CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29738 | C29738- | noncoding | C | - | 33151 | 33151 | 1 | 29738-29738 |
Details of the mutation C29738- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29738 | C29738- | C | - | 33151 | 33151 | All | 0.006341 |
noncoding | 29738 | C29738- | C | - | 9377 | 9377 | B.1.526 | 0.220402 |
noncoding | 29738 | C29738- | C | - | 5089 | 5089 | B.1.1.7 | 0.004556 |
noncoding | 29738 | C29738- | C | - | 3716 | 3716 | B.1.525 | 0.420505 |
noncoding | 29738 | C29738- | C | - | 1958 | 1958 | AY.4 | 0.003047 |
noncoding | 29738 | C29738- | C | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
noncoding | 29738 | C29738- | C | - | 832 | 832 | AY.38 | 0.415377 |
noncoding | 29738 | C29738- | C | - | 545 | 545 | B.1.429 | 0.012823 |
noncoding | 29738 | C29738- | C | - | 524 | 524 | B.1.617.2 | 0.001973 |
noncoding | 29738 | C29738- | C | - | 393 | 393 | B.1.177 | 0.005175 |
noncoding | 29738 | C29738- | C | - | 387 | 387 | B.1 | 0.003545 |
noncoding | 29738 | C29738- | C | - | 373 | 373 | B.1.177.81 | 0.070617 |
noncoding | 29738 | C29738- | C | - | 365 | 365 | B.1.351.2 | 0.110439 |
noncoding | 29738 | C29738- | C | - | 354 | 354 | B.1.497 | 0.111426 |
noncoding | 29738 | C29738- | C | - | 338 | 338 | B.1.2 | 0.002976 |
noncoding | 29738 | C29738- | C | - | 305 | 305 | P.1 | 0.004805 |
noncoding | 29738 | C29738- | C | - | 304 | 304 | AY.39 | 0.007512 |
noncoding | 29738 | C29738- | C | - | 286 | 286 | AY.5 | 0.005906 |
noncoding | 29738 | C29738- | C | - | 286 | 286 | B.1.258.11 | 0.113357 |
noncoding | 29738 | C29738- | C | - | 276 | 276 | AY.25 | 0.00166 |
noncoding | 29738 | C29738- | C | - | 217 | 217 | B.1.221 | 0.015414 |
noncoding | 29738 | C29738- | C | - | 206 | 206 | B.1.1 | 0.003737 |
noncoding | 29738 | C29738- | C | - | 199 | 199 | B.1.160 | 0.006206 |
noncoding | 29738 | C29738- | C | - | 185 | 185 | AY.103 | 0.001149 |
noncoding | 29738 | C29738- | C | - | 175 | 175 | B.1.351 | 0.005202 |
noncoding | 29738 | C29738- | C | - | 158 | 158 | B.1.626 | 0.902857 |
noncoding | 29738 | C29738- | C | - | 154 | 154 | B.1.621 | 0.013632 |
noncoding | 29738 | C29738- | C | - | 152 | 152 | AY.43 | 0.000673 |
noncoding | 29738 | C29738- | C | - | 145 | 145 | AY.46.6 | 0.01047 |
noncoding | 29738 | C29738- | C | - | 144 | 144 | D.5 | 0.716418 |
noncoding | 29738 | C29738- | C | - | 137 | 137 | B.1.427 | 0.006918 |
noncoding | 29738 | C29738- | C | - | 113 | 113 | AY.120 | 0.004201 |
noncoding | 29738 | C29738- | C | - | 110 | 110 | B.1.258 | 0.00732 |
noncoding | 29738 | C29738- | C | - | 108 | 108 | AY.44 | 0.000657 |
noncoding | 29738 | C29738- | C | - | 105 | 105 | B.1.1.519 | 0.00417 |
noncoding | 29738 | C29738- | C | - | 104 | 104 | B.1.1.294 | 0.131646 |
noncoding | 29738 | C29738- | C | - | 102 | 102 | AY.42 | 0.004103 |
noncoding | 29738 | C29738- | C | - | 97 | 97 | AY.47 | 0.003017 |
noncoding | 29738 | C29738- | C | - | 96 | 96 | AY.73 | 0.063872 |
noncoding | 29738 | C29738- | C | - | 89 | 89 | AY.3 | 0.000885 |
noncoding | 29738 | C29738- | C | - | 80 | 80 | B.1.243 | 0.005567 |
noncoding | 29738 | C29738- | C | - | 67 | 67 | B.1.596 | 0.005838 |
noncoding | 29738 | C29738- | C | - | 65 | 65 | B.1.561 | 0.025804 |
noncoding | 29738 | C29738- | C | - | 53 | 53 | D.2 | 0.003977 |
noncoding | 29738 | C29738- | C | - | 48 | 48 | C.16 | 0.050901 |
noncoding | 29738 | C29738- | C | - | 47 | 47 | AY.20 | 0.001827 |
noncoding | 29738 | C29738- | C | - | 44 | 44 | B.1.177.24 | 0.056995 |
noncoding | 29738 | C29738- | C | - | 44 | 44 | P.1.14 | 0.002103 |
noncoding | 29738 | C29738- | C | - | 43 | 43 | B.1.177.60 | 0.009393 |
noncoding | 29738 | C29738- | C | - | 43 | 43 | R.1 | 0.00387 |
noncoding | 29738 | C29738- | C | - | 41 | 41 | AY.102 | 0.001087 |
noncoding | 29738 | C29738- | C | - | 41 | 41 | P.1.16 | 0.015339 |
noncoding | 29738 | C29738- | C | - | 38 | 38 | M.1 | 0.883721 |
noncoding | 29738 | C29738- | C | - | 37 | 37 | B.1.637 | 0.002704 |
noncoding | 29738 | C29738- | C | - | 35 | 35 | AY.26 | 0.000991 |
noncoding | 29738 | C29738- | C | - | 35 | 35 | AY.29 | 0.000552 |
noncoding | 29738 | C29738- | C | - | 34 | 34 | AY.119 | 0.0012 |
noncoding | 29738 | C29738- | C | - | 33 | 33 | B.1.258.17 | 0.003431 |
noncoding | 29738 | C29738- | C | - | 32 | 32 | B.1.595 | 0.008351 |
noncoding | 29738 | C29738- | C | - | 31 | 31 | B.1.1.434 | 0.010805 |
noncoding | 29738 | C29738- | C | - | 29 | 29 | AY.100 | 0.001334 |
noncoding | 29738 | C29738- | C | - | 29 | 29 | AY.4.2 | 0.000629 |
noncoding | 29738 | C29738- | C | - | 29 | 29 | B.1.619 | 0.025261 |
noncoding | 29738 | C29738- | C | - | 28 | 28 | B.1.623 | 0.015021 |
noncoding | 29738 | C29738- | C | - | 27 | 27 | B.1.1.37 | 0.005207 |
noncoding | 29738 | C29738- | C | - | 27 | 27 | B.1.346 | 0.035387 |
noncoding | 29738 | C29738- | C | - | 26 | 26 | AY.6 | 0.001069 |
noncoding | 29738 | C29738- | C | - | 24 | 24 | B.1.1.63 | 0.009259 |
noncoding | 29738 | C29738- | C | - | 23 | 23 | C.37 | 0.002669 |
noncoding | 29738 | C29738- | C | - | 22 | 22 | B.1.1.368 | 0.067901 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.1.222 | 0.004284 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.1.265 | 0.066246 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.1.39 | 0.010703 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.240 | 0.004527 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.305 | 0.045161 |
noncoding | 29738 | C29738- | C | - | 21 | 21 | B.1.404 | 0.027344 |
noncoding | 29738 | C29738- | C | - | 20 | 20 | B.1.289 | 0.053191 |
