CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29730-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29730C29730-noncodingC-1391313913129730-29730

Details of the mutation C29730- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29730C29730-C-1391313913All0.002661
noncoding29730C29730-C-37153715B.1.5250.420392
noncoding29730C29730-C-19171917B.1.1.70.001716
noncoding29730C29730-C-17521752B.1.1.3110.627507
noncoding29730C29730-C-834834AY.380.416375
noncoding29730C29730-C-570570AY.40.000887
noncoding29730C29730-C-411411B.1.617.20.001548
noncoding29730C29730-C-362362B.1.351.20.109531
noncoding29730C29730-C-286286AY.50.005906
noncoding29730C29730-C-283283AY.390.006993
noncoding29730C29730-C-189189B.1.5260.004442
noncoding29730C29730-C-184184B.10.001685
noncoding29730C29730-C-155155AY.1030.000962
noncoding29730C29730-C-146146B.1.1770.001922
noncoding29730C29730-C-121121B.1.10.002195
noncoding29730C29730-C-115115B.1.20.001013
noncoding29730C29730-C-109109AY.1200.004052
noncoding29730C29730-C-109109B.1.4290.002565
noncoding29730C29730-C-102102P.10.001607
noncoding29730C29730-C-100100AY.250.000601
noncoding29730C29730-C-9898B.1.2210.006961
noncoding29730C29730-C-9696AY.430.000425
noncoding29730C29730-C-9696AY.730.063872
noncoding29730C29730-C-9191AY.470.002831
noncoding29730C29730-C-8484AY.420.003379
noncoding29730C29730-C-8383B.1.177.810.015714
noncoding29730C29730-C-7171B.1.2430.004941
noncoding29730C29730-C-6969AY.30.000686
noncoding29730C29730-C-6464B.1.1.5190.002541
noncoding29730C29730-C-5656B.1.1600.001747
noncoding29730C29730-C-5151AY.440.00031
noncoding29730C29730-C-4646C.160.04878
noncoding29730C29730-C-4444B.1.177.240.056995
noncoding29730C29730-C-4040P.1.160.014964
noncoding29730C29730-C-3636B.1.3510.00107
noncoding29730C29730-C-2929R.10.00261
noncoding29730C29730-C-2727B.1.2580.001797
noncoding29730C29730-C-2727B.1.3460.035387
noncoding29730C29730-C-2626AY.260.000736
noncoding29730C29730-C-2626AY.290.00041
noncoding29730C29730-C-2323AY.1000.001058
noncoding29730C29730-C-2323AY.1020.00061
noncoding29730C29730-C-2323AY.4.20.000499
noncoding29730C29730-C-2323B.1.4270.001161
noncoding29730C29730-C-2323B.1.5960.002004
noncoding29730C29730-C-2222B.1.1.3680.067901
noncoding29730C29730-C-2121B.1.3050.045161
noncoding29730C29730-C-2020B.1.2890.053191
noncoding29730C29730-C-2020B.1.5750.006068
noncoding29730C29730-C-1919AY.920.005458
noncoding29730C29730-C-1919B.1.6210.001682
noncoding29730C29730-C-1818AY.200.0007
noncoding29730C29730-C-1818B.1.1.1720.327273
noncoding29730C29730-C-1818B.1.1.2220.003672
noncoding29730C29730-C-1818B.1.1.3070.04557
noncoding29730C29730-C-1818B.1.4040.023438
noncoding29730C29730-C-1818P.1.140.00086
noncoding29730C29730-C-1717C.370.001973
noncoding29730C29730-C-1616AY.450.001947
noncoding29730C29730-C-1616AY.60.000658
noncoding29730C29730-C-1616B.1.1.2650.050473
noncoding29730C29730-C-1515AY.1190.00053
noncoding29730C29730-C-1414B.1.36.10.015964
noncoding29730C29730-C-1313AY.9.10.001088
noncoding29730C29730-C-1212B.1.1.4160.01086
noncoding29730C29730-C-1111AY.1170.00093
noncoding29730C29730-C-1111AY.1180.000689
noncoding29730C29730-C-1111AY.740.001272
noncoding29730C29730-C-1111AY.9.20.000404
noncoding29730C29730-C-1111B.1.1.2140.00061
noncoding29730C29730-C-1111B.1.1.2790.012332
noncoding29730C29730-C-1111B.1.1.330.00463
noncoding29730C29730-C-1010AY.750.00056
noncoding29730C29730-C-1010B.1.1.250.005685
