CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29784 | C29784T | noncoding | C | T | 6035 | 6035 | 1 | 29784-29784 |
Details of the mutation C29784T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29784 | C29784T | C | T | 6035 | 6035 | All | 0.001154 |
noncoding | 29784 | C29784T | C | T | 1149 | 1149 | B.1.1.7 | 0.001029 |
noncoding | 29784 | C29784T | C | T | 1041 | 1041 | B.1.1.291 | 0.772829 |
noncoding | 29784 | C29784T | C | T | 542 | 542 | B.1 | 0.004964 |
noncoding | 29784 | C29784T | C | T | 439 | 439 | B.1.127 | 0.964835 |
noncoding | 29784 | C29784T | C | T | 345 | 345 | B.1.2 | 0.003038 |
noncoding | 29784 | C29784T | C | T | 261 | 261 | B.1.617.2 | 0.000983 |
noncoding | 29784 | C29784T | C | T | 245 | 245 | B.1.1.263 | 0.38162 |
noncoding | 29784 | C29784T | C | T | 176 | 176 | B.1.1 | 0.003193 |
noncoding | 29784 | C29784T | C | T | 147 | 147 | B.1.427 | 0.007423 |
noncoding | 29784 | C29784T | C | T | 109 | 109 | AY.4 | 0.00017 |
noncoding | 29784 | C29784T | C | T | 100 | 100 | B.1.351 | 0.002973 |
noncoding | 29784 | C29784T | C | T | 86 | 86 | B.1.1.214 | 0.004769 |
noncoding | 29784 | C29784T | C | T | 82 | 82 | AY.43 | 0.000363 |
noncoding | 29784 | C29784T | C | T | 75 | 75 | B.1.240 | 0.016167 |
noncoding | 29784 | C29784T | C | T | 71 | 71 | AY.102 | 0.001882 |
noncoding | 29784 | C29784T | C | T | 70 | 70 | B.1.177 | 0.000922 |
noncoding | 29784 | C29784T | C | T | 67 | 67 | B.1.637 | 0.004896 |
noncoding | 29784 | C29784T | C | T | 64 | 64 | AY.44 | 0.00039 |
noncoding | 29784 | C29784T | C | T | 63 | 63 | P.1 | 0.000993 |
noncoding | 29784 | C29784T | C | T | 53 | 53 | AY.73 | 0.035263 |
noncoding | 29784 | C29784T | C | T | 46 | 46 | AY.25 | 0.000277 |
noncoding | 29784 | C29784T | C | T | 45 | 45 | AY.54 | 0.004291 |
noncoding | 29784 | C29784T | C | T | 37 | 37 | B.1.1.290 | 0.672727 |
noncoding | 29784 | C29784T | C | T | 32 | 32 | B.1.416 | 0.040609 |
noncoding | 29784 | C29784T | C | T | 29 | 29 | B.1.1.348 | 0.023089 |
noncoding | 29784 | C29784T | C | T | 26 | 26 | AA.8 | 0.577778 |
noncoding | 29784 | C29784T | C | T | 23 | 23 | AY.103 | 0.000143 |
noncoding | 29784 | C29784T | C | T | 23 | 23 | B.1.1.70 | 0.007844 |
noncoding | 29784 | C29784T | C | T | 22 | 22 | B.1.258.11 | 0.00872 |
noncoding | 29784 | C29784T | C | T | 22 | 22 | B.1.429 | 0.000518 |
noncoding | 29784 | C29784T | C | T | 21 | 21 | B.1.160 | 0.000655 |
noncoding | 29784 | C29784T | C | T | 19 | 19 | C.37 | 0.002205 |
noncoding | 29784 | C29784T | C | T | 17 | 17 | B.1.1.222 | 0.003468 |
noncoding | 29784 | C29784T | C | T | 17 | 17 | B.1.621 | 0.001505 |
noncoding | 29784 | C29784T | C | T | 14 | 14 | B.1.1.284 | 0.001504 |
noncoding | 29784 | C29784T | C | T | 14 | 14 | B.1.36 | 0.002043 |
noncoding | 29784 | C29784T | C | T | 13 | 13 | AY.39 | 0.000321 |
noncoding | 29784 | C29784T | C | T | 13 | 13 | B.1.1.519 | 0.000516 |
noncoding | 29784 | C29784T | C | T | 13 | 13 | B.1.177.44 | 0.006746 |
noncoding | 29784 | C29784T | C | T | 13 | 13 | B.1.36.17 | 0.006423 |
noncoding | 29784 | C29784T | C | T | 13 | 13 | B.1.526 | 0.000306 |
noncoding | 29784 | C29784T | C | T | 11 | 11 | B.1.1.33 | 0.00463 |
noncoding | 29784 | C29784T | C | T | 11 | 11 | B.1.596 | 0.000959 |
noncoding | 29784 | C29784T | C | T | 10 | 10 | AY.20 | 0.000389 |
noncoding | 29784 | C29784T | C | T | 9 | 9 | AY.26 | 0.000255 |
noncoding | 29784 | C29784T | C | T | 9 | 9 | AY.3 | 0.00009 |
noncoding | 29784 | C29784T | C | T | 9 | 9 | AY.5 | 0.000186 |
noncoding | 29784 | C29784T | C | T | 9 | 9 | P.2 | 0.00168 |
noncoding | 29784 | C29784T | C | T | 8 | 8 | AY.47 | 0.000249 |
noncoding | 29784 | C29784T | C | T | 8 | 8 | B.1.1.420 | 0.008048 |
noncoding | 29784 | C29784T | C | T | 7 | 7 | B.1.1.216 | 0.006233 |
noncoding | 29784 | C29784T | C | T | 7 | 7 | B.1.177.81 | 0.001325 |
noncoding | 29784 | C29784T | C | T | 7 | 7 | B.1.177.82 | 0.003341 |
noncoding | 29784 | C29784T | C | T | 7 | 7 | B.1.258 | 0.000466 |
noncoding | 29784 | C29784T | C | T | 7 | 7 | P.1.14 | 0.000335 |
noncoding | 29784 | C29784T | C | T | 6 | 6 | AY.33 | 0.000401 |
noncoding | 29784 | C29784T | C | T | 6 | 6 | P.1.7 | 0.001916 |
noncoding | 29784 | C29784T | C | T | 5 | 5 | AY.42 | 0.000201 |
noncoding | 29784 | C29784T | C | T | 5 | 5 | AY.61 | 0.000524 |
noncoding | 29784 | C29784T | C | T | 5 | 5 | AY.75.1 | 0.000902 |
noncoding | 29784 | C29784T | C | T | 5 | 5 | AY.9.2 | 0.000184 |
noncoding | 29784 | C29784T | C | T | 5 | 5 | B.1.36.29 | 0.002587 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | A.2.5 | 0.001996 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | AD.2 | 0.000876 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | AY.118 | 0.000251 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | AY.14 | 0.000352 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | AY.23 | 0.000279 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | B.1.1.318 | 0.001207 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | B.1.243 | 0.000278 |
