CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29733T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29733C29733TnoncodingCT1347213472129733-29733

Details of the mutation C29733T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29733C29733TCT1347213472All0.002577
noncoding29733C29733TCT25202520B.1.1.70.002256
noncoding29733C29733TCT16591659AY.40.002582
noncoding29733C29733TCT693693AY.250.004168
noncoding29733C29733TCT667667B.1.617.20.002512
noncoding29733C29733TCT536536B.1.20.00472
noncoding29733C29733TCT396396AY.60.016287
noncoding29733C29733TCT308308AY.1110.05641
noncoding29733C29733TCT264264AY.440.001607
noncoding29733C29733TCT246246B.1.2790.126348
noncoding29733C29733TCT243243B.1.1490.832192
noncoding29733C29733TCT238238AY.1030.001478
noncoding29733C29733TCT223223B.1.10.004045
noncoding29733C29733TCT206206AY.30.002049
noncoding29733C29733TCT201201AY.430.000891
noncoding29733C29733TCT199199B.1.4290.004682
noncoding29733C29733TCT182182B.10.001667
noncoding29733C29733TCT174174B.1.1.4160.157466
noncoding29733C29733TCT172172B.1.177.860.031554
noncoding29733C29733TCT169169B.1.1.5190.006711
noncoding29733C29733TCT165165B.1.4000.070785
noncoding29733C29733TCT154154AY.1000.007085
noncoding29733C29733TCT152152AY.1210.020568
noncoding29733C29733TCT152152AY.46.40.025004
noncoding29733C29733TCT140140B.1.1770.001843
noncoding29733C29733TCT136136AY.290.002145
noncoding29733C29733TCT131131B.1.4530.423948
noncoding29733C29733TCT118118B.1.177.40.024905
noncoding29733C29733TCT111111AY.1020.002943
noncoding29733C29733TCT102102P.10.001607
noncoding29733C29733TCT8787B.1.1.250.04946
noncoding29733C29733TCT8484C.350.065015
noncoding29733C29733TCT8181B.1.1.2840.008699
noncoding29733C29733TCT7777AY.1190.002719
noncoding29733C29733TCT7373B.1.1.3510.203911
noncoding29733C29733TCT6868B.1.5260.001598
noncoding29733C29733TCT5959AY.390.001458
noncoding29733C29733TCT4949B.1.1600.001528
noncoding29733C29733TCT4949B.1.2210.003481
noncoding29733C29733TCT4747AY.1140.010862
noncoding29733C29733TCT4747AY.420.001891
noncoding29733C29733TCT4444AY.50.000909
noncoding29733C29733TCT4242AY.470.001306
noncoding29733C29733TCT4242B.1.1.3480.033439
noncoding29733C29733TCT4141AY.9.20.001506
noncoding29733C29733TCT4040AY.1180.002506
noncoding29733C29733TCT4040AY.260.001132
noncoding29733C29733TCT4040B.1.416.10.0625
noncoding29733C29733TCT3838B.1.1.390.019368
noncoding29733C29733TCT3737AY.200.001438
noncoding29733C29733TCT3737D.20.002777
noncoding29733C29733TCT3636AY.4.20.000781
noncoding29733C29733TCT3636B.1.1.370.006943
noncoding29733C29733TCT3636B.1.3510.00107
noncoding29733C29733TCT3434B.1.6210.00301
noncoding29733C29733TCT3232AY.1200.00119
noncoding29733C29733TCT3232AY.230.002232
noncoding29733C29733TCT3232AY.4.2.10.004768
noncoding29733C29733TCT3131AY.9.10.002595
noncoding29733C29733TCT2929B.1.1.2220.005916
noncoding29733C29733TCT2828B.1.5960.00244
noncoding29733C29733TCT2727C.370.003134
noncoding29733C29733TCT2525B.1.177.600.005461