noncoding29730C29730-C-1010B.1.1.370.001929
noncoding29730C29730-C-1010B.1.177.750.010406
noncoding29730C29730-C-1010P.20.001866
noncoding29730C29730-C-99AY.610.000943
noncoding29730C29730-C-99B0.00115
noncoding29730C29730-C-99B.1.160.140.019068
noncoding29730C29730-C-99B.1.177.620.010727
noncoding29730C29730-C-99B.1.3980.026786
noncoding29730C29730-C-99B.1.4160.011421
noncoding29730C29730-C-99P.1.170.001456
noncoding29730C29730-C-88AY.230.000558
noncoding29730C29730-C-88AY.46.40.001316
noncoding29730C29730-C-88AY.46.50.001587
noncoding29730C29730-C-88B.1.1.1530.008762
noncoding29730C29730-C-88B.1.1.280.00249
noncoding29730C29730-C-88B.1.360.001167
noncoding29730C29730-C-88B.1.4990.008403
noncoding29730C29730-C-88C.36.30.004538
noncoding29730C29730-C-77AY.1140.001618
noncoding29730C29730-C-77AY.46.60.000505
noncoding29730C29730-C-77AY.75.10.001262
noncoding29730C29730-C-77AY.850.00299
noncoding29730C29730-C-77AY.99.20.000645
noncoding29730C29730-C-77B.1.1.390.003568
noncoding29730C29730-C-77B.1.110.30.005029
noncoding29730C29730-C-77B.1.160.330.030973
noncoding29730C29730-C-77B.1.36.290.003621
noncoding29730C29730-C-77B.1.6230.003755
noncoding29730C29730-C-66A.250.109091
noncoding29730C29730-C-66AD.20.001314
noncoding29730C29730-C-66AY.130.000966
noncoding29730C29730-C-66AY.140.000528
noncoding29730C29730-C-66AY.340.000582
noncoding29730C29730-C-66B.1.1.1890.009077
noncoding29730C29730-C-66B.1.1.3160.00555
noncoding29730C29730-C-66B.1.2400.001293
noncoding29730C29730-C-66B.1.4000.002574
noncoding29730C29730-C-66B.1.4480.015748
noncoding29730C29730-C-66B.1.5950.001566
noncoding29730C29730-C-66B.1.595.10.035088
noncoding29730C29730-C-66B.1.6370.000438
noncoding29730C29730-C-66D.20.00045
noncoding29730C29730-C-66N.40.025532
noncoding29730C29730-C-55A0.001935
noncoding29730C29730-C-55A.10.001409
noncoding29730C29730-C-55AY.460.00052
noncoding29730C29730-C-55AY.540.000477
noncoding29730C29730-C-55AY.98.10.000242
noncoding29730C29730-C-55B.1.1.3170.002058
noncoding29730C29730-C-55B.1.1.3180.001509
noncoding29730C29730-C-55B.1.177.70.000824
noncoding29730C29730-C-55B.1.3890.00501
noncoding29730C29730-C-55B.1.4080.01845
noncoding29730C29730-C-55Q.10.000632
noncoding29730C29730-C-44AY.300.001583
noncoding29730C29730-C-44AY.330.000267
noncoding29730C29730-C-44AY.360.000593
noncoding29730C29730-C-44AY.650.002132
noncoding29730C29730-C-44AY.90.00027
noncoding29730C29730-C-44B.1.1.3060.001754
noncoding29730C29730-C-44B.1.1.4640.005891
noncoding29730C29730-C-44B.1.1.700.001364
noncoding29730C29730-C-44B.1.160.280.011696
noncoding29730C29730-C-44B.1.177.40.000844
noncoding29730C29730-C-44B.1.177.600.000874
noncoding29730C29730-C-44B.1.2340.000528
noncoding29730C29730-C-44B.1.258.170.000416
noncoding29730C29730-C-44B.1.5820.001963
noncoding29730C29730-C-44B.1.5880.00364
noncoding29730C29730-C-44B.1.6090.001918
noncoding29730C29730-C-44B.400.001457
noncoding29730C29730-C-44P.1.10.001271
noncoding29730C29730-C-44P.1.150.000929
noncoding29730C29730-C-33AY.1090.002219
noncoding29730C29730-C-33AY.1100.000338
noncoding29730C29730-C-33AY.120.000948
noncoding29730C29730-C-33AY.620.001307
noncoding29730C29730-C-33AY.70.000588
noncoding29730C29730-C-33B.1.1.1920.006928
noncoding29730C29730-C-33B.1.1.2280.009146
noncoding29730C29730-C-33B.1.1.2360.02069
noncoding29730C29730-C-33B.1.1.3370.010791
noncoding29730C29730-C-33B.1.1.3970.006757
noncoding29730C29730-C-33B.1.1.4280.028302
