CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29784T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29784C29784TnoncodingCT60356035129784-29784

Details of the mutation C29784T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29784C29784TCT60356035All0.001154
noncoding29784C29784TCT11491149B.1.1.70.001029
noncoding29784C29784TCT10411041B.1.1.2910.772829
noncoding29784C29784TCT542542B.10.004964
noncoding29784C29784TCT439439B.1.1270.964835
noncoding29784C29784TCT345345B.1.20.003038
noncoding29784C29784TCT261261B.1.617.20.000983
noncoding29784C29784TCT245245B.1.1.2630.38162
noncoding29784C29784TCT176176B.1.10.003193
noncoding29784C29784TCT147147B.1.4270.007423
noncoding29784C29784TCT109109AY.40.00017
noncoding29784C29784TCT100100B.1.3510.002973
noncoding29784C29784TCT8686B.1.1.2140.004769
noncoding29784C29784TCT8282AY.430.000363
noncoding29784C29784TCT7575B.1.2400.016167
noncoding29784C29784TCT7171AY.1020.001882
noncoding29784C29784TCT7070B.1.1770.000922
noncoding29784C29784TCT6767B.1.6370.004896
noncoding29784C29784TCT6464AY.440.00039
noncoding29784C29784TCT6363P.10.000993
noncoding29784C29784TCT5353AY.730.035263
noncoding29784C29784TCT4646AY.250.000277
noncoding29784C29784TCT4545AY.540.004291
noncoding29784C29784TCT3737B.1.1.2900.672727
noncoding29784C29784TCT3232B.1.4160.040609
noncoding29784C29784TCT2929B.1.1.3480.023089
noncoding29784C29784TCT2626AA.80.577778
noncoding29784C29784TCT2323AY.1030.000143
noncoding29784C29784TCT2323B.1.1.700.007844
noncoding29784C29784TCT2222B.1.258.110.00872
noncoding29784C29784TCT2222B.1.4290.000518
noncoding29784C29784TCT2121B.1.1600.000655
noncoding29784C29784TCT1919C.370.002205
noncoding29784C29784TCT1717B.1.1.2220.003468
noncoding29784C29784TCT1717B.1.6210.001505
noncoding29784C29784TCT1414B.1.1.2840.001504
noncoding29784C29784TCT1414B.1.360.002043
noncoding29784C29784TCT1313AY.390.000321
noncoding29784C29784TCT1313B.1.1.5190.000516
noncoding29784C29784TCT1313B.1.177.440.006746
noncoding29784C29784TCT1313B.1.36.170.006423
noncoding29784C29784TCT1313B.1.5260.000306
noncoding29784C29784TCT1111B.1.1.330.00463
noncoding29784C29784TCT1111B.1.5960.000959
noncoding29784C29784TCT1010AY.200.000389
noncoding29784C29784TCT99AY.260.000255
noncoding29784C29784TCT99AY.30.00009
noncoding29784C29784TCT99AY.50.000186
noncoding29784C29784TCT99P.20.00168
noncoding29784C29784TCT88AY.470.000249
noncoding29784C29784TCT88B.1.1.4200.008048
noncoding29784C29784TCT77B.1.1.2160.006233
noncoding29784C29784TCT77B.1.177.810.001325
noncoding29784C29784TCT77B.1.177.820.003341
noncoding29784C29784TCT77B.1.2580.000466
noncoding29784C29784TCT77P.1.140.000335
noncoding29784C29784TCT66AY.330.000401
noncoding29784C29784TCT66P.1.70.001916
noncoding29784C29784TCT55AY.420.000201
noncoding29784C29784TCT55AY.610.000524
noncoding29784C29784TCT55AY.75.10.000902
noncoding29784C29784TCT55AY.9.20.000184
noncoding29784C29784TCT55B.1.36.290.002587
noncoding29784C29784TCT44A.2.50.001996
noncoding29784C29784TCT44AD.20.000876
noncoding29784C29784TCT44AY.1180.000251
noncoding29784C29784TCT44AY.140.000352
noncoding29784C29784TCT44AY.230.000279
noncoding29784C29784TCT44B.1.1.3180.001207
noncoding29784C29784TCT44B.1.2430.000278
noncoding29784C29784TCT44B.1.4700.005618
noncoding29784C29784TCT33A0.001161
noncoding29784C29784TCT33AY.460.000312
noncoding29784C29784TCT33AY.60.000123
noncoding29784C29784TCT33B.1.1.280.000934
noncoding29784C29784TCT33B.1.1.4280.028302
noncoding29784C29784TCT33B.1.1.520.036585
noncoding29784C29784TCT33B.1.1690.044776
noncoding29784C29784TCT33B.1.2340.000396
noncoding29784C29784TCT33B.1.36.80.003
noncoding29784C29784TCT33B.1.5030.007463
noncoding29784C29784TCT33B.1.5170.001281
noncoding29784C29784TCT33B.1.595.10.017544
noncoding29784C29784TCT33B.400.001093
noncoding29784C29784TCT33C.160.003181
noncoding29784C29784TCT22AY.1200.000074
noncoding29784C29784TCT22AY.190.002281
noncoding29784C29784TCT22AY.34.10.00102
noncoding29784C29784TCT22AY.350.000466
noncoding29784C29784TCT22AY.450.000243
noncoding29784C29784TCT22AY.46.60.000144
noncoding29784C29784TCT22AY.5.40.000553
noncoding29784C29784TCT22AY.650.001066
noncoding29784C29784TCT22AY.680.000547
noncoding29784C29784TCT22B.1.1.10.000653
