CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29750T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29750C29750TnoncodingCT1877518775129750-29750

Details of the mutation C29750T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29750C29750TCT1877518775All0.003591
noncoding29750C29750TCT33363336AY.30.033181
noncoding29750C29750TCT32263226B.1.1.70.002888
noncoding29750C29750TCT16621662AY.40.002587
noncoding29750C29750TCT13981398AY.50.028868
noncoding29750C29750TCT900900AY.430.003987
noncoding29750C29750TCT683683B.1.617.20.002572
noncoding29750C29750TCT507507B.1.1.1980.744493
noncoding29750C29750TCT427427AY.440.002599
noncoding29750C29750TCT361361AY.690.067388
noncoding29750C29750TCT352352AY.1030.002186
noncoding29750C29750TCT330330AY.250.001985
noncoding29750C29750TCT313313AY.260.008861
noncoding29750C29750TCT255255P.10.004017
noncoding29750C29750TCT225225B.1.1.2270.978261
noncoding29750C29750TCT204204C.370.023677
noncoding29750C29750TCT201201B.10.001841
noncoding29750C29750TCT172172B.1.10.00312
noncoding29750C29750TCT147147AY.1130.020931
noncoding29750C29750TCT146146AY.99.20.013455
noncoding29750C29750TCT137137B.1.20.001206
noncoding29750C29750TCT136136AY.1200.005056
noncoding29750C29750TCT132132B.1.4290.003106
noncoding29750C29750TCT117117B.1.1770.001541
noncoding29750C29750TCT109109B.1.1.3170.044874
noncoding29750C29750TCT104104AY.1020.002757
noncoding29750C29750TCT102102AY.20.036325
noncoding29750C29750TCT9999AY.4.20.002147
noncoding29750C29750TCT9494AY.390.002323
noncoding29750C29750TCT9494P.1.70.030013
noncoding29750C29750TCT9292B.1.6030.978723
noncoding29750C29750TCT8484AY.420.003379
noncoding29750C29750TCT7373AY.200.002837
noncoding29750C29750TCT7373AY.5.30.024629
noncoding29750C29750TCT6262AY.9.20.002277
noncoding29750C29750TCT5757D.20.004277
noncoding29750C29750TCT5555B.1.360.008025
noncoding29750C29750TCT5252AY.540.004958
noncoding29750C29750TCT5151AY.1170.00431
noncoding29750C29750TCT5151B.1.1130.796875
noncoding29750C29750TCT5151B.1.2320.027405
noncoding29750C29750TCT4545AY.230.003139
noncoding29750C29750TCT4545AY.330.003005
noncoding29750C29750TCT4444AY.98.10.002131
noncoding29750C29750TCT4242AY.10.01662
noncoding29750C29750TCT4242B.1.617.10.005417
noncoding29750C29750TCT4141B.1.1600.001279
noncoding29750C29750TCT4040B.1.1.1210.097087
noncoding29750C29750TCT4040P.20.007465
noncoding29750C29750TCT3939AY.1190.001377
noncoding29750C29750TCT3939AY.470.001213
noncoding29750C29750TCT3838B.1.3510.00113
noncoding29750C29750TCT3838B.1.438.10.004076
noncoding29750C29750TCT3636B.1.5820.017664
noncoding29750C29750TCT3535AY.1000.00161
noncoding29750C29750TCT3333B.1.1.3740.078385
noncoding29750C29750TCT3131AY.290.000489
noncoding29750C29750TCT3131AY.5.40.008578
noncoding29750C29750TCT2727AY.450.003285
noncoding29750C29750TCT2727AY.46.60.00195
noncoding29750C29750TCT2626B.1.2340.003431
noncoding29750C29750TCT2626B.1.3560.044905
noncoding29750C29750TCT2525AZ.40.083893
noncoding29750C29750TCT2525B.1.1110.029377
noncoding29750C29750TCT2424B.1.1.470.128342
noncoding29750C29750TCT2323AY.610.00241
noncoding29750C29750TCT2323B.1.1.5190.000913
noncoding29750C29750TCT2323B.1.3110.006315
