CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29721T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29721C29721TnoncodingCT49594959129721-29721

Details of the mutation C29721T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29721C29721TCT49594959All0.000948
noncoding29721C29721TCT868868B.1.617.20.003268
noncoding29721C29721TCT612612B.1.1.70.000548
noncoding29721C29721TCT598598AY.1020.015855
noncoding29721C29721TCT402402B.1.1.4480.817073
noncoding29721C29721TCT279279B.1.1.540.8429
noncoding29721C29721TCT263263B.1.20.002316
noncoding29721C29721TCT249249AY.40.000388
noncoding29721C29721TCT132132AY.250.000794
noncoding29721C29721TCT116116AY.440.000706
noncoding29721C29721TCT115115B.1.5260.002703
noncoding29721C29721TCT8787AY.4.10.064159
noncoding29721C29721TCT8080AY.430.000354
noncoding29721C29721TCT7373AY.1030.000453
noncoding29721C29721TCT6262B.10.000568
noncoding29721C29721TCT5151B.1.10.000925
noncoding29721C29721TCT4343B.1.1770.000566
noncoding29721C29721TCT4040B.1.2180.206186
noncoding29721C29721TCT3838AY.390.000939
noncoding29721C29721TCT3333AY.260.000934
noncoding29721C29721TCT3232B.1.2430.002227
noncoding29721C29721TCT3131AY.1110.005678
noncoding29721C29721TCT2626AY.50.000537
noncoding29721C29721TCT2525B.1.1600.00078
noncoding29721C29721TCT2121AY.330.001402
noncoding29721C29721TCT2121AY.460.002186
noncoding29721C29721TCT2020B.1.6370.001461
noncoding29721C29721TCT1919AY.450.002312
noncoding29721C29721TCT1818AY.670.008357
noncoding29721C29721TCT1717A.2.5.10.081731
noncoding29721C29721TCT1717AY.1000.000782
noncoding29721C29721TCT1515AY.200.000583
noncoding29721C29721TCT1515AY.480.006977
noncoding29721C29721TCT1414AY.30.000139
noncoding29721C29721TCT1414AY.9.20.000514
noncoding29721C29721TCT1414AY.98.10.000678
noncoding29721C29721TCT1414B.1.3510.000416
noncoding29721C29721TCT1414D.20.001051
noncoding29721C29721TCT1212AY.1190.000424
noncoding29721C29721TCT1212AY.980.000948
noncoding29721C29721TCT1111AY.4.50.001182
noncoding29721C29721TCT1010AY.1140.002311
noncoding29721C29721TCT1010AY.360.001482
noncoding29721C29721TCT99AY.410.002646
noncoding29721C29721TCT99P.10.000142
noncoding29721C29721TCT88AY.4.20.000174
noncoding29721C29721TCT88B.1.1.5190.000318
noncoding29721C29721TCT77AY.1180.000439
noncoding29721C29721TCT77AY.1200.00026
noncoding29721C29721TCT77AY.46.60.000505
noncoding29721C29721TCT77AY.470.000218
noncoding29721C29721TCT77B.1.360.001021
noncoding29721C29721TCT77B.1.5960.00061
noncoding29721C29721TCT77C.36.3.10.019022
noncoding29721C29721TCT66AY.1010.002943
noncoding29721C29721TCT66AY.1040.011905
noncoding29721C29721TCT66AY.1170.000507
noncoding29721C29721TCT66AY.230.000418
noncoding29721C29721TCT66AY.420.000241
noncoding29721C29721TCT66AY.46.10.00616
noncoding29721C29721TCT66AY.610.000629
noncoding29721C29721TCT66B.1.1.330.002525
noncoding29721C29721TCT55AY.1210.000677
