncoding	105	G105T	G	T	25	25	B.1.177	0.000329
noncoding	105	G105T	G	T	24	24	B.1.1.33	0.010101
noncoding	105	G105T	G	T	23	23	AY.103	0.000143
noncoding	105	G105T	G	T	19	19	AY.33	0.001269
noncoding	105	G105T	G	T	18	18	B.1.1.519	0.000715
noncoding	105	G105T	G	T	17	17	AY.102	0.000451
noncoding	105	G105T	G	T	15	15	B.1.160	0.000468
noncoding	105	G105T	G	T	15	15	B.1.160.16	0.013941
noncoding	105	G105T	G	T	15	15	B.1.582	0.00736
noncoding	105	G105T	G	T	15	15	R.1	0.00135
noncoding	105	G105T	G	T	14	14	AY.3	0.000139
noncoding	105	G105T	G	T	14	14	B.1.258.17	0.001456
noncoding	105	G105T	G	T	13	13	AY.119	0.000459
noncoding	105	G105T	G	T	12	12	B.1.526	0.000282
noncoding	105	G105T	G	T	11	11	AY.46.2	0.006989
noncoding	105	G105T	G	T	11	11	B.1.369	0.003137
noncoding	105	G105T	G	T	10	10	AY.46.4	0.001645
noncoding	105	G105T	G	T	10	10	B.1.1.25	0.005685
noncoding	105	G105T	G	T	10	10	B.1.1.37	0.001929
noncoding	105	G105T	G	T	9	9	AY.23	0.000628
noncoding	105	G105T	G	T	9	9	AY.29	0.000142
noncoding	105	G105T	G	T	9	9	B.1.177.82	0.004296
noncoding	105	G105T	G	T	9	9	B.1.36	0.001313
noncoding	105	G105T	G	T	8	8	AY.54	0.000763
noncoding	105	G105T	G	T	7	7	B.1.1.1	0.002287
noncoding	105	G105T	G	T	7	7	B.1.1.176	0.003076
noncoding	105	G105T	G	T	7	7	B.1.504	0.21875
noncoding	105	G105T	G	T	6	6	AY.7.1	0.000676
noncoding	105	G105T	G	T	6	6	AY.75	0.000336
noncoding	105	G105T	G	T	6	6	B.1.617.1	0.000774
noncoding	105	G105T	G	T	5	5	AY.47	0.000156
noncoding	105	G105T	G	T	5	5	AY.80	0.005643
noncoding	105	G105T	G	T	5	5	AY.98	0.000395
noncoding	105	G105T	G	T	5	5	AY.99	0.005247
noncoding	105	G105T	G	T	5	5	B.1.215	0.048077
noncoding	105	G105T	G	T	4	4	A.2.5	0.001996
noncoding	105	G105T	G	T	4	4	AY.29.1	0.000882
noncoding	105	G105T	G	T	4	4	AY.5	0.000083
noncoding	105	G105T	G	T	4	4	AY.9.1	0.000335
noncoding	105	G105T	G	T	4	4	B.1.1.280	0.012346
noncoding	105	G105T	G	T	4	4	B.1.1.464	0.005891
noncoding	105	G105T	G	T	4	4	B.1.1.57	0.045977
noncoding	105	G105T	G	T	4	4	B.1.177.5	0.004969
noncoding	105	G105T	G	T	4	4	B.1.258	0.000266
noncoding	105	G105T	G	T	4	4	B.1.362	0.006163
noncoding	105	G105T	G	T	4	4	B.1.427	0.000202
noncoding	105	G105T	G	T	4	4	C.36.3	0.002269
noncoding	105	G105T	G	T	4	4	C.37	0.000464
noncoding	105	G105T	G	T	4	4	P.2	0.000747
noncoding	105	G105T	G	T	3	3	AY.100	0.000138
noncoding	105	G105T	G	T	3	3	AY.104	0.005952
noncoding	105	G105T	G	T	3	3	AY.26	0.000085
