CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29546T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29546C29546TnoncodingCT44124412129546-29546

Details of the mutation C29546T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29546C29546TCT44124412All0.000844
noncoding29546C29546TCT818818B.1.1.70.000732
noncoding29546C29546TCT660660AY.40.001027
noncoding29546C29546TCT224224D.20.016809
noncoding29546C29546TCT199199B.1.20.001752
noncoding29546C29546TCT176176AY.250.001059
noncoding29546C29546TCT166166B.1.617.20.000625
noncoding29546C29546TCT141141B.1.5960.012287
noncoding29546C29546TCT137137AY.30.001363
noncoding29546C29546TCT127127AY.290.002003
noncoding29546C29546TCT113113AY.200.004392
noncoding29546C29546TCT108108B.10.000989
noncoding29546C29546TCT9090AY.1030.000559
noncoding29546C29546TCT8080B.1.1770.001053
noncoding29546C29546TCT7575AY.440.000457
noncoding29546C29546TCT6262P.10.000977
noncoding29546C29546TCT5757B.1.1470.043084
noncoding29546C29546TCT5252AY.50.001074
noncoding29546C29546TCT5252B.1.177.600.011359
noncoding29546C29546TCT5151AY.430.000226
noncoding29546C29546TCT3232B.1.10.000581
noncoding29546C29546TCT2929B.1.4270.001464
noncoding29546C29546TCT2626AY.120.10.008347
noncoding29546C29546TCT2626B.1.1.1530.028478
noncoding29546C29546TCT2525B.1.177.120.003792
noncoding29546C29546TCT2424AY.4.20.000521
noncoding29546C29546TCT2323AY.420.000925
noncoding29546C29546TCT2323B.1.3510.000684
noncoding29546C29546TCT2222AY.330.001469
noncoding29546C29546TCT2222B.1.4290.000518
noncoding29546C29546TCT2121AY.1020.000557
noncoding29546C29546TCT2121B.1.2580.001397
noncoding29546C29546TCT2020AY.450.002434
noncoding29546C29546TCT1919AY.610.001991
noncoding29546C29546TCT1818AY.390.000445
noncoding29546C29546TCT1818B.1.1200.138462
noncoding29546C29546TCT1717AY.46.40.002797
noncoding29546C29546TCT1717AY.99.20.001567
noncoding29546C29546TCT1616AY.260.000453
noncoding29546C29546TCT1616AY.46.10.016427
noncoding29546C29546TCT1616B.1.1.2160.014248
noncoding29546C29546TCT1515P.1.140.000717
noncoding29546C29546TCT1414AY.46.60.001011
noncoding29546C29546TCT1414AY.840.006124
noncoding29546C29546TCT1313B.1.564.10.020505
noncoding29546C29546TCT1212B.1.1.2220.002448
noncoding29546C29546TCT1212B.1.5260.000282
noncoding29546C29546TCT1111AY.470.000342
noncoding29546C29546TCT1111B.1.1.5190.000437
noncoding29546C29546TCT1111B.1.2430.000765
noncoding29546C29546TCT99AY.680.002464
noncoding29546C29546TCT99B.1.3620.013867
noncoding29546C29546TCT99B.1.6210.000797
noncoding29546C29546TCT88B.1.1.4340.002788
noncoding29546C29546TCT88B.1.177.210.000612
noncoding29546C29546TCT88B.1.177.70.001319
noncoding29546C29546TCT88C.370.000929
noncoding29546C29546TCT77AY.1140.001618
noncoding29546C29546TCT77AY.1180.000439
noncoding29546C29546TCT77AY.230.000488
noncoding29546C29546TCT77AY.3.10.000597
noncoding29546C29546TCT77AY.360.001037
noncoding29546C29546TCT77AY.98.10.000339
noncoding29546C29546TCT77B.1.1.280.002179
noncoding29546C29546TCT77B.1.177.860.001284
noncoding29546C29546TCT77B.1.2340.000924
noncoding29546C29546TCT77P.1.60.013619
noncoding29546C29546TCT66AY.540.000572
noncoding29546C29546TCT66AY.920.001724
noncoding29546C29546TCT66B.1.1.1760.002636