noncoding29730C29730-C-33B.1.1.460.0131
noncoding29730C29730-C-33B.1.1.630.001157
noncoding29730C29730-C-33B.1.1450.157895
noncoding29730C29730-C-33B.1.177.180.00348
noncoding29730C29730-C-33B.1.36.180.001261
noncoding29730C29730-C-33B.1.36.310.005254
noncoding29730C29730-C-33B.1.3960.002117
noncoding29730C29730-C-33B.1.3990.005803
noncoding29730C29730-C-33B.1.416.10.004687
noncoding29730C29730-C-33B.1.440.025
noncoding29730C29730-C-33B.1.466.20.001174
noncoding29730C29730-C-33B.1.5170.001281
noncoding29730C29730-C-33B.1.6280.001057
noncoding29730C29730-C-33Q.80.000495
noncoding29730C29730-C-22AY.1060.00067
noncoding29730C29730-C-22AY.120.2.10.000997
noncoding29730C29730-C-22AY.190.002281
noncoding29730C29730-C-22AY.3.10.000171
noncoding29730C29730-C-22AY.350.000466
noncoding29730C29730-C-22AY.39.10.000079
noncoding29730C29730-C-22AY.400.001929
noncoding29730C29730-C-22AY.46.30.001867
noncoding29730C29730-C-22AY.5.30.000675
noncoding29730C29730-C-22AY.5.40.000553
noncoding29730C29730-C-22AY.510.001818
noncoding29730C29730-C-22AY.560.00321
noncoding29730C29730-C-22AY.590.001059
noncoding29730C29730-C-22AY.840.000875
noncoding29730C29730-C-22AY.950.001522
noncoding29730C29730-C-22B.1.1.10.000653
noncoding29730C29730-C-22B.1.1.1700.002494
noncoding29730C29730-C-22B.1.1.1940.009901
noncoding29730C29730-C-22B.1.1.2770.001517
noncoding29730C29730-C-22B.1.1.2840.000215
noncoding29730C29730-C-22B.1.1.2940.002532
noncoding29730C29730-C-22B.1.1.2980.001724
noncoding29730C29730-C-22B.1.1.3050.007722
noncoding29730C29730-C-22B.1.1.3480.001592
noncoding29730C29730-C-22B.1.1.3540.008772
noncoding29730C29730-C-22B.1.1.3690.000892
noncoding29730C29730-C-22B.1.1.4340.000697
noncoding29730C29730-C-22B.1.1.5280.009615
noncoding29730C29730-C-22B.1.1110.00235
noncoding29730C29730-C-22B.1.160.320.008584
noncoding29730C29730-C-22B.1.177.200.003035
noncoding29730C29730-C-22B.1.177.320.002699
noncoding29730C29730-C-22B.1.177.500.00939
noncoding29730C29730-C-22B.1.177.870.001456
noncoding29730C29730-C-22B.1.2060.001631
noncoding29730C29730-C-22B.1.230.012121
noncoding29730C29730-C-22B.1.2980.004228
noncoding29730C29730-C-22B.1.36.170.000988
noncoding29730C29730-C-22B.1.36.80.002
noncoding29730C29730-C-22B.1.3910.002255
noncoding29730C29730-C-22B.1.4360.002058
noncoding29730C29730-C-22B.1.4410.019231
noncoding29730C29730-C-22B.1.5090.001732
noncoding29730C29730-C-22B.1.5610.000794
noncoding29730C29730-C-22B.1.5680.002222
noncoding29730C29730-C-22B.1.5760.001813
noncoding29730C29730-C-22B.1.617.10.000258
noncoding29730C29730-C-22B.1.6270.00404
noncoding29730C29730-C-22B.390.004662
noncoding29730C29730-C-22B.40.004415
noncoding29730C29730-C-22B.450.007663
noncoding29730C29730-C-22C.380.016129
noncoding29730C29730-C-22P.1.100.000539
noncoding29730C29730-C-22P.1.120.000968
noncoding29730C29730-C-22P.1.130.001797
noncoding29730C29730-C-22P.1.20.002312
noncoding29730C29730-C-22P.70.008734
noncoding29730C29730-C-22Q.40.00091
noncoding29730C29730-C-11A.2.20.001689
noncoding29730C29730-C-11A.2.30.004739
noncoding29730C29730-C-11A.2.50.000499
noncoding29730C29730-C-11A.23.10.000704
noncoding29730C29730-C-11AK.20.045455
noncoding29730C29730-C-11AU.10.001266
noncoding29730C29730-C-11AY.100.00053
noncoding29730C29730-C-11AY.1050.000643
noncoding29730C29730-C-11AY.1080.001103
noncoding29730C29730-C-11AY.1110.000183
noncoding29730C29730-C-11AY.120.10.000321
noncoding29730C29730-C-11AY.160.00038