noncoding29750C29750TCT2020AY.750.00112
noncoding29750C29750TCT2020B.1.5960.001743
noncoding29750C29750TCT1919B.1.177.770.013798
noncoding29750C29750TCT1818B.1.1.460.078603
noncoding29750C29750TCT1818B.1.2210.001279
noncoding29750C29750TCT1717AY.1180.001065
noncoding29750C29750TCT1717AY.460.001769
noncoding29750C29750TCT1717B.1.1.3060.007453
noncoding29750C29750TCT1717B.1.5260.0004
noncoding29750C29750TCT1616AY.370.005057
noncoding29750C29750TCT1616AY.9.10.00134
noncoding29750C29750TCT1616B.1.1280.010165
noncoding29750C29750TCT1414AY.1160.004015
noncoding29750C29750TCT1414AY.4.50.001505
noncoding29750C29750TCT1414AY.410.004115
noncoding29750C29750TCT1414B.1.2580.000932
noncoding29750C29750TCT1414B.1.466.20.005477
noncoding29750C29750TCT1414P.1.140.000669
noncoding29750C29750TCT1313AY.980.001027
noncoding29750C29750TCT1313N.40.055319
noncoding29750C29750TCT1212AY.60.000494
noncoding29750C29750TCT1212B.1.177.70.001978
noncoding29750C29750TCT1212P.1.150.002788
noncoding29750C29750TCT1111AY.120.10.003531
noncoding29750C29750TCT1111AY.4.30.009259
noncoding29750C29750TCT1111B.1.1.2220.002244
noncoding29750C29750TCT1111B.1.1.3970.024775
noncoding29750C29750TCT1111B.1.2470.164179
noncoding29750C29750TCT1111B.1.4270.000555
noncoding29750C29750TCT1111B.1.575.10.026829
noncoding29750C29750TCT1111Q.80.001814
noncoding29750C29750TCT1010AY.1060.003349
noncoding29750C29750TCT1010B.1.1.3870.588235
noncoding29750C29750TCT1010B.1.362.20.04717
noncoding29750C29750TCT1010P.1.40.009766
noncoding29750C29750TCT99AY.1100.001014
noncoding29750C29750TCT99AY.46.40.001481
noncoding29750C29750TCT99AY.75.10.001623
noncoding29750C29750TCT99AY.90.000608
noncoding29750C29750TCT99B.1.1.3840.214286
noncoding29750C29750TCT99B.1.177.90.011984
noncoding29750C29750TCT99B.1.6210.000797
noncoding29750C29750TCT88AY.16.10.003759
noncoding29750C29750TCT88AY.620.003486
noncoding29750C29750TCT88B.1.2100.017058
noncoding29750C29750TCT88B.1.2220.013536
noncoding29750C29750TCT88B.1.6090.003835
noncoding29750C29750TCT88R.10.00072
noncoding29750C29750TCT77AY.39.10.000277
noncoding29750C29750TCT77AY.7.10.000789
noncoding29750C29750TCT77AY.740.00081
noncoding29750C29750TCT77AY.840.003062
noncoding29750C29750TCT77AY.870.005828
noncoding29750C29750TCT77B.1.1.250.00398
noncoding29750C29750TCT77B.1.1.280.002179
noncoding29750C29750TCT77B.1.2430.000487
noncoding29750C29750TCT77B.1.351.50.004197
noncoding29750C29750TCT77B.1.36.180.002941
noncoding29750C29750TCT77B.1.596.10.065421
noncoding29750C29750TCT66AY.100.00318
noncoding29750C29750TCT66AY.1010.002943
noncoding29750C29750TCT66AY.130.000966
noncoding29750C29750TCT66AY.340.000582
noncoding29750C29750TCT66AY.360.000889
noncoding29750C29750TCT66B.1.1.10.00196
noncoding29750C29750TCT66B.1.1.330.002525
noncoding29750C29750TCT66B.1.36.290.003104
noncoding29750C29750TCT66B.1.4050.074074
noncoding29750C29750TCT66B.1.5950.001566
noncoding29750C29750TCT66Q.30.00087
noncoding29750C29750TCT55A0.001935
noncoding29750C29750TCT55AY.190.005701
noncoding29750C29750TCT55AY.270.000324
noncoding29750C29750TCT55AY.590.002648
noncoding29750C29750TCT55AY.710.002375
noncoding29750C29750TCT55B.1.1.2160.004452
noncoding29750C29750TCT55B.1.2400.001078