noncoding | 29784 | C29784T | C | T | 4 | 4 | B.1.470 | 0.005618 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | A | 0.001161 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | AY.46 | 0.000312 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | AY.6 | 0.000123 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.1.428 | 0.028302 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.1.52 | 0.036585 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.169 | 0.044776 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.234 | 0.000396 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.36.8 | 0.003 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.503 | 0.007463 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.517 | 0.001281 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.1.595.1 | 0.017544 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | B.40 | 0.001093 |
noncoding | 29784 | C29784T | C | T | 3 | 3 | C.16 | 0.003181 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.120 | 0.000074 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.34.1 | 0.00102 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.35 | 0.000466 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.5.4 | 0.000553 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.65 | 0.001066 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | AY.68 | 0.000547 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.1 | 0.000653 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.207 | 0.002364 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.312 | 0.003824 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.373 | 0.047619 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.448 | 0.004065 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.1.63 | 0.000772 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.104 | 0.00738 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.177.17 | 0.001642 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.177.4 | 0.000422 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.177.60 | 0.000437 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.177.69 | 0.002967 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.351.2 | 0.000605 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.369 | 0.00057 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.409 | 0.001563 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.466.2 | 0.000782 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.474 | 0.003802 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.499 | 0.002101 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.1.621.1 | 0.001012 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | B.57 | 0.030303 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | C.36.2 | 0.068966 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | D.2 | 0.00015 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | P.1.10 | 0.000539 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | P.1.12 | 0.000968 |
noncoding | 29784 | C29784T | C | T | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | A.29 | 0.005319 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.16.1 | 0.00047 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.2 | 0.000356 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.97 | 0.001701 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AY.99.1 | 0.001553 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | AZ.1 | 0.000867 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B | 0.000128 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.117 | 0.009709 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.122 | 0.045455 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.268 | 0.014925 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.304 | 0.002809 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.335 | 0.012987 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.461 | 0.012048 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.16 | 0.000664 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.199 | 0.004132 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.221.3 | 0.000833 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.289 | 0.00266 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.389 | 0.001002 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.422 | 0.000812 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.441 | 0.009615 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.606 | 0.006024 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.8 | 0.001972 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.1.9.5 | 0.005682 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.26 | 0.014706 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.28 | 0.003279 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.4.2 | 0.066667 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | B.4.7 | 0.010101 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | C.14 | 0.004329 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | C.40 | 0.027778 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | N.9 | 0.005952 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | P.1.16 | 0.000374 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | P.1.6 | 0.001946 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | Q.4 | 0.000455 |
noncoding | 29784 | C29784T | C | T | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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