noncoding | 29738 | C29738- | C | - | 20 | 20 | B.1.576 | 0.018132 |
noncoding | 29738 | C29738- | C | - | 20 | 20 | B.1.588 | 0.018198 |
noncoding | 29738 | C29738- | C | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | AY.45 | 0.00219 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | B.1.1.172 | 0.327273 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | B.1.1.307 | 0.04557 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | B.1.556 | 0.135338 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | B.1.575 | 0.005461 |
noncoding | 29738 | C29738- | C | - | 18 | 18 | P.2 | 0.003359 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | AY.118 | 0.001065 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.1.214 | 0.000943 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.1.28 | 0.005291 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.1.33 | 0.007155 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.241 | 0.013799 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.311 | 0.004668 |
noncoding | 29738 | C29738- | C | - | 17 | 17 | B.1.562 | 0.314815 |
noncoding | 29738 | C29738- | C | - | 16 | 16 | B.1.1.174 | 0.054054 |
noncoding | 29738 | C29738- | C | - | 16 | 16 | B.1.177.86 | 0.002935 |
noncoding | 29738 | C29738- | C | - | 16 | 16 | B.1.258.14 | 0.015686 |
noncoding | 29738 | C29738- | C | - | 16 | 16 | B.1.36.29 | 0.008277 |
noncoding | 29738 | C29738- | C | - | 15 | 15 | B.1.36.1 | 0.017104 |
noncoding | 29738 | C29738- | C | - | 15 | 15 | B.1.36.18 | 0.006303 |
noncoding | 29738 | C29738- | C | - | 14 | 14 | AY.61 | 0.001467 |
noncoding | 29738 | C29738- | C | - | 14 | 14 | AY.75.1 | 0.002524 |
noncoding | 29738 | C29738- | C | - | 14 | 14 | B.1.177.7 | 0.002308 |
noncoding | 29738 | C29738- | C | - | 14 | 14 | B.1.581 | 0.132075 |
noncoding | 29738 | C29738- | C | - | 13 | 13 | AY.74 | 0.001503 |
noncoding | 29738 | C29738- | C | - | 13 | 13 | AY.98.1 | 0.00063 |
noncoding | 29738 | C29738- | C | - | 13 | 13 | B.1.1.25 | 0.007391 |
noncoding | 29738 | C29738- | C | - | 13 | 13 | B.1.1.306 | 0.005699 |
noncoding | 29738 | C29738- | C | - | 12 | 12 | B.1.1.416 | 0.01086 |
noncoding | 29738 | C29738- | C | - | 12 | 12 | B.1.36 | 0.001751 |
noncoding | 29738 | C29738- | C | - | 12 | 12 | B.1.416 | 0.015228 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | A.1 | 0.0031 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | AY.117 | 0.00093 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | AY.75 | 0.000616 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | AY.9 | 0.000744 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | AY.9.2 | 0.000404 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | B.1.1.317 | 0.004529 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | B.1.177.62 | 0.013111 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | B.1.177.75 | 0.011446 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | B.1.234 | 0.001451 |
noncoding | 29738 | C29738- | C | - | 11 | 11 | P.1.15 | 0.002556 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | AY.114 | 0.002311 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | AY.23 | 0.000697 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | AY.46.4 | 0.001645 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | B | 0.001278 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | B.1.1.397 | 0.022523 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | B.1.400 | 0.00429 |
noncoding | 29738 | C29738- | C | - | 10 | 10 | P.1.4 | 0.009766 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | AY.12 | 0.002845 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | AY.2 | 0.003205 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | AY.34.1 | 0.004589 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | AY.46 | 0.000937 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | AY.46.5 | 0.001786 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.149 | 0.030822 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.160.14 | 0.019068 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.177.50 | 0.042254 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.258.3 | 0.015075 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.398 | 0.026786 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | B.1.422 | 0.007311 |
noncoding | 29738 | C29738- | C | - | 9 | 9 | P.1.7 | 0.002874 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | AY.34 | 0.000776 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | AY.54 | 0.000763 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | AY.99.2 | 0.000737 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | B.1.1.153 | 0.008762 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | B.1.1.316 | 0.007401 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | B.1.36.22 | 0.009662 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | B.1.466.2 | 0.00313 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | B.1.93 | 0.00747 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | C.36.3 | 0.004538 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | P.1.1 | 0.002541 |
noncoding | 29738 | C29738- | C | - | 8 | 8 | Q.4 | 0.003638 |
noncoding | 29738 | C29738- | C | - | 7 | 7 | AY.13 | 0.001127 |
noncoding | 29738 | C29738- | C | - | 7 | 7 | AY.85 | 0.00299 |
noncoding | 29738 | C29738- | C | - | 7 | 7 | B.1.1.526 | 0.024823 |
noncoding | 29738 | C29738- | C | - | 7 | 7 | B.1.160.33 | 0.030973 |