noncoding	105	G105T	G	T	3	3	AY.3.1	0.000256
noncoding	105	G105T	G	T	3	3	AY.39.1.1	0.002174
noncoding	105	G105T	G	T	3	3	AY.45	0.000365
noncoding	105	G105T	G	T	3	3	AY.86	0.00249
noncoding	105	G105T	G	T	3	3	AY.9.2	0.00011
noncoding	105	G105T	G	T	3	3	AZ.3	0.004559
noncoding	105	G105T	G	T	3	3	B.1.1.214	0.000166
noncoding	105	G105T	G	T	3	3	B.1.1.216	0.002671
noncoding	105	G105T	G	T	3	3	B.1.1.28	0.000934
noncoding	105	G105T	G	T	3	3	B.1.36.29	0.001552
noncoding	105	G105T	G	T	3	3	B.1.473	0.057692
noncoding	105	G105T	G	T	2	2	AY.111	0.000366
noncoding	105	G105T	G	T	2	2	AY.117	0.000169
noncoding	105	G105T	G	T	2	2	AY.118	0.000125
noncoding	105	G105T	G	T	2	2	AY.16	0.000759
noncoding	105	G105T	G	T	2	2	AY.16.1	0.00094
noncoding	105	G105T	G	T	2	2	AY.20	0.000078
noncoding	105	G105T	G	T	2	2	AY.39.1	0.000079
noncoding	105	G105T	G	T	2	2	AY.4.2	0.000043
noncoding	105	G105T	G	T	2	2	AY.46	0.000208
noncoding	105	G105T	G	T	2	2	AY.52	0.001629
noncoding	105	G105T	G	T	2	2	AY.53	0.000575
noncoding	105	G105T	G	T	2	2	AY.6	0.000082
noncoding	105	G105T	G	T	2	2	AY.61	0.00021
noncoding	105	G105T	G	T	2	2	AY.62	0.000871
noncoding	105	G105T	G	T	2	2	B	0.000256
noncoding	105	G105T	G	T	2	2	B.1.1.222	0.000408
noncoding	105	G105T	G	T	2	2	B.1.1.311	0.000716
noncoding	105	G105T	G	T	2	2	B.1.1.50	0.001358
noncoding	105	G105T	G	T	2	2	B.1.1.54	0.006042
noncoding	105	G105T	G	T	2	2	B.1.219	0.018868
noncoding	105	G105T	G	T	2	2	B.1.240	0.000431
noncoding	105	G105T	G	T	2	2	B.1.36.24	0.012346
noncoding	105	G105T	G	T	2	2	B.1.391	0.002255
noncoding	105	G105T	G	T	2	2	B.1.408	0.00738
noncoding	105	G105T	G	T	2	2	B.1.459	0.008163
noncoding	105	G105T	G	T	2	2	B.1.596	0.000174
noncoding	105	G105T	G	T	2	2	B.1.627	0.00404
noncoding	105	G105T	G	T	2	2	B.1.637	0.000146
noncoding	105	G105T	G	T	2	2	P.1.15	0.000465
noncoding	105	G105T	G	T	2	2	Q.8	0.00033
noncoding	105	G105T	G	T	1	1	AD.2	0.000219
noncoding	105	G105T	G	T	1	1	AL.1	0.012987
noncoding	105	G105T	G	T	1	1	AU.2	0.002421
noncoding	105	G105T	G	T	1	1	AY.106	0.000335
noncoding	105	G105T	G	T	1	1	AY.12	0.000316
noncoding	105	G105T	G	T	1	1	AY.120	0.000037
noncoding	105	G105T	G	T	1	1	AY.120.1	0.000321
noncoding	105	G105T	G	T	1	1	AY.120.2	0.001285
noncoding	105	G105T	G	T	1	1	AY.121	0.000135
noncoding	105	G105T	G	T	1	1	AY.34	0.000097
noncoding	105	G105T	G	T	1	1	AY.36	0.000148