noncoding29721C29721TCT55AY.290.000079
noncoding29721C29721TCT55AY.4.2.10.000745
noncoding29721C29721TCT55AY.46.40.000823
noncoding29721C29721TCT55AY.750.00028
noncoding29721C29721TCT55B.1.177.570.001405
noncoding29721C29721TCT55B.1.2100.010661
noncoding29721C29721TCT55B.1.2340.00066
noncoding29721C29721TCT55B.1.4270.000252
noncoding29721C29721TCT55B.1.4290.000118
noncoding29721C29721TCT44AY.270.000259
noncoding29721C29721TCT44AY.34.10.00204
noncoding29721C29721TCT44AY.99.20.000369
noncoding29721C29721TCT44AZ.20.003284
noncoding29721C29721TCT44B.1.1.460.017467
noncoding29721C29721TCT44B.1.351.30.003506
noncoding29721C29721TCT44B.1.617.10.000516
noncoding29721C29721TCT44C.350.003096
noncoding29721C29721TCT33AD.20.000657
noncoding29721C29721TCT33AY.1100.000338
noncoding29721C29721TCT33AY.1160.00086
noncoding29721C29721TCT33AY.29.10.000662
noncoding29721C29721TCT33AY.3.10.000256
noncoding29721C29721TCT33AY.740.000347
noncoding29721C29721TCT33AY.870.002498
noncoding29721C29721TCT33AY.910.002191
noncoding29721C29721TCT33AY.930.000819
noncoding29721C29721TCT33B.1.1.10.00098
noncoding29721C29721TCT33B.1.1.1660.1
noncoding29721C29721TCT33B.1.1.1960.017143
noncoding29721C29721TCT33B.1.1.2090.026786
noncoding29721C29721TCT33B.1.1.280.000934
noncoding29721C29721TCT33B.1.1.4640.004418
noncoding29721C29721TCT33B.1.1.520.036585
noncoding29721C29721TCT33B.1.177.820.001432
noncoding29721C29721TCT33B.1.2580.0002
noncoding29721C29721TCT33B.1.36.80.003
noncoding29721C29721TCT33B.1.5090.002597
noncoding29721C29721TCT33B.1.5820.001472
noncoding29721C29721TCT33B.1.6210.000266
noncoding29721C29721TCT33B.310.011194
noncoding29721C29721TCT33C.370.000348
noncoding29721C29721TCT220.111111
noncoding29721C29721TCT22AU.10.002532
noncoding29721C29721TCT22AY.10.000791
noncoding29721C29721TCT22AY.1050.001286
noncoding29721C29721TCT22AY.1060.00067
noncoding29721C29721TCT22AY.340.000194
noncoding29721C29721TCT22AY.370.000632
noncoding29721C29721TCT22AY.46.20.001271
noncoding29721C29721TCT22AY.46.50.000397
noncoding29721C29721TCT22AY.510.001818
noncoding29721C29721TCT22AY.540.000191
noncoding29721C29721TCT22AY.60.000082
noncoding29721C29721TCT22AY.640.00119
noncoding29721C29721TCT22AY.75.10.000361
noncoding29721C29721TCT22AY.770.002255
noncoding29721C29721TCT22AY.90.000135
noncoding29721C29721TCT22B.1.1.1210.004854
noncoding29721C29721TCT22B.1.1.2840.000215
noncoding29721C29721TCT22B.1.1.3060.000877
noncoding29721C29721TCT22B.1.1.3220.017544
noncoding29721C29721TCT22B.1.1.4090.005666
noncoding29721C29721TCT22B.1.1.4120.015267
noncoding29721C29721TCT22B.1.1.4870.011173
noncoding29721C29721TCT22B.1.2210.000142
noncoding29721C29721TCT22B.1.36.20.021505
noncoding29721C29721TCT22B.1.36.240.012346
noncoding29721C29721TCT22B.1.3800.013245
noncoding29721C29721TCT22B.1.438.10.000215
noncoding29721C29721TCT22B.1.4700.002809