noncoding29733C29733TCT2424B.1.1.4340.008365
noncoding29733C29733TCT2424B.1.2430.00167
noncoding29733C29733TCT2424B.1.36.10.027366
noncoding29733C29733TCT2323B.1.2580.001531
noncoding29733C29733TCT2121AY.450.002555
noncoding29733C29733TCT2121AY.75.10.003787
noncoding29733C29733TCT2121AY.90.001419
noncoding29733C29733TCT2121B.1.177.150.013249
noncoding29733C29733TCT2121B.1.466.20.008216
noncoding29733C29733TCT2020B.1.4270.00101
noncoding29733C29733TCT1919AY.750.001064
noncoding29733C29733TCT1919B.1.177.30.145038
noncoding29733C29733TCT1818AY.4.50.001935
noncoding29733C29733TCT1818AY.460.001873
noncoding29733C29733TCT1818B.1.177.70.002967
noncoding29733C29733TCT1818B.1.2340.002375
noncoding29733C29733TCT1717AY.1160.004875
noncoding29733C29733TCT1717AY.5.30.005735
noncoding29733C29733TCT1717AY.570.011155
noncoding29733C29733TCT1717AY.99.20.001567
noncoding29733C29733TCT1717B.1.1.500.011541
noncoding29733C29733TCT1616AY.690.002987
noncoding29733C29733TCT1616B.1.1.1890.024206
noncoding29733C29733TCT1616C.160.016967
noncoding29733C29733TCT1616C.36.30.009075
noncoding29733C29733TCT1515AY.1170.001268
noncoding29733C29733TCT1515AY.270.000971
noncoding29733C29733TCT1515P.1.140.000717
noncoding29733C29733TCT1515P.1.170.002426
noncoding29733C29733TCT1414AY.3.10.001194
noncoding29733C29733TCT1414B.1.1.3160.012951
noncoding29733C29733TCT1414B.1.360.002043
noncoding29733C29733TCT1414P.20.002613
noncoding29733C29733TCT1313B.1.4160.016497
noncoding29733C29733TCT1313R.10.00117
noncoding29733C29733TCT1212B.1.5090.01039
noncoding29733C29733TCT1212B.1.617.10.001548
noncoding29733C29733TCT1111AY.740.001272
noncoding29733C29733TCT1111B.1.351.20.003328
noncoding29733C29733TCT1111B.1.6370.000804
noncoding29733C29733TCT1111Q.10.00139
noncoding29733C29733TCT1010AY.330.000668
noncoding29733C29733TCT1010AY.840.004374
noncoding29733C29733TCT1010B.1.3690.002852
noncoding29733C29733TCT99AY.160.003417
noncoding29733C29733TCT99AY.980.000711
noncoding29733C29733TCT99AY.98.10.000436
noncoding29733C29733TCT99B0.00115
noncoding29733C29733TCT99B.1.258.110.003567
noncoding29733C29733TCT99B.1.36.290.004656
noncoding29733C29733TCT88A.10.002255
noncoding29733C29733TCT88AY.46.60.000578
noncoding29733C29733TCT88B.1.177.440.004152
noncoding29733C29733TCT88B.1.5950.002088
noncoding29733C29733TCT88P.1.40.007812
noncoding29733C29733TCT88Q.30.00116
noncoding29733C29733TCT88Q.80.001319
noncoding29733C29733TCT77AY.340.000679
noncoding29733C29733TCT77B.1.177.810.001325
noncoding29733C29733TCT77B.1.6090.003356
noncoding29733C29733TCT66AZ.20.004926
noncoding29733C29733TCT66B.1.1.2140.000333
noncoding29733C29733TCT66B.1.1.3170.00247
noncoding29733C29733TCT66B.1.177.210.000459
noncoding29733C29733TCT66B.1.1790.022556
noncoding29733C29733TCT66B.1.36.240.037037
noncoding29733C29733TCT66B.1.36.310.010508
noncoding29733C29733TCT66B.1.4380.039216
noncoding29733C29733TCT66B.1.5650.004862
noncoding29733C29733TCT66B.1.5820.002944
noncoding29733C29733TCT55AY.410.00147
