CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29838T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29838C29838TnoncodingCT22532253129838-29838

Details of the mutation C29838T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29838C29838TCT22532253All0.000431
noncoding29838C29838TCT635635B.1.1.3330.683531
noncoding29838C29838TCT253253B.1.1.70.000226
noncoding29838C29838TCT168168B.1.1770.002212
noncoding29838C29838TCT123123AY.1030.000764
noncoding29838C29838TCT8989B.10.000815
noncoding29838C29838TCT8686B.1.617.20.000324
noncoding29838C29838TCT7878B.1.20.000687
noncoding29838C29838TCT7070P.10.001103
noncoding29838C29838TCT6969AY.40.000107
noncoding29838C29838TCT6464AY.440.00039
noncoding29838C29838TCT5454AY.580.049002
noncoding29838C29838TCT4444AY.430.000195
noncoding29838C29838TCT4040AY.250.000241
noncoding29838C29838TCT2323B.1.10.000417
noncoding29838C29838TCT1919B.1.360.002772
noncoding29838C29838TCT1313B.1.36.290.006725
noncoding29838C29838TCT1313B.1.5260.000306
noncoding29838C29838TCT1212AY.470.000373
noncoding29838C29838TCT1111AY.1050.007074
noncoding29838C29838TCT1111AY.30.000109
noncoding29838C29838TCT1111AY.390.000272
noncoding29838C29838TCT1111AY.50.000227
noncoding29838C29838TCT99AY.1020.000239
noncoding29838C29838TCT99AY.640.005357
noncoding29838C29838TCT99B.1.1.5190.000357
noncoding29838C29838TCT99B.1.1600.000281
noncoding29838C29838TCT99B.1.3510.000268
noncoding29838C29838TCT99B.1.4290.000212
noncoding29838C29838TCT88AY.750.000448
noncoding29838C29838TCT88B.1.617.10.001032
noncoding29838C29838TCT88B.1.6370.000585
noncoding29838C29838TCT77AY.1000.000322
noncoding29838C29838TCT77B.1.1.280.002179
noncoding29838C29838TCT66AY.1180.000376
noncoding29838C29838TCT66AY.200.000233
noncoding29838C29838TCT66AY.90.000406
noncoding29838C29838TCT66B.1.1100.027149
noncoding29838C29838TCT66B.1.30.015707
noncoding29838C29838TCT55AY.540.000477
noncoding29838C29838TCT55B.1.1.1210.012136
noncoding29838C29838TCT55B.1.2430.000348
noncoding29838C29838TCT55B.1.2580.000333
noncoding29838C29838TCT55B.1.4690.018051
noncoding29838C29838TCT55B.1.5510.006452
noncoding29838C29838TCT55B.1.5600.023148
noncoding29838C29838TCT44AY.1200.000149
noncoding29838C29838TCT44B.1.1.370.000771
noncoding29838C29838TCT44B.1.177.530.009569
noncoding29838C29838TCT44B.1.4270.000202
noncoding29838C29838TCT44C.350.003096
noncoding29838C29838TCT44P.1.170.000647
noncoding29838C29838TCT33AY.1170.000254
noncoding29838C29838TCT33AY.1190.000106
noncoding29838C29838TCT33AY.230.000209
noncoding29838C29838TCT33AY.260.000085
noncoding29838C29838TCT33AY.330.0002
noncoding29838C29838TCT33AY.75.10.000541
noncoding29838C29838TCT33B.1.1.2160.002671
noncoding29838C29838TCT33B.1.1.3060.001315
noncoding29838C29838TCT33B.1.1.3510.00838
noncoding29838C29838TCT33B.1.258.170.000312
noncoding29838C29838TCT33B.1.2930.0375
noncoding29838C29838TCT33B.1.36.170.001482
noncoding29838C29838TCT33D.20.000225
noncoding29838C29838TCT22A.10.000564
noncoding29838C29838TCT22AY.1080.002205
noncoding29838C29838TCT22AY.3.10.000171
noncoding29838C29838TCT22AY.420.00008
noncoding29838C29838TCT22AY.450.000243
noncoding29838C29838TCT22AY.590.001059
noncoding29838C29838TCT22AY.610.00021
noncoding29838C29838TCT22AY.730.001331
noncoding29838C29838TCT22AY.810.003984
noncoding29838C29838TCT22AY.980.000158
noncoding29838C29838TCT22B.1.1.10.000653
noncoding29838C29838TCT22B.1.1.2140.000111
noncoding29838C29838TCT22B.1.1.2220.000408
noncoding29838C29838TCT22B.1.1.2340.024096
noncoding29838C29838TCT22B.1.1.2410.004141
noncoding29838C29838TCT22B.1.1.250.001137