noncoding29784C29784TCT22B.1.1.2070.002364
noncoding29784C29784TCT22B.1.1.3060.000877
noncoding29784C29784TCT22B.1.1.3120.003824
noncoding29784C29784TCT22B.1.1.3730.047619
noncoding29784C29784TCT22B.1.1.4480.004065
noncoding29784C29784TCT22B.1.1.500.001358
noncoding29784C29784TCT22B.1.1.630.000772
noncoding29784C29784TCT22B.1.1040.00738
noncoding29784C29784TCT22B.1.177.170.001642
noncoding29784C29784TCT22B.1.177.40.000422
noncoding29784C29784TCT22B.1.177.600.000437
noncoding29784C29784TCT22B.1.177.690.002967
noncoding29784C29784TCT22B.1.2210.000142
noncoding29784C29784TCT22B.1.3110.000549
noncoding29784C29784TCT22B.1.351.20.000605
noncoding29784C29784TCT22B.1.3690.00057
noncoding29784C29784TCT22B.1.4090.001563
noncoding29784C29784TCT22B.1.466.20.000782
noncoding29784C29784TCT22B.1.4740.003802
noncoding29784C29784TCT22B.1.4990.002101
noncoding29784C29784TCT22B.1.621.10.001012
noncoding29784C29784TCT22B.570.030303
noncoding29784C29784TCT22C.36.20.068966
noncoding29784C29784TCT22D.20.00015
noncoding29784C29784TCT22P.1.100.000539
noncoding29784C29784TCT22P.1.120.000968
noncoding29784C29784TCT22Q.10.000253
noncoding29784C29784TCT11A.10.000282
noncoding29784C29784TCT11A.290.005319
noncoding29784C29784TCT11AY.1130.000142
noncoding29784C29784TCT11AY.120.10.000321
noncoding29784C29784TCT11AY.16.10.00047
noncoding29784C29784TCT11AY.20.000356
noncoding29784C29784TCT11AY.23.10.000417
noncoding29784C29784TCT11AY.290.000016
noncoding29784C29784TCT11AY.3.10.000085
noncoding29784C29784TCT11AY.340.000097
noncoding29784C29784TCT11AY.370.000316
noncoding29784C29784TCT11AY.4.20.000022
noncoding29784C29784TCT11AY.400.000964
noncoding29784C29784TCT11AY.620.000436
noncoding29784C29784TCT11AY.690.000187
noncoding29784C29784TCT11AY.70.000196
noncoding29784C29784TCT11AY.90.000068
noncoding29784C29784TCT11AY.950.000761
noncoding29784C29784TCT11AY.970.001701
noncoding29784C29784TCT11AY.980.000079
noncoding29784C29784TCT11AY.98.10.000048
noncoding29784C29784TCT11AY.99.10.001553
noncoding29784C29784TCT11AZ.10.000867
noncoding29784C29784TCT11B0.000128
noncoding29784C29784TCT11B.1.1.1170.009709
noncoding29784C29784TCT11B.1.1.1220.045455
noncoding29784C29784TCT11B.1.1.1700.001247
noncoding29784C29784TCT11B.1.1.2680.014925
noncoding29784C29784TCT11B.1.1.2690.001353
noncoding29784C29784TCT11B.1.1.2770.000759
noncoding29784C29784TCT11B.1.1.3040.002809
noncoding29784C29784TCT11B.1.1.3350.012987
noncoding29784C29784TCT11B.1.1.370.000193
noncoding29784C29784TCT11B.1.1.3720.000689
noncoding29784C29784TCT11B.1.1.390.00051
noncoding29784C29784TCT11B.1.1.3980.003226
noncoding29784C29784TCT11B.1.1.4610.012048
noncoding29784C29784TCT11B.1.1.540.003021
noncoding29784C29784TCT11B.1.177.120.000152
noncoding29784C29784TCT11B.1.177.160.000664
noncoding29784C29784TCT11B.1.177.350.000691
noncoding29784C29784TCT11B.1.177.570.000281
noncoding29784C29784TCT11B.1.177.70.000165
noncoding29784C29784TCT11B.1.177.770.000726
noncoding29784C29784TCT11B.1.1990.004132
noncoding29784C29784TCT11B.1.2100.002132
noncoding29784C29784TCT11B.1.221.30.000833
noncoding29784C29784TCT11B.1.2890.00266
noncoding29784C29784TCT11B.1.3200.001245
noncoding29784C29784TCT11B.1.3240.001605
noncoding29784C29784TCT11B.1.3670.000792
noncoding29784C29784TCT11B.1.3890.001002
noncoding29784C29784TCT11B.1.4220.000812
noncoding29784C29784TCT11B.1.438.10.000107
noncoding29784C29784TCT11B.1.4410.009615
noncoding29784C29784TCT11B.1.564.10.001577
noncoding29784C29784TCT11B.1.5650.00081
noncoding29784C29784TCT11B.1.6060.006024
noncoding29784C29784TCT11B.1.6190.000871
noncoding29784C29784TCT11B.1.80.001972
noncoding29784C29784TCT11B.1.9.50.005682
noncoding29784C29784TCT11B.260.014706
noncoding29784C29784TCT11B.280.003279
noncoding29784C29784TCT11B.4.20.066667
noncoding29784C29784TCT11B.4.70.010101
noncoding29784C29784TCT11C.140.004329
noncoding29784C29784TCT11C.360.000911
noncoding29784C29784TCT11C.400.027778
noncoding29784C29784TCT11N.90.005952
noncoding29784C29784TCT11P.1.160.000374
noncoding29784C29784TCT11P.1.60.001946
noncoding29784C29784TCT11Q.30.000145
noncoding29784C29784TCT11Q.40.000455
noncoding29784C29784TCT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.