noncoding29733C29733TCT55AY.46.20.003177
noncoding29733C29733TCT55AY.530.001438
noncoding29733C29733TCT55AY.540.000477
noncoding29733C29733TCT55AY.550.004587
noncoding29733C29733TCT55AY.610.000524
noncoding29733C29733TCT55AY.70.00098
noncoding29733C29733TCT55B.1.1.330.002104
noncoding29733C29733TCT55B.1.2400.001078
noncoding29733C29733TCT44AD.20.000876
noncoding29733C29733TCT44AY.1060.00134
noncoding29733C29733TCT44AY.1070.001864
noncoding29733C29733TCT44AY.130.000644
noncoding29733C29733TCT44AY.140.000352
noncoding29733C29733TCT44AY.300.001583
noncoding29733C29733TCT44AY.680.001095
noncoding29733C29733TCT44AY.700.000834
noncoding29733C29733TCT44AY.850.001709
noncoding29733C29733TCT44B.1.1.10.001307
noncoding29733C29733TCT44B.1.1.280.001245
noncoding29733C29733TCT44B.1.1.3980.012903
noncoding29733C29733TCT44N.50.007067
noncoding29733C29733TCT44P.1.10.001271
noncoding29733C29733TCT33A.23.10.002113
noncoding29733C29733TCT33AY.1050.001929
noncoding29733C29733TCT33AY.190.003421
noncoding29733C29733TCT33AY.23.10.001252
noncoding29733C29733TCT33AY.280.005671
noncoding29733C29733TCT33AY.360.000445
noncoding29733C29733TCT33AY.39.10.000119
noncoding29733C29733TCT33AY.46.30.002801
noncoding29733C29733TCT33AY.580.002722
noncoding29733C29733TCT33AY.590.001589
noncoding29733C29733TCT33AY.7.10.000338
noncoding29733C29733TCT33AY.790.003632
noncoding29733C29733TCT33AY.830.005172
noncoding29733C29733TCT33AZ.10.002602
noncoding29733C29733TCT33B.1.1.1710.011029
noncoding29733C29733TCT33B.1.1.2630.004673
noncoding29733C29733TCT33B.1.1.3330.003229
noncoding29733C29733TCT33B.1.1.3680.009259
noncoding29733C29733TCT33B.1.1570.008955
noncoding29733C29733TCT33B.1.2650.003812
noncoding29733C29733TCT33B.1.5250.000339
noncoding29733C29733TCT33B.1.5400.029126
noncoding29733C29733TCT33B.1.5750.00091
noncoding29733C29733TCT33B.1.5790.033708
noncoding29733C29733TCT33B.1.595.10.017544
noncoding29733C29733TCT33B.60.00273
noncoding29733C29733TCT33C.110.031915
noncoding29733C29733TCT33P.1.70.000958
noncoding29733C29733TCT33W.40.004054
noncoding29733C29733TCT22A.2.50.000998
noncoding29733C29733TCT22A.210.00554
noncoding29733C29733TCT22A.270.003311
noncoding29733C29733TCT22AY.1080.002205
noncoding29733C29733TCT22AY.110.002677
noncoding29733C29733TCT22AY.1100.000225
noncoding29733C29733TCT22AY.1130.000285
noncoding29733C29733TCT22AY.240.000862
noncoding29733C29733TCT22AY.320.001065
noncoding29733C29733TCT22AY.350.000466
noncoding29733C29733TCT22AY.4.30.001684
noncoding29733C29733TCT22AY.5.40.000553
noncoding29733C29733TCT22AY.630.000774
noncoding29733C29733TCT22AY.910.001461
noncoding29733C29733TCT22AY.920.000575
noncoding29733C29733TCT22B.1.1.1440.057143
noncoding29733C29733TCT22B.1.1.1530.002191
noncoding29733C29733TCT22B.1.1.2260.011628
noncoding29733C29733TCT22B.1.1.2410.004141
noncoding29733C29733TCT22B.1.1.2690.002706
noncoding29733C29733TCT22B.1.1.3720.001377
noncoding29733C29733TCT22B.1.1.4190.014815
noncoding29733C29733TCT22B.1.160.140.004237
