CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29754T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29754C29754TnoncodingCT1227212272129754-29754

Details of the mutation C29754T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29754C29754TCT1227212272All0.002347
noncoding29754C29754TCT47604760P.20.888391
noncoding29754C29754TCT20602060B.1.1.70.001844
noncoding29754C29754TCT791791B.1.3510.023514
noncoding29754C29754TCT504504B.1.177.730.285391
noncoding29754C29754TCT444444B.1.1.250.252416
noncoding29754C29754TCT422422B.1.20.003716
noncoding29754C29754TCT359359B.1.1.1700.447631
noncoding29754C29754TCT327327A.23.10.230282
noncoding29754C29754TCT219219B.1.1.5190.008697
noncoding29754C29754TCT194194B.10.001777
noncoding29754C29754TCT127127B.1.1770.001672
noncoding29754C29754TCT114114AY.40.000177
noncoding29754C29754TCT104104B.1.617.20.000392
noncoding29754C29754TCT101101B.1.10.001832
noncoding29754C29754TCT9595AY.1020.002519
noncoding29754C29754TCT7070B.1.5960.0061
noncoding29754C29754TCT6666C.370.00766
noncoding29754C29754TCT5959B.1.4290.001388
noncoding29754C29754TCT5959P.10.000929
noncoding29754C29754TCT5656B.1.1.280.017429
noncoding29754C29754TCT5353B.1.2210.003765
noncoding29754C29754TCT4747AY.430.000208
noncoding29754C29754TCT4646P.1.140.002199
noncoding29754C29754TCT4545R.10.00405
noncoding29754C29754TCT4444AY.330.002938
noncoding29754C29754TCT4242B.1.177.750.043704
noncoding29754C29754TCT3535AY.440.000213
noncoding29754C29754TCT3131B.1.1600.000967
noncoding29754C29754TCT3030AY.250.00018
noncoding29754C29754TCT2828AY.1030.000174
noncoding29754C29754TCT2828B.1.5260.000658
noncoding29754C29754TCT2525AY.30.000249
noncoding29754C29754TCT2424AY.1130.003417
noncoding29754C29754TCT2424B.1.6210.002124
noncoding29754C29754TCT2222P.1.120.010649
noncoding29754C29754TCT2121AY.980.001659
noncoding29754C29754TCT2020B.1.6370.001461
noncoding29754C29754TCT1919AY.50.000392
noncoding29754C29754TCT1919B.1.617.10.00245
noncoding29754C29754TCT1818B.1.2430.001253
noncoding29754C29754TCT1818B.1.2580.001198
noncoding29754C29754TCT1616B.1.36.10.018244
noncoding29754C29754TCT1616B.1.5880.014559
noncoding29754C29754TCT1515B.1.9.50.085227
noncoding29754C29754TCT1515D.20.001126
noncoding29754C29754TCT1414AY.200.000544
noncoding29754C29754TCT1313B.1.1.4320.016456
noncoding29754C29754TCT1313B.1.5610.005161
noncoding29754C29754TCT1212AY.46.40.001974
noncoding29754C29754TCT1111B.1.1.1530.012048
noncoding29754C29754TCT1010AY.1190.000353
noncoding29754C29754TCT1010AY.460.001041
noncoding29754C29754TCT1010AY.850.004272
noncoding29754C29754TCT99AY.450.001095
noncoding29754C29754TCT99AY.670.004178
noncoding29754C29754TCT99B.1.177.70.001484
noncoding29754C29754TCT99B.270.138462
noncoding29754C29754TCT88B.1.1.1890.012103
noncoding29754C29754TCT77AY.290.00011
noncoding29754C29754TCT77AY.390.000173
noncoding29754C29754TCT77B.1.1.2140.000388
noncoding29754C29754TCT77B.1.1.2220.001428
noncoding29754C29754TCT77B.1.1.3060.003069