noncoding29546C29546TCT66B.1.1.2140.000333
noncoding29546C29546TCT66B.1.1.3180.001811
noncoding29546C29546TCT66B.1.5250.000679
noncoding29546C29546TCT66B.400.002186
noncoding29546C29546TCT66R.10.00054
noncoding29546C29546TCT55AY.1170.000423
noncoding29546C29546TCT55AY.1200.000186
noncoding29546C29546TCT55B.1.177.60.004883
noncoding29546C29546TCT55B.1.2410.004058
noncoding29546C29546TCT55B.1.360.00073
noncoding29546C29546TCT55P.20.000933
noncoding29546C29546TCT44AY.10.001583
noncoding29546C29546TCT44AY.1000.000184
noncoding29546C29546TCT44AY.320.00213
noncoding29546C29546TCT44AY.60.000165
noncoding29546C29546TCT44AY.90.00027
noncoding29546C29546TCT44B0.000511
noncoding29546C29546TCT44B.1.1.1410.008048
noncoding29546C29546TCT44B.1.1.1890.006051
noncoding29546C29546TCT44B.1.1.2610.034483
noncoding29546C29546TCT44B.1.1.4160.00362
noncoding29546C29546TCT44B.1.1600.000125
noncoding29546C29546TCT44B.1.160.160.003717
noncoding29546C29546TCT44B.1.2400.000862
noncoding29546C29546TCT44B.1.36.170.001976
noncoding29546C29546TCT44B.1.6370.000292
noncoding29546C29546TCT44Q.10.000505
noncoding29546C29546TCT33AY.1060.001005
noncoding29546C29546TCT33AY.140.000264
noncoding29546C29546TCT33AY.270.000194
noncoding29546C29546TCT33AY.280.005671
noncoding29546C29546TCT33AY.4.2.10.000447
noncoding29546C29546TCT33AY.4.50.000322
noncoding29546C29546TCT33AY.9.20.00011
noncoding29546C29546TCT33B.1.1.3060.001315
noncoding29546C29546TCT33B.1.1.630.001157
noncoding29546C29546TCT33B.1.160.70.006237
noncoding29546C29546TCT33B.1.4040.003906
noncoding29546C29546TCT33B.60.00273
noncoding29546C29546TCT33C.180.007772
noncoding29546C29546TCT33Q.80.000495
noncoding29546C29546TCT22AD.20.000438
noncoding29546C29546TCT22AY.1100.000225
noncoding29546C29546TCT22AY.130.000322
noncoding29546C29546TCT22AY.16.10.00094
noncoding29546C29546TCT22AY.400.001929
noncoding29546C29546TCT22AY.46.50.000397
noncoding29546C29546TCT22AY.5.30.000675
noncoding29546C29546TCT22AY.550.001835
noncoding29546C29546TCT22AY.750.000112
noncoding29546C29546TCT22AY.870.001665
noncoding29546C29546TCT22B.1.1.250.001137
noncoding29546C29546TCT22B.1.1.2940.002532
noncoding29546C29546TCT22B.1.1.500.001358
noncoding29546C29546TCT22B.1.1120.010363
noncoding29546C29546TCT22B.1.177.200.003035
noncoding29546C29546TCT22B.1.177.40.000422
noncoding29546C29546TCT22B.1.177.750.002081
noncoding29546C29546TCT22B.1.1890.008584
noncoding29546C29546TCT22B.1.2210.000142
noncoding29546C29546TCT22B.1.258.120.015748
noncoding29546C29546TCT22B.1.3110.000549
noncoding29546C29546TCT22B.1.3490.00143
noncoding29546C29546TCT22B.1.36.10.002281
noncoding29546C29546TCT22B.1.438.10.000215
noncoding29546C29546TCT22B.1.5610.000794
noncoding29546C29546TCT22B.1.621.10.001012
noncoding29546C29546TCT22B.1.930.001867
noncoding29546C29546TCT22P.1.150.000465
noncoding29546C29546TCT11A.2.50.000499
noncoding29546C29546TCT11A.210.00277
noncoding29546C29546TCT11A.290.005319
noncoding29546C29546TCT11A.30.002096
noncoding29546C29546TCT11AY.1080.001103
noncoding29546C29546TCT11AY.1090.00074
noncoding29546C29546TCT11AY.1130.000142
noncoding29546C29546TCT11AY.1160.000287
noncoding29546C29546TCT11AY.116.10.000311