noncoding29730C29730-C-11AY.270.000065
noncoding29730C29730-C-11AY.29.10.000221
noncoding29730C29730-C-11AY.4.2.10.000149
noncoding29730C29730-C-11AY.480.000465
noncoding29730C29730-C-11AY.520.000814
noncoding29730C29730-C-11AY.550.000917
noncoding29730C29730-C-11AY.660.00107
noncoding29730C29730-C-11AY.810.001992
noncoding29730C29730-C-11AY.870.000833
noncoding29730C29730-C-11AY.910.00073
noncoding29730C29730-C-11AY.940.000443
noncoding29730C29730-C-11AZ.10.000867
noncoding29730C29730-C-11B.1.1.100.001115
noncoding29730C29730-C-11B.1.1.1740.003378
noncoding29730C29730-C-11B.1.1.1960.005714
noncoding29730C29730-C-11B.1.1.1970.037037
noncoding29730C29730-C-11B.1.1.1980.001468
noncoding29730C29730-C-11B.1.1.2160.00089
noncoding29730C29730-C-11B.1.1.2180.007692
noncoding29730C29730-C-11B.1.1.2290.005747
noncoding29730C29730-C-11B.1.1.2300.009174
noncoding29730C29730-C-11B.1.1.2610.008621
noncoding29730C29730-C-11B.1.1.2860.002899
noncoding29730C29730-C-11B.1.1.3390.010526
noncoding29730C29730-C-11B.1.1.3720.000689
noncoding29730C29730-C-11B.1.1.3890.006061
noncoding29730C29730-C-11B.1.1.4190.007407
noncoding29730C29730-C-11B.1.1.430.014925
noncoding29730C29730-C-11B.1.1.4320.001266
noncoding29730C29730-C-11B.1.1.470.005348
noncoding29730C29730-C-11B.1.1.500.000679
noncoding29730C29730-C-11B.1.1.5170.006803
noncoding29730C29730-C-11B.1.1.710.006061
noncoding29730C29730-C-11B.1.177.440.000519
noncoding29730C29730-C-11B.1.177.530.002392
noncoding29730C29730-C-11B.1.177.570.000281
noncoding29730C29730-C-11B.1.177.60.000977
noncoding29730C29730-C-11B.1.177.650.000665
noncoding29730C29730-C-11B.1.177.860.000183
noncoding29730C29730-C-11B.1.1800.05
noncoding29730C29730-C-11B.1.1920.009259
noncoding29730C29730-C-11B.1.2100.002132
noncoding29730C29730-C-11B.1.214.20.0006
noncoding29730C29730-C-11B.1.2220.001692
noncoding29730C29730-C-11B.1.2410.000812
noncoding29730C29730-C-11B.1.258.160.001637
noncoding29730C29730-C-11B.1.2910.019231
noncoding29730C29730-C-11B.1.3110.000275
noncoding29730C29730-C-11B.1.3300.028571
noncoding29730C29730-C-11B.1.3370.005587
noncoding29730C29730-C-11B.1.3490.000715
noncoding29730C29730-C-11B.1.351.30.000876
noncoding29730C29730-C-11B.1.36.100.004785
noncoding29730C29730-C-11B.1.36.190.009259
noncoding29730C29730-C-11B.1.3620.001541
noncoding29730C29730-C-11B.1.3690.000285
noncoding29730C29730-C-11B.1.4220.000812
noncoding29730C29730-C-11B.1.4430.004673
noncoding29730C29730-C-11B.1.4930.025641
noncoding29730C29730-C-11B.1.5510.00129
noncoding29730C29730-C-11B.1.564.10.001577
noncoding29730C29730-C-11B.1.5970.00463
noncoding29730C29730-C-11B.1.6000.005848
noncoding29730C29730-C-11B.1.617.30.002985
noncoding29730C29730-C-11B.1.6190.000871
noncoding29730C29730-C-11B.1.6200.000946
noncoding29730C29730-C-11B.1.6330.041667
noncoding29730C29730-C-11B.30.000831
noncoding29730C29730-C-11B.3.10.001658
noncoding29730C29730-C-11B.310.003731
noncoding29730C29730-C-11B.550.00295
noncoding29730C29730-C-11B.60.00091
noncoding29730C29730-C-11C.360.000911
noncoding29730C29730-C-11M.10.023256
noncoding29730C29730-C-11N.50.001767
noncoding29730C29730-C-11P.1.40.000977
noncoding29730C29730-C-11P.1.70.000319
noncoding29730C29730-C-11P.60.003145
noncoding29730C29730-C-11Q.20.000613
noncoding29730C29730-C-11Q.30.000145
noncoding29730C29730-C-11W.10.008696
noncoding29730C29730-C-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.