noncoding29754C29754TCT77B.1.1.330.002946
noncoding29754C29754TCT77B.1.177.600.001529
noncoding29754C29754TCT77B.1.177.860.001284
noncoding29754C29754TCT77B.1.4270.000353
noncoding29754C29754TCT77B.1.438.30.538462
noncoding29754C29754TCT77B.1.5170.002989
noncoding29754C29754TCT77P.1.10.002224
noncoding29754C29754TCT66AY.1170.000507
noncoding29754C29754TCT66AY.750.000336
noncoding29754C29754TCT66B.1.177.160.003987
noncoding29754C29754TCT66B.1.3750.004918
noncoding29754C29754TCT55AY.1100.000563
noncoding29754C29754TCT55AY.260.000142
noncoding29754C29754TCT55AY.470.000156
noncoding29754C29754TCT55AY.740.000578
noncoding29754C29754TCT55AY.9.20.000184
noncoding29754C29754TCT55AZ.50.017544
noncoding29754C29754TCT55B.1.1.3180.001509
noncoding29754C29754TCT55B.1.1.630.001929
noncoding29754C29754TCT55B.1.36.290.002587
noncoding29754C29754TCT55P.1.170.000809
noncoding29754C29754TCT55Q.80.000825
noncoding29754C29754TCT44AY.1110.000733
noncoding29754C29754TCT44AY.1200.000149
noncoding29754C29754TCT44AY.4.20.000087
noncoding29754C29754TCT44AY.550.00367
noncoding29754C29754TCT44AY.570.002625
noncoding29754C29754TCT44AY.630.001547
noncoding29754C29754TCT44AY.650.002132
noncoding29754C29754TCT44B0.000511
noncoding29754C29754TCT44B.1.1.1570.003653
noncoding29754C29754TCT44B.1.1.2610.034483
noncoding29754C29754TCT44B.1.1.3970.009009
noncoding29754C29754TCT44B.1.1.80.014337
noncoding29754C29754TCT44B.1.177.560.00267
noncoding29754C29754TCT44B.1.177.810.000757
noncoding29754C29754TCT44B.1.2340.000528
noncoding29754C29754TCT44B.1.258.170.000416
noncoding29754C29754TCT44B.1.351.20.00121
noncoding29754C29754TCT44B.1.360.000584
noncoding29754C29754TCT44P.30.00638
noncoding29754C29754TCT44R.20.057971
noncoding29754C29754TCT33AY.130.000483
noncoding29754C29754TCT33AY.360.000445
noncoding29754C29754TCT33AY.480.001395
noncoding29754C29754TCT33AY.75.10.000541
noncoding29754C29754TCT33B.1.1.2200.005576
noncoding29754C29754TCT33B.1.1.370.000579
noncoding29754C29754TCT33B.1.1260.003827
noncoding29754C29754TCT33B.1.1610.051724
noncoding29754C29754TCT33B.1.177.320.004049
noncoding29754C29754TCT33B.1.177.540.001819
noncoding29754C29754TCT33B.1.2400.000647
noncoding29754C29754TCT33B.1.2410.002435
noncoding29754C29754TCT33B.1.2790.001541
noncoding29754C29754TCT33B.1.3560.005181
noncoding29754C29754TCT33B.1.36.170.001482
noncoding29754C29754TCT33B.1.3690.000856
noncoding29754C29754TCT33B.1.438.10.000322
noncoding29754C29754TCT33B.1.466.20.001174
noncoding29754C29754TCT33B.1.5380.024194
noncoding29754C29754TCT33B.1.5750.00091
noncoding29754C29754TCT33B.1.5950.000783
noncoding29754C29754TCT33B.1.621.10.001517
noncoding29754C29754TCT33P.1.160.001122
noncoding29754C29754TCT33P.60.009434
noncoding29754C29754TCT33Q.10.000379
noncoding29754C29754TCT22AW.10.006098
noncoding29754C29754TCT22AY.1050.001286
noncoding29754C29754TCT22AY.160.000759
noncoding29754C29754TCT22AY.190.002281
noncoding29754C29754TCT22AY.230.000139
noncoding29754C29754TCT22AY.240.000862