noncoding29721C29721TCT22B.1.6090.000959
noncoding29721C29721TCT22B.1.6280.000705
noncoding29721C29721TCT22C.10.004785
noncoding29721C29721TCT22P.1.140.000096
noncoding29721C29721TCT22R.10.00018
noncoding29721C29721TCT11A.23.10.000704
noncoding29721C29721TCT11AY.120.10.000321
noncoding29721C29721TCT11AY.120.2.10.000498
noncoding29721C29721TCT11AY.140.000088
noncoding29721C29721TCT11AY.240.000431
noncoding29721C29721TCT11AY.320.000532
noncoding29721C29721TCT11AY.380.000499
noncoding29721C29721TCT11AY.39.10.00004
noncoding29721C29721TCT11AY.4.30.000842
noncoding29721C29721TCT11AY.400.000964
noncoding29721C29721TCT11AY.5.30.000337
noncoding29721C29721TCT11AY.530.000288
noncoding29721C29721TCT11AY.690.000187
noncoding29721C29721TCT11AY.70.000196
noncoding29721C29721TCT11AY.720.001361
noncoding29721C29721TCT11AY.840.000437
noncoding29721C29721TCT11AZ.40.003356
noncoding29721C29721TCT11B.1.1.1410.002012
noncoding29721C29721TCT11B.1.1.2140.000055
noncoding29721C29721TCT11B.1.1.2160.00089
noncoding29721C29721TCT11B.1.1.2190.005
noncoding29721C29721TCT11B.1.1.2220.000204
noncoding29721C29721TCT11B.1.1.270.00565
noncoding29721C29721TCT11B.1.1.2730.006757
noncoding29721C29721TCT11B.1.1.3040.002809
noncoding29721C29721TCT11B.1.1.3110.000358
noncoding29721C29721TCT11B.1.1.3170.000412
noncoding29721C29721TCT11B.1.1.3180.000302
noncoding29721C29721TCT11B.1.1.3330.001076
noncoding29721C29721TCT11B.1.1.370.000193
noncoding29721C29721TCT11B.1.1.3720.000689
noncoding29721C29721TCT11B.1.1.5230.001563
noncoding29721C29721TCT11B.1.1.5280.004808
noncoding29721C29721TCT11B.1.1.530.013699
noncoding29721C29721TCT11B.1.1.570.011494
noncoding29721C29721TCT11B.1.1.630.000386
noncoding29721C29721TCT11B.1.1.670.004566
noncoding29721C29721TCT11B.1.1.700.000341
noncoding29721C29721TCT11B.1.110.30.000718
noncoding29721C29721TCT11B.1.120.008
noncoding29721C29721TCT11B.1.1280.000635
noncoding29721C29721TCT11B.1.1570.002985
noncoding29721C29721TCT11B.1.177.650.000665
noncoding29721C29721TCT11B.1.177.730.000566
noncoding29721C29721TCT11B.1.177.810.000189
noncoding29721C29721TCT11B.1.177.870.000728
noncoding29721C29721TCT11B.1.2060.000816
noncoding29721C29721TCT11B.1.2400.000216
noncoding29721C29721TCT11B.1.2980.002114
noncoding29721C29721TCT11B.1.3110.000275
noncoding29721C29721TCT11B.1.36.170.000494
noncoding29721C29721TCT11B.1.36.290.000517
noncoding29721C29721TCT11B.1.5490.007194
noncoding29721C29721TCT11B.1.5540.004405
noncoding29721C29721TCT11B.1.5640.000426
noncoding29721C29721TCT11B.1.5760.000907
noncoding29721C29721TCT11B.1.5970.00463
noncoding29721C29721TCT11B.1.6340.003425
noncoding29721C29721TCT11B.1.760.011364
noncoding29721C29721TCT11B.290.003509
noncoding29721C29721TCT11B.30.000831
noncoding29721C29721TCT11B.60.00091
noncoding29721C29721TCT11C.60.037037

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.