noncoding29733C29733TCT22B.1.160.330.00885
noncoding29733C29733TCT22B.1.177.180.00232
noncoding29733C29733TCT22B.1.177.320.002699
noncoding29733C29733TCT22B.1.177.750.002081
noncoding29733C29733TCT22B.1.177.760.004988
noncoding29733C29733TCT22B.1.177.790.004684
noncoding29733C29733TCT22B.1.177.80.001505
noncoding29733C29733TCT22B.1.214.20.001199
noncoding29733C29733TCT22B.1.2410.001623
noncoding29733C29733TCT22B.1.3110.000549
noncoding29733C29733TCT22B.1.3240.00321
noncoding29733C29733TCT22B.1.3430.041667
noncoding29733C29733TCT22B.1.36.100.009569
noncoding29733C29733TCT22B.1.36.180.00084
noncoding29733C29733TCT22B.1.3670.001585
noncoding29733C29733TCT22B.1.370.029412
noncoding29733C29733TCT22B.1.390.007812
noncoding29733C29733TCT22B.1.4090.001563
noncoding29733C29733TCT22B.1.438.10.000215
noncoding29733C29733TCT22B.1.4800.004975
noncoding29733C29733TCT22B.1.5300.014286
noncoding29733C29733TCT22B.1.564.10.003155
noncoding29733C29733TCT22B.1.5710.019417
noncoding29733C29733TCT22B.1.6280.000705
noncoding29733C29733TCT22B.400.000729
noncoding29733C29733TCT22P.1.100.000539
noncoding29733C29733TCT22P.1.120.000968
noncoding29733C29733TCT22P.1.150.000465
noncoding29733C29733TCT11AA.60.016129
noncoding29733C29733TCT11AD.10.004115
noncoding29733C29733TCT11AY.100.00053
noncoding29733C29733TCT11AY.1010.00049
noncoding29733C29733TCT11AY.1040.001984
noncoding29733C29733TCT11AY.170.008197
noncoding29733C29733TCT11AY.29.10.000221
noncoding29733C29733TCT11AY.370.000316
noncoding29733C29733TCT11AY.380.000499
noncoding29733C29733TCT11AY.480.000465
noncoding29733C29733TCT11AY.500.000799
noncoding29733C29733TCT11AY.620.000436
noncoding29733C29733TCT11AY.640.000595
noncoding29733C29733TCT11AY.650.000533
noncoding29733C29733TCT11AY.670.000464
noncoding29733C29733TCT11AY.710.000475
noncoding29733C29733TCT11AY.730.000665
noncoding29733C29733TCT11AY.810.001992
noncoding29733C29733TCT11AY.880.000884
noncoding29733C29733TCT11AY.930.000273
noncoding29733C29733TCT11AY.940.000443
noncoding29733C29733TCT11AY.990.001049
noncoding29733C29733TCT11AZ.30.00152
noncoding29733C29733TCT11B.1.1.100.001115
noncoding29733C29733TCT11B.1.1.1150.008929
noncoding29733C29733TCT11B.1.1.1180.010204
noncoding29733C29733TCT11B.1.1.1230.017857
noncoding29733C29733TCT11B.1.1.1570.000913
noncoding29733C29733TCT11B.1.1.1980.001468
noncoding29733C29733TCT11B.1.1.2070.001182
noncoding29733C29733TCT11B.1.1.2160.00089
noncoding29733C29733TCT11B.1.1.2290.005747
noncoding29733C29733TCT11B.1.1.2430.004082
noncoding29733C29733TCT11B.1.1.2770.000759
noncoding29733C29733TCT11B.1.1.2820.011628
noncoding29733C29733TCT11B.1.1.3010.001179
noncoding29733C29733TCT11B.1.1.3110.000358
noncoding29733C29733TCT11B.1.1.3150.008475
noncoding29733C29733TCT11B.1.1.3180.000302
noncoding29733C29733TCT11B.1.1.3390.010526
noncoding29733C29733TCT11B.1.1.3710.010417
noncoding29733C29733TCT11B.1.1.3740.002375
noncoding29733C29733TCT11B.1.1.3770.001381
noncoding29733C29733TCT11B.1.1.3910.008547