noncoding	105	G105T	G	T	1	1	AY.4.2.1	0.000149
noncoding	105	G105T	G	T	1	1	AY.4.5	0.000107
noncoding	105	G105T	G	T	1	1	AY.42	0.00004
noncoding	105	G105T	G	T	1	1	AY.58	0.000907
noncoding	105	G105T	G	T	1	1	AY.59	0.00053
noncoding	105	G105T	G	T	1	1	AY.7	0.000196
noncoding	105	G105T	G	T	1	1	AY.75.1	0.00018
noncoding	105	G105T	G	T	1	1	AY.92	0.000287
noncoding	105	G105T	G	T	1	1	AY.99.2	0.000092
noncoding	105	G105T	G	T	1	1	B.1.1.10	0.001115
noncoding	105	G105T	G	T	1	1	B.1.1.198	0.001468
noncoding	105	G105T	G	T	1	1	B.1.1.243	0.004082
noncoding	105	G105T	G	T	1	1	B.1.1.291	0.000742
noncoding	105	G105T	G	T	1	1	B.1.1.329	0.003846
noncoding	105	G105T	G	T	1	1	B.1.1.420	0.001006
noncoding	105	G105T	G	T	1	1	B.1.1.453	0.008475
noncoding	105	G105T	G	T	1	1	B.1.1.55	0.012987
noncoding	105	G105T	G	T	1	1	B.1.147	0.000756
noncoding	105	G105T	G	T	1	1	B.1.160.24	0.004425
noncoding	105	G105T	G	T	1	1	B.1.177.12	0.000152
noncoding	105	G105T	G	T	1	1	B.1.177.18	0.00116
noncoding	105	G105T	G	T	1	1	B.1.177.21	0.000076
noncoding	105	G105T	G	T	1	1	B.1.177.4	0.000211
noncoding	105	G105T	G	T	1	1	B.1.177.52	0.001757
noncoding	105	G105T	G	T	1	1	B.1.177.7	0.000165
noncoding	105	G105T	G	T	1	1	B.1.177.79	0.002342
noncoding	105	G105T	G	T	1	1	B.1.221	0.000071
noncoding	105	G105T	G	T	1	1	B.1.234	0.000132
noncoding	105	G105T	G	T	1	1	B.1.235	0.002519
noncoding	105	G105T	G	T	1	1	B.1.239	0.001221
noncoding	105	G105T	G	T	1	1	B.1.260	0.003344
noncoding	105	G105T	G	T	1	1	B.1.351.3	0.000876
noncoding	105	G105T	G	T	1	1	B.1.36.22	0.001208
noncoding	105	G105T	G	T	1	1	B.1.36.25	0.002208
noncoding	105	G105T	G	T	1	1	B.1.36.36	0.000602
noncoding	105	G105T	G	T	1	1	B.1.360	0.012658
noncoding	105	G105T	G	T	1	1	B.1.371	0.001122
noncoding	105	G105T	G	T	1	1	B.1.385	0.010638
noncoding	105	G105T	G	T	1	1	B.1.390	0.010638
noncoding	105	G105T	G	T	1	1	B.1.533	0.009615
noncoding	105	G105T	G	T	1	1	B.1.544	0.006024
noncoding	105	G105T	G	T	1	1	B.1.589	0.007576
noncoding	105	G105T	G	T	1	1	B.1.621	0.000089
noncoding	105	G105T	G	T	1	1	B.1.621.1	0.000506
noncoding	105	G105T	G	T	1	1	B.23	0.002924
noncoding	105	G105T	G	T	1	1	B.6.8	0.008264
noncoding	105	G105T	G	T	1	1	B.61	0.005747
noncoding	105	G105T	G	T	1	1	P.1.10	0.000269
noncoding	105	G105T	G	T	1	1	P.1.12	0.000484
noncoding	105	G105T	G	T	1	1	P.1.7	0.000319
noncoding	105	G105T	G	T	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.