noncoding29750C29750TCT44AY.1070.001864
noncoding29750C29750TCT44AY.1090.002959
noncoding29750C29750TCT44AY.1110.000733
noncoding29750C29750TCT44AY.120.2.10.001993
noncoding29750C29750TCT44AY.140.000352
noncoding29750C29750TCT44AY.34.10.00204
noncoding29750C29750TCT44AY.4.2.10.000596
noncoding29750C29750TCT44AY.910.002922
noncoding29750C29750TCT44B0.000511
noncoding29750C29750TCT44B.1.1.2140.000222
noncoding29750C29750TCT44B.1.1.630.001543
noncoding29750C29750TCT44B.1.1470.003023
noncoding29750C29750TCT44B.1.177.600.000874
noncoding29750C29750TCT44B.1.177.810.000757
noncoding29750C29750TCT44B.1.2360.008214
noncoding29750C29750TCT44B.1.3780.027397
noncoding29750C29750TCT44B.1.4090.003125
noncoding29750C29750TCT44B.1.5580.018265
noncoding29750C29750TCT44B.1.6280.001409
noncoding29750C29750TCT44B.1.6370.000292
noncoding29750C29750TCT44C.37.10.010471
noncoding29750C29750TCT44Q.10.000505
noncoding29750C29750TCT33AY.160.001139
noncoding29750C29750TCT33AY.39.1.10.002174
noncoding29750C29750TCT33AY.46.10.00308
noncoding29750C29750TCT33AY.46.30.002801
noncoding29750C29750TCT33AY.480.001395
noncoding29750C29750TCT33AY.530.000863
noncoding29750C29750TCT33AY.680.000821
noncoding29750C29750TCT33AY.70.000588
noncoding29750C29750TCT33AY.7.20.001678
noncoding29750C29750TCT33AY.700.000626
noncoding29750C29750TCT33AY.730.001996
noncoding29750C29750TCT33AY.790.003632
noncoding29750C29750TCT33AY.80.001818
noncoding29750C29750TCT33AY.9.2.10.005929
noncoding29750C29750TCT33AY.920.000862
noncoding29750C29750TCT33AY.990.003148
noncoding29750C29750TCT33B.1.1.1590.014019
noncoding29750C29750TCT33B.1.1.2790.003363
noncoding29750C29750TCT33B.1.1.2840.000322
noncoding29750C29750TCT33B.1.1.3180.000905
noncoding29750C29750TCT33B.1.1.3540.013158
noncoding29750C29750TCT33B.1.1.370.000579
noncoding29750C29750TCT33B.1.1.390.001529
noncoding29750C29750TCT33B.1.1.4340.001046
noncoding29750C29750TCT33B.1.1.4640.004418
noncoding29750C29750TCT33B.1.1.700.001023
noncoding29750C29750TCT33B.1.1460.012712
noncoding29750C29750TCT33B.1.177.120.000455
noncoding29750C29750TCT33B.1.177.140.018293
noncoding29750C29750TCT33B.1.177.570.000843
noncoding29750C29750TCT33B.1.177.730.001699
noncoding29750C29750TCT33B.1.258.30.005025
noncoding29750C29750TCT33B.1.3010.017751
noncoding29750C29750TCT33B.1.351.20.000908
noncoding29750C29750TCT33B.1.36.310.005254
noncoding29750C29750TCT33B.1.36.80.003
noncoding29750C29750TCT33B.1.3660.014634
noncoding29750C29750TCT33B.1.3890.003006
noncoding29750C29750TCT33B.1.3960.002117
noncoding29750C29750TCT33B.1.4110.011111
noncoding29750C29750TCT33B.1.5250.000339
noncoding29750C29750TCT33B.1.621.10.001517
noncoding29750C29750TCT33P.1.170.000485
noncoding29750C29750TCT22A.50.003846
noncoding29750C29750TCT22AY.116.10.000623
noncoding29750C29750TCT22AY.120.20.002571
noncoding29750C29750TCT22AY.1210.000271
noncoding29750C29750TCT22AY.23.10.000835
noncoding29750C29750TCT22AY.350.000466
noncoding29750C29750TCT22AY.46.50.000397
noncoding29750C29750TCT22AY.580.001815
noncoding29750C29750TCT22AY.630.000774
noncoding29750C29750TCT22AY.650.001066
noncoding29750C29750TCT22AY.670.000929
noncoding29750C29750TCT22AY.820.002714
noncoding29750C29750TCT22AY.940.000885