noncoding | 29738 | C29738- | C | - | 7 | 7 | B.1.399 | 0.01354 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | A | 0.002322 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | AY.14 | 0.000528 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | AY.33 | 0.000401 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | AY.35 | 0.001398 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | AY.65 | 0.003198 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.1.1.318 | 0.001811 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.1.110.3 | 0.00431 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.1.389 | 0.006012 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.1.609 | 0.002876 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.39 | 0.013986 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | B.40 | 0.002186 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | N.4 | 0.025532 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | N.5 | 0.010601 |
noncoding | 29738 | C29738- | C | - | 6 | 6 | Q.2 | 0.003681 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | AY.36 | 0.000741 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.1.189 | 0.007564 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.1.198 | 0.007342 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.1.288 | 0.009579 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.1.369 | 0.002231 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.177.32 | 0.006748 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.177.73 | 0.002831 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.177.87 | 0.003639 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.210 | 0.010661 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.279 | 0.002568 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | B.1.416.1 | 0.007812 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | P.1.17 | 0.000809 |
noncoding | 29738 | C29738- | C | - | 5 | 5 | P.5 | 0.068493 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | A.2.5 | 0.001996 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | AY.109 | 0.002959 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | AY.30 | 0.001583 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | AY.59 | 0.002119 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | AY.84 | 0.00175 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.1 | 0.001307 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.312 | 0.007648 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.337 | 0.014388 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.385 | 0.017857 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.41 | 0.025316 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.46 | 0.017467 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.1.464 | 0.005891 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.177.12 | 0.000607 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.177.18 | 0.00464 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.177.42 | 0.003578 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.177.56 | 0.00267 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.351.3 | 0.003506 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.438.1 | 0.000429 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.469 | 0.01444 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.568 | 0.004444 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | B.1.582 | 0.001963 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | P.1.12 | 0.001936 |
noncoding | 29738 | C29738- | C | - | 4 | 4 | Q.1 | 0.000505 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.110 | 0.000338 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.27 | 0.000194 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.32 | 0.001597 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.39.1 | 0.000119 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.40 | 0.002893 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.5.3 | 0.001012 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.51 | 0.002727 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.62 | 0.001307 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.7 | 0.000588 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.135 | 0.014085 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.192 | 0.006928 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.228 | 0.009146 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.236 | 0.02069 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.277 | 0.002276 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.375 | 0.035714 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.401 | 0.2 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.428 | 0.028302 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.518 | 0.018987 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.57 | 0.034483 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.1.70 | 0.001023 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.145 | 0.157895 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.177.21 | 0.000229 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.177.37 | 0.081081 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.177.44 | 0.001557 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.206 | 0.002447 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.229 | 0.029126 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.258.21 | 0.023256 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.349 | 0.002144 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.36.16 | 0.004274 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.36.17 | 0.001482 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.36.31 | 0.005254 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.369 | 0.000856 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.396 | 0.002117 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.409 | 0.002344 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.44 | 0.025 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.441 | 0.028846 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.505 | 0.013158 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.517 | 0.001281 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.560 | 0.013889 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.577 | 0.002062 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.590 | 0.013636 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | B.1.627 | 0.006061 |
noncoding | 29738 | C29738- | C | - | 3 | 3 | P.1.10 | 0.000808 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | A.2.3 | 0.009479 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AA.1 | 0.014493 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AN.1 | 0.04 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.10 | 0.00106 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.106 | 0.00067 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.111 | 0.000366 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.46.3 | 0.001867 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.56 | 0.00321 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.71 | 0.00095 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.94 | 0.000885 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AY.95 | 0.001522 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | AZ.2 | 0.001642 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.170 | 0.002494 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.194 | 0.009901 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.216 | 0.001781 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.275 | 0.022472 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.284 | 0.000215 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.289 | 0.004167 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.303 | 0.005525 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.305 | 0.007722 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.345 | 0.086957 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.372 | 0.001377 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.376 | 0.011905 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.389 | 0.012121 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.466 | 0.017391 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.528 | 0.009615 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.1.71 | 0.012121 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.126 | 0.002551 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.160.32 | 0.008584 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.10 | 0.001756 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.4 | 0.000422 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.51 | 0.009132 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.55 | 0.004662 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.6 | 0.001953 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.77 | 0.001452 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.177.78 | 0.019417 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.189 | 0.008584 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.214.2 | 0.001199 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.23 | 0.012121 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.258.10 | 0.022727 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.298 | 0.004228 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.301 | 0.011834 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.350 | 0.005865 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.36.10 | 0.009569 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.36.26 | 0.005714 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.391 | 0.002255 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.425 | 0.005988 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.436 | 0.002058 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.470 | 0.002809 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.503 | 0.004975 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.509 | 0.001732 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.543 | 0.02 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.551 | 0.002581 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.565 | 0.001621 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.567 | 0.006667 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.575.1 | 0.004878 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.597 | 0.009259 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.620 | 0.001892 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.1.628 | 0.000705 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | B.3.1 | 0.003317 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | C.36 | 0.001821 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | C.36.2 | 0.068966 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | C.38 | 0.016129 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | P.1.13 | 0.001797 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | P.6 | 0.006289 |