noncoding29733C29733TCT11B.1.1.3970.002252
noncoding29733C29733TCT11B.1.1.4090.002833
noncoding29733C29733TCT11B.1.1.4120.007634
noncoding29733C29733TCT11B.1.1.460.004367
noncoding29733C29733TCT11B.1.1.700.000341
noncoding29733C29733TCT11B.1.1.710.006061
noncoding29733C29733TCT11B.1.1110.001175
noncoding29733C29733TCT11B.1.1260.001276
noncoding29733C29733TCT11B.1.1280.000635
noncoding29733C29733TCT11B.1.160.260.002421
noncoding29733C29733TCT11B.1.160.70.002079
noncoding29733C29733TCT11B.1.160.80.001289
noncoding29733C29733TCT11B.1.1700.00431
noncoding29733C29733TCT11B.1.177.120.000152
noncoding29733C29733TCT11B.1.177.310.011494
noncoding29733C29733TCT11B.1.177.330.001645
noncoding29733C29733TCT11B.1.177.570.000281
noncoding29733C29733TCT11B.1.177.60.000977
noncoding29733C29733TCT11B.1.177.630.002703
noncoding29733C29733TCT11B.1.177.730.000566
noncoding29733C29733TCT11B.1.177.770.000726
noncoding29733C29733TCT11B.1.177.830.001481
noncoding29733C29733TCT11B.1.177.870.000728
noncoding29733C29733TCT11B.1.1990.004132
noncoding29733C29733TCT11B.1.2010.005682
noncoding29733C29733TCT11B.1.2060.000816
noncoding29733C29733TCT11B.1.221.10.002907
noncoding29733C29733TCT11B.1.221.30.000833
noncoding29733C29733TCT11B.1.2320.000537
noncoding29733C29733TCT11B.1.2350.002519
noncoding29733C29733TCT11B.1.2390.001221
noncoding29733C29733TCT11B.1.258.170.000104
noncoding29733C29733TCT11B.1.3010.005917
noncoding29733C29733TCT11B.1.3200.001245
noncoding29733C29733TCT11B.1.3290.000608
noncoding29733C29733TCT11B.1.3330.010526
noncoding29733C29733TCT11B.1.3560.001727
noncoding29733C29733TCT11B.1.36.260.002857
noncoding29733C29733TCT11B.1.36.80.001
noncoding29733C29733TCT11B.1.3620.001541
noncoding29733C29733TCT11B.1.3750.00082
noncoding29733C29733TCT11B.1.3810.007812
noncoding29733C29733TCT11B.1.3970.004854
noncoding29733C29733TCT11B.1.3980.002976
noncoding29733C29733TCT11B.1.4010.008197
noncoding29733C29733TCT11B.1.4560.003268
noncoding29733C29733TCT11B.1.4590.004082
noncoding29733C29733TCT11B.1.4680.005714
noncoding29733C29733TCT11B.1.4990.00105
noncoding29733C29733TCT11B.1.5030.002488
noncoding29733C29733TCT11B.1.5170.000427
noncoding29733C29733TCT11B.1.5270.003704
noncoding29733C29733TCT11B.1.5520.015152
noncoding29733C29733TCT11B.1.5610.000397
noncoding29733C29733TCT11B.1.5640.000426
noncoding29733C29733TCT11B.1.5670.003333
noncoding29733C29733TCT11B.1.5760.000907
noncoding29733C29733TCT11B.1.5800.004065
noncoding29733C29733TCT11B.1.5890.007576
noncoding29733C29733TCT11B.1.5910.010638
noncoding29733C29733TCT11B.1.5990.00365
noncoding29733C29733TCT11B.1.6000.005848
noncoding29733C29733TCT11B.1.621.10.000506
noncoding29733C29733TCT11B.1.6270.00202
noncoding29733C29733TCT11B.1.6340.003425
noncoding29733C29733TCT11B.4.10.018868
noncoding29733C29733TCT11C.380.008065
noncoding29733C29733TCT11P.1.110.010204
noncoding29733C29733TCT11P.1.20.001156
noncoding29733C29733TCT11P.30.001595
noncoding29733C29733TCT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.