noncoding29838C29838TCT22B.1.1.2650.006309
noncoding29838C29838TCT22B.1.1.330.000842
noncoding29838C29838TCT22B.1.1.3540.008772
noncoding29838C29838TCT22B.1.1.390.001019
noncoding29838C29838TCT22B.1.1.4160.00181
noncoding29838C29838TCT22B.1.177.750.002081
noncoding29838C29838TCT22B.1.2140.007326
noncoding29838C29838TCT22B.1.36.220.002415
noncoding29838C29838TCT22B.1.4260.002018
noncoding29838C29838TCT22B.1.4700.002809
noncoding29838C29838TCT22B.1.5380.016129
noncoding29838C29838TCT22B.1.5750.000607
noncoding29838C29838TCT22B.1.5950.000522
noncoding29838C29838TCT22B.1.5960.000174
noncoding29838C29838TCT22B.1.6090.000959
noncoding29838C29838TCT22B.6.60.001778
noncoding29838C29838TCT22P.1.140.000096
noncoding29838C29838TCT22P.20.000373
noncoding29838C29838TCT22Q.30.00029
noncoding29838C29838TCT11A.23.10.000704
noncoding29838C29838TCT11A.290.005319
noncoding29838C29838TCT11AD.20.000219
noncoding29838C29838TCT11AY.1010.00049
noncoding29838C29838TCT11AY.1060.000335
noncoding29838C29838TCT11AY.1130.000142
noncoding29838C29838TCT11AY.116.10.000311
noncoding29838C29838TCT11AY.350.000233
noncoding29838C29838TCT11AY.39.10.00004
noncoding29838C29838TCT11AY.4.20.000022
noncoding29838C29838TCT11AY.4.2.10.000149
noncoding29838C29838TCT11AY.46.60.000072
noncoding29838C29838TCT11AY.60.000041
noncoding29838C29838TCT11AY.670.000464
noncoding29838C29838TCT11AY.740.000116
noncoding29838C29838TCT11AY.840.000437
noncoding29838C29838TCT11AY.860.00083
noncoding29838C29838TCT11AY.9.10.000084
noncoding29838C29838TCT11AY.9.20.000037
noncoding29838C29838TCT11B0.000128
noncoding29838C29838TCT11B.1.1.1860.003436
noncoding29838C29838TCT11B.1.1.2200.001859
noncoding29838C29838TCT11B.1.1.2840.000107
noncoding29838C29838TCT11B.1.1.2970.002237
noncoding29838C29838TCT11B.1.1.630.000386
noncoding29838C29838TCT11B.1.1.700.000341
noncoding29838C29838TCT11B.1.160.160.000929
noncoding29838C29838TCT11B.1.177.210.000076
noncoding29838C29838TCT11B.1.177.330.001645
noncoding29838C29838TCT11B.1.177.40.000211
noncoding29838C29838TCT11B.1.177.410.0025
noncoding29838C29838TCT11B.1.177.430.001477
noncoding29838C29838TCT11B.1.177.570.000281
noncoding29838C29838TCT11B.1.177.600.000218
noncoding29838C29838TCT11B.1.177.630.002703
noncoding29838C29838TCT11B.1.2060.000816
noncoding29838C29838TCT11B.1.2100.002132
noncoding29838C29838TCT11B.1.2210.000071
noncoding29838C29838TCT11B.1.221.20.004016
noncoding29838C29838TCT11B.1.2220.001692
noncoding29838C29838TCT11B.1.2410.000812
noncoding29838C29838TCT11B.1.3200.001245
noncoding29838C29838TCT11B.1.3400.004292
noncoding29838C29838TCT11B.1.36.100.004785
noncoding29838C29838TCT11B.1.3610.001289
noncoding29838C29838TCT11B.1.3960.000706
noncoding29838C29838TCT11B.1.4000.000429
noncoding29838C29838TCT11B.1.4040.001302
noncoding29838C29838TCT11B.1.466.20.000391
noncoding29838C29838TCT11B.1.4710.002732
noncoding29838C29838TCT11B.1.5050.004386
noncoding29838C29838TCT11B.1.5090.000866
noncoding29838C29838TCT11B.1.5250.000113
noncoding29838C29838TCT11B.1.5460.003704
noncoding29838C29838TCT11B.1.564.10.001577
noncoding29838C29838TCT11B.1.617.30.002985
noncoding29838C29838TCT11B.1.6180.004032
noncoding29838C29838TCT11B.1.6210.000089
noncoding29838C29838TCT11C.36.30.000567
noncoding29838C29838TCT11C.370.000116
noncoding29838C29838TCT11C.380.008065
noncoding29838C29838TCT11N.50.001767
noncoding29838C29838TCT11P.1.130.000898
noncoding29838C29838TCT11P.1.20.001156
noncoding29838C29838TCT11P.1.70.000319
noncoding29838C29838TCT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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