noncoding | 29738 | C29738- | C | - | 2 | 2 | Q.8 | 0.00033 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | A.2 | 0.000662 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | A.30 | 0.142857 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AH.2 | 0.012048 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AK.2 | 0.045455 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AT.1 | 0.005128 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AU.1 | 0.001266 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AU.3 | 0.00211 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.108 | 0.001103 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.48 | 0.000465 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.52 | 0.000814 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.53 | 0.000288 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.66 | 0.00107 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.88 | 0.000884 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | AZ.1 | 0.000867 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.154 | 0.04 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.186 | 0.003436 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.196 | 0.005714 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.205 | 0.003717 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.227 | 0.004348 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.229 | 0.005747 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.286 | 0.002899 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.297 | 0.002237 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.298 | 0.000862 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.352 | 0.03125 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.362 | 0.005618 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.433 | 0.001425 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.47 | 0.005348 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.1.517 | 0.006803 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.159 | 0.012195 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.160.15 | 0.00495 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.160.27 | 0.015152 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.162 | 0.005025 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.167 | 0.007812 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.30 | 0.002513 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.46 | 0.000918 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.65 | 0.000665 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.79 | 0.002342 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.177.9 | 0.001332 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.181 | 0.019608 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.214 | 0.003663 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.221.4 | 0.004167 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.232 | 0.000537 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.237 | 0.004975 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.291 | 0.019231 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.336 | 0.002439 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.337 | 0.005587 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.340 | 0.004292 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.359 | 0.022727 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.36.38 | 0.001642 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.375 | 0.00082 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.390 | 0.010638 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.424 | 0.008065 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.433 | 0.003195 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.478 | 0.011765 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.493 | 0.025641 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.508 | 0.025641 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.530 | 0.007143 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.547 | 0.02439 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.558 | 0.004566 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.564 | 0.000426 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.580 | 0.004065 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.595.1 | 0.005848 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.600 | 0.005848 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.633 | 0.041667 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.1.81 | 0.021277 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.3 | 0.000831 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.31 | 0.003731 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.4.2 | 0.066667 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.55 | 0.00295 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.58 | 0.010204 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | C.1 | 0.002392 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | C.1.2 | 0.004255 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | C.18 | 0.002591 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | C.35 | 0.000774 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | P.1.11 | 0.010204 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | P.7 | 0.004367 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | Q.7 | 0.001111 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | U.3 | 0.003861 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | W.1 | 0.008696 |
noncoding | 29738 | C29738- | C | - | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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