noncoding29750C29750TCT22AY.99.10.003106
noncoding29750C29750TCT22B.1.1.100.00223
noncoding29750C29750TCT22B.1.1.2180.015385
noncoding29750C29750TCT22B.1.1.2690.002706
noncoding29750C29750TCT22B.1.1.3260.003521
noncoding29750C29750TCT22B.1.1.3620.011236
noncoding29750C29750TCT22B.1.1.3980.006452
noncoding29750C29750TCT22B.1.1.570.022989
noncoding29750C29750TCT22B.1.1190.021053
noncoding29750C29750TCT22B.1.130.004751
noncoding29750C29750TCT22B.1.1430.042553
noncoding29750C29750TCT22B.1.1570.00597
noncoding29750C29750TCT22B.1.177.160.001329
noncoding29750C29750TCT22B.1.177.210.000153
noncoding29750C29750TCT22B.1.177.430.002954
noncoding29750C29750TCT22B.1.177.860.000367
noncoding29750C29750TCT22B.1.258.110.000793
noncoding29750C29750TCT22B.1.3490.00143
noncoding29750C29750TCT22B.1.5640.000852
noncoding29750C29750TCT22B.1.5650.001621
noncoding29750C29750TCT22B.1.5870.003795
noncoding29750C29750TCT22B.1.9.50.011364
noncoding29750C29750TCT22B.400.000729
noncoding29750C29750TCT22C.300.003454
noncoding29750C29750TCT22C.350.001548
noncoding29750C29750TCT22C.360.001821
noncoding29750C29750TCT22P.1.120.000968
noncoding29750C29750TCT22P.1.20.002312
noncoding29750C29750TCT11A.2.20.001689
noncoding29750C29750TCT11A.2.30.004739
noncoding29750C29750TCT11A.2.50.000499
noncoding29750C29750TCT11A.230.010526
noncoding29750C29750TCT11AA.80.022222
noncoding29750C29750TCT11AY.1050.000643
noncoding29750C29750TCT11AY.1080.001103
noncoding29750C29750TCT11AY.1140.000231
noncoding29750C29750TCT11AY.1150.005208
noncoding29750C29750TCT11AY.120.000316
noncoding29750C29750TCT11AY.280.00189
noncoding29750C29750TCT11AY.29.10.000221
noncoding29750C29750TCT11AY.3.10.000085
noncoding29750C29750TCT11AY.300.000396
noncoding29750C29750TCT11AY.320.000532
noncoding29750C29750TCT11AY.5.20.002463
noncoding29750C29750TCT11AY.500.000799
noncoding29750C29750TCT11AY.550.000917
noncoding29750C29750TCT11AY.560.001605
noncoding29750C29750TCT11AY.570.000656
noncoding29750C29750TCT11AY.600.000938
noncoding29750C29750TCT11AY.640.000595
noncoding29750C29750TCT11AY.770.001127
noncoding29750C29750TCT11AY.830.001724
noncoding29750C29750TCT11AY.850.000427
noncoding29750C29750TCT11AY.880.000884
noncoding29750C29750TCT11AY.930.000273
noncoding29750C29750TCT11AY.950.000761
noncoding29750C29750TCT11AZ.60.008403
noncoding29750C29750TCT11B.1.1.1170.009709
noncoding29750C29750TCT11B.1.1.1380.006061
noncoding29750C29750TCT11B.1.1.1410.002012
noncoding29750C29750TCT11B.1.1.1570.000913
noncoding29750C29750TCT11B.1.1.1580.012195
noncoding29750C29750TCT11B.1.1.1700.001247
noncoding29750C29750TCT11B.1.1.1740.003378
noncoding29750C29750TCT11B.1.1.2290.005747
noncoding29750C29750TCT11B.1.1.2570.009709
noncoding29750C29750TCT11B.1.1.2620.015152
noncoding29750C29750TCT11B.1.1.2630.001558
noncoding29750C29750TCT11B.1.1.2910.000742
noncoding29750C29750TCT11B.1.1.2940.001266
noncoding29750C29750TCT11B.1.1.3010.001179
noncoding29750C29750TCT11B.1.1.3030.002762
noncoding29750C29750TCT11B.1.1.3110.000358
noncoding29750C29750TCT11B.1.1.3220.008772
noncoding29750C29750TCT11B.1.1.3370.003597
noncoding29750C29750TCT11B.1.1.3480.000796
noncoding29750C29750TCT11B.1.1.3510.002793