noncoding29754C29754TCT22AY.3.10.000171
noncoding29754C29754TCT22AY.300.000791
noncoding29754C29754TCT22AY.340.000194
noncoding29754C29754TCT22AY.530.000575
noncoding29754C29754TCT22AY.590.001059
noncoding29754C29754TCT22B.1.1.10.000653
noncoding29754C29754TCT22B.1.1.2160.001781
noncoding29754C29754TCT22B.1.1.2320.00363
noncoding29754C29754TCT22B.1.1.2840.000215
noncoding29754C29754TCT22B.1.1.4090.005666
noncoding29754C29754TCT22B.1.1.4660.017391
noncoding29754C29754TCT22B.1.1.700.000682
noncoding29754C29754TCT22B.1.177.40.000422
noncoding29754C29754TCT22B.1.177.870.001456
noncoding29754C29754TCT22B.1.2060.001631
noncoding29754C29754TCT22B.1.258.100.022727
noncoding29754C29754TCT22B.1.2980.004228
noncoding29754C29754TCT22B.1.3110.000549
noncoding29754C29754TCT22B.1.3400.008584
noncoding29754C29754TCT22B.1.4590.008163
noncoding29754C29754TCT22B.1.5320.012422
noncoding29754C29754TCT22B.1.5510.002581
noncoding29754C29754TCT22B.1.5820.000981
noncoding29754C29754TCT22B.1.6090.000959
noncoding29754C29754TCT22B.1.6340.006849
noncoding29754C29754TCT22B.400.000729
noncoding29754C29754TCT22C.140.008658
noncoding29754C29754TCT22C.36.30.001134
noncoding29754C29754TCT22Q.30.00029
noncoding29754C29754TCT11A0.000387
noncoding29754C29754TCT11A.10.000282
noncoding29754C29754TCT11A.2.40.003367
noncoding29754C29754TCT11A.2.50.000499
noncoding29754C29754TCT11A.280.002646
noncoding29754C29754TCT11A.50.001923
noncoding29754C29754TCT11AD.20.000219
noncoding29754C29754TCT11AF.10.037037
noncoding29754C29754TCT11AU.30.00211
noncoding29754C29754TCT11AY.10.000396
noncoding29754C29754TCT11AY.1000.000046
noncoding29754C29754TCT11AY.1080.001103
noncoding29754C29754TCT11AY.120.000316
noncoding29754C29754TCT11AY.120.10.000321
noncoding29754C29754TCT11AY.1210.000135
noncoding29754C29754TCT11AY.140.000088
noncoding29754C29754TCT11AY.220.002092
noncoding29754C29754TCT11AY.320.000532
noncoding29754C29754TCT11AY.39.10.00004
noncoding29754C29754TCT11AY.4.50.000107
noncoding29754C29754TCT11AY.420.00004
noncoding29754C29754TCT11AY.46.60.000072
noncoding29754C29754TCT11AY.500.000799
noncoding29754C29754TCT11AY.600.000938
noncoding29754C29754TCT11AY.610.000105
noncoding29754C29754TCT11AY.80.000606
noncoding29754C29754TCT11AY.820.001357
noncoding29754C29754TCT11AY.840.000437
noncoding29754C29754TCT11AY.910.00073
noncoding29754C29754TCT11AY.98.10.000048
noncoding29754C29754TCT11AY.99.20.000092
noncoding29754C29754TCT11B.1.1.100.001115
noncoding29754C29754TCT11B.1.1.2020.076923
noncoding29754C29754TCT11B.1.1.2280.003049
noncoding29754C29754TCT11B.1.1.2370.005405
noncoding29754C29754TCT11B.1.1.2690.001353
noncoding29754C29754TCT11B.1.1.270.00565
noncoding29754C29754TCT11B.1.1.2790.001121
noncoding29754C29754TCT11B.1.1.3010.001179
noncoding29754C29754TCT11B.1.1.3110.000358
noncoding29754C29754TCT11B.1.1.3160.000925
noncoding29754C29754TCT11B.1.1.3260.001761
noncoding29754C29754TCT11B.1.1.3630.005988
noncoding29754C29754TCT11B.1.1.3680.003086