noncoding29750C29750TCT11B.1.1.3630.005988
noncoding29750C29750TCT11B.1.1.3690.000446
noncoding29750C29750TCT11B.1.1.3720.000689
noncoding29750C29750TCT11B.1.1.3730.02381
noncoding29750C29750TCT11B.1.1.3890.006061
noncoding29750C29750TCT11B.1.1.4090.002833
noncoding29750C29750TCT11B.1.1.4130.006897
noncoding29750C29750TCT11B.1.1.430.014925
noncoding29750C29750TCT11B.1.1.4320.001266
noncoding29750C29750TCT11B.1.1.4520.111111
noncoding29750C29750TCT11B.1.1.4620.008621
noncoding29750C29750TCT11B.1.1.4860.001577
noncoding29750C29750TCT11B.1.1.500.000679
noncoding29750C29750TCT11B.1.1.5230.001563
noncoding29750C29750TCT11B.1.1.5250.005464
noncoding29750C29750TCT11B.1.110.30.000718
noncoding29750C29750TCT11B.1.1400.018868
noncoding29750C29750TCT11B.1.160.310.008065
noncoding29750C29750TCT11B.1.1670.007812
noncoding29750C29750TCT11B.1.177.190.001431
noncoding29750C29750TCT11B.1.177.330.001645
noncoding29750C29750TCT11B.1.177.350.000691
noncoding29750C29750TCT11B.1.177.440.000519
noncoding29750C29750TCT11B.1.177.450.000381
noncoding29750C29750TCT11B.1.177.540.000606
noncoding29750C29750TCT11B.1.177.580.001332
noncoding29750C29750TCT11B.1.177.60.000977
noncoding29750C29750TCT11B.1.177.650.000665
noncoding29750C29750TCT11B.1.177.750.001041
noncoding29750C29750TCT11B.1.177.790.002342
noncoding29750C29750TCT11B.1.177.870.000728
noncoding29750C29750TCT11B.1.1820.007246
noncoding29750C29750TCT11B.1.1890.004292
noncoding29750C29750TCT11B.1.2060.000816
noncoding29750C29750TCT11B.1.230.006061
noncoding29750C29750TCT11B.1.36.10.00114
noncoding29750C29750TCT11B.1.36.210.00216
noncoding29750C29750TCT11B.1.36.220.001208
noncoding29750C29750TCT11B.1.36.350.002604
noncoding29750C29750TCT11B.1.36.360.000602
noncoding29750C29750TCT11B.1.36.90.003215
noncoding29750C29750TCT11B.1.3620.001541
noncoding29750C29750TCT11B.1.3670.000792
noncoding29750C29750TCT11B.1.3750.00082
noncoding29750C29750TCT11B.1.416.10.001563
noncoding29750C29750TCT11B.1.4230.010204
noncoding29750C29750TCT11B.1.4250.002994
noncoding29750C29750TCT11B.1.4320.011236
noncoding29750C29750TCT11B.1.4330.003195
noncoding29750C29750TCT11B.1.438.40.021277
noncoding29750C29750TCT11B.1.4560.003268
noncoding29750C29750TCT11B.1.4740.001901
noncoding29750C29750TCT11B.1.4850.014925
noncoding29750C29750TCT11B.1.5030.002488
noncoding29750C29750TCT11B.1.5230.002451
noncoding29750C29750TCT11B.1.5240.001406
noncoding29750C29750TCT11B.1.5400.009709
noncoding29750C29750TCT11B.1.5510.00129
noncoding29750C29750TCT11B.1.5600.00463
noncoding29750C29750TCT11B.1.5610.000397
noncoding29750C29750TCT11B.1.5670.003333
noncoding29750C29750TCT11B.1.5770.000687
noncoding29750C29750TCT11B.1.6000.005848
noncoding29750C29750TCT11B.1.6120.002653
noncoding29750C29750TCT11B.1.6180.004032
noncoding29750C29750TCT11B.1.6290.013333
noncoding29750C29750TCT11B.1.9.40.006135
noncoding29750C29750TCT11B.310.003731
noncoding29750C29750TCT11C.390.018868
noncoding29750C29750TCT11C.400.027778
noncoding29750C29750TCT11L.30.003546
noncoding29750C29750TCT11P.1.10.000318
noncoding29750C29750TCT11P.1.100.000269
noncoding29750C29750TCT11P.1.80.004785
noncoding29750C29750TCT11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.