noncoding29754C29754TCT11B.1.1.3720.000689
noncoding29754C29754TCT11B.1.1.390.00051
noncoding29754C29754TCT11B.1.1.4170.002703
noncoding29754C29754TCT11B.1.1.4340.000349
noncoding29754C29754TCT11B.1.1.440.00241
noncoding29754C29754TCT11B.1.1.4620.008621
noncoding29754C29754TCT11B.1.1.4860.001577
noncoding29754C29754TCT11B.1.1.500.000679
noncoding29754C29754TCT11B.1.1.510.001718
noncoding29754C29754TCT11B.1.1.540.003021
noncoding29754C29754TCT11B.1.1.710.006061
noncoding29754C29754TCT11B.1.1.890.006061
noncoding29754C29754TCT11B.1.1470.000756
noncoding29754C29754TCT11B.1.160.80.001289
noncoding29754C29754TCT11B.1.177.120.000152
noncoding29754C29754TCT11B.1.177.140.006098
noncoding29754C29754TCT11B.1.177.190.001431
noncoding29754C29754TCT11B.1.177.330.001645
noncoding29754C29754TCT11B.1.177.450.000381
noncoding29754C29754TCT11B.1.177.460.000918
noncoding29754C29754TCT11B.1.177.530.002392
noncoding29754C29754TCT11B.1.177.620.001192
noncoding29754C29754TCT11B.1.177.650.000665
noncoding29754C29754TCT11B.1.177.740.015152
noncoding29754C29754TCT11B.1.177.780.009709
noncoding29754C29754TCT11B.1.177.820.000477
noncoding29754C29754TCT11B.1.177.850.005435
noncoding29754C29754TCT11B.1.177.90.001332
noncoding29754C29754TCT11B.1.230.006061
noncoding29754C29754TCT11B.1.2360.002053
noncoding29754C29754TCT11B.1.258.240.010753
noncoding29754C29754TCT11B.1.2650.001271
noncoding29754C29754TCT11B.1.3290.000608
noncoding29754C29754TCT11B.1.3500.002933
noncoding29754C29754TCT11B.1.36.100.004785
noncoding29754C29754TCT11B.1.36.180.00042
noncoding29754C29754TCT11B.1.36.190.009259
noncoding29754C29754TCT11B.1.36.380.001642
noncoding29754C29754TCT11B.1.36.80.001
noncoding29754C29754TCT11B.1.3910.001127
noncoding29754C29754TCT11B.1.3960.000706
noncoding29754C29754TCT11B.1.4080.00369
noncoding29754C29754TCT11B.1.4130.004255
noncoding29754C29754TCT11B.1.4380.006536
noncoding29754C29754TCT11B.1.4500.011364
noncoding29754C29754TCT11B.1.4700.001404
noncoding29754C29754TCT11B.1.4730.019231
noncoding29754C29754TCT11B.1.4990.00105
noncoding29754C29754TCT11B.1.5210.004975
noncoding29754C29754TCT11B.1.5250.000113
noncoding29754C29754TCT11B.1.5420.03125
noncoding29754C29754TCT11B.1.5760.000907
noncoding29754C29754TCT11B.1.5900.004545
noncoding29754C29754TCT11B.1.5930.01087
noncoding29754C29754TCT11B.1.6000.005848
noncoding29754C29754TCT11B.1.6050.005952
noncoding29754C29754TCT11B.1.6250.002353
noncoding29754C29754TCT11B.1.6270.00202
noncoding29754C29754TCT11B.1.6280.000352
noncoding29754C29754TCT11B.1.810.021277
noncoding29754C29754TCT11B.30.000831
noncoding29754C29754TCT11B.380.02381
noncoding29754C29754TCT11B.60.00091
noncoding29754C29754TCT11C.1.20.004255
noncoding29754C29754TCT11C.350.000774
noncoding29754C29754TCT11P.1.150.000232
noncoding29754C29754TCT11P.1.20.001156
noncoding29754C29754TCT11P.1.40.000977
noncoding29754C29754TCT11P.1.70.000319
noncoding29754C29754TCT11P.1.90.004808
noncoding29754C29754TCT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.