noncoding29546C29546TCT11AY.1210.000135
noncoding29546C29546TCT11AY.240.000431
noncoding29546C29546TCT11AY.300.000396
noncoding29546C29546TCT11AY.370.000316
noncoding29546C29546TCT11AY.39.10.00004
noncoding29546C29546TCT11AY.560.001605
noncoding29546C29546TCT11AY.620.000436
noncoding29546C29546TCT11AY.7.10.000113
noncoding29546C29546TCT11AY.710.000475
noncoding29546C29546TCT11AY.740.000116
noncoding29546C29546TCT11AY.75.10.00018
noncoding29546C29546TCT11AY.9.10.000084
noncoding29546C29546TCT11AY.910.00073
noncoding29546C29546TCT11AZ.30.00152
noncoding29546C29546TCT11B.1.1.10.000327
noncoding29546C29546TCT11B.1.1.100.001115
noncoding29546C29546TCT11B.1.1.1610.003534
noncoding29546C29546TCT11B.1.1.1630.007634
noncoding29546C29546TCT11B.1.1.1920.002309
noncoding29546C29546TCT11B.1.1.2390.032258
noncoding29546C29546TCT11B.1.1.2690.001353
noncoding29546C29546TCT11B.1.1.2770.000759
noncoding29546C29546TCT11B.1.1.2910.000742
noncoding29546C29546TCT11B.1.1.3020.002075
noncoding29546C29546TCT11B.1.1.3120.001912
noncoding29546C29546TCT11B.1.1.3160.000925
noncoding29546C29546TCT11B.1.1.330.000421
noncoding29546C29546TCT11B.1.1.340.013158
noncoding29546C29546TCT11B.1.1.3690.000446
noncoding29546C29546TCT11B.1.1.3740.002375
noncoding29546C29546TCT11B.1.1040.00369
noncoding29546C29546TCT11B.1.120.008
noncoding29546C29546TCT11B.1.1390.000733
noncoding29546C29546TCT11B.1.1630.02439
noncoding29546C29546TCT11B.1.177.100.000878
noncoding29546C29546TCT11B.1.177.190.001431
noncoding29546C29546TCT11B.1.177.570.000281
noncoding29546C29546TCT11B.1.177.810.000189
noncoding29546C29546TCT11B.1.2220.001692
noncoding29546C29546TCT11B.1.2360.002053
noncoding29546C29546TCT11B.1.2390.001221
noncoding29546C29546TCT11B.1.243.10.022222
noncoding29546C29546TCT11B.1.258.170.000104
noncoding29546C29546TCT11B.1.3290.000608
noncoding29546C29546TCT11B.1.351.20.000303
noncoding29546C29546TCT11B.1.36.310.001751
noncoding29546C29546TCT11B.1.362.20.004717
noncoding29546C29546TCT11B.1.3690.000285
noncoding29546C29546TCT11B.1.370.014706
noncoding29546C29546TCT11B.1.3710.001122
noncoding29546C29546TCT11B.1.3800.006623
noncoding29546C29546TCT11B.1.3890.001002
noncoding29546C29546TCT11B.1.4000.000429
noncoding29546C29546TCT11B.1.4430.004673
noncoding29546C29546TCT11B.1.466.20.000391
noncoding29546C29546TCT11B.1.4740.001901
noncoding29546C29546TCT11B.1.4970.000315
noncoding29546C29546TCT11B.1.5170.000427
noncoding29546C29546TCT11B.1.5210.004975
noncoding29546C29546TCT11B.1.5270.003704
noncoding29546C29546TCT11B.1.5330.009615
noncoding29546C29546TCT11B.1.5510.00129
noncoding29546C29546TCT11B.1.5540.004405
noncoding29546C29546TCT11B.1.5640.000426
noncoding29546C29546TCT11B.1.5650.00081
noncoding29546C29546TCT11B.1.5950.000261
noncoding29546C29546TCT11B.1.5980.016949
noncoding29546C29546TCT11B.1.6000.005848
noncoding29546C29546TCT11B.1.617.10.000129
noncoding29546C29546TCT11B.1.6270.00202
noncoding29546C29546TCT11B.1.6280.000352
noncoding29546C29546TCT11B.1.6340.003425
noncoding29546C29546TCT11B.4.50.011905
noncoding29546C29546TCT11B.6.60.000889
noncoding29546C29546TCT11C.300.001727
noncoding29546C29546TCT11D.30.005917
noncoding29546C29546TCT11N.50.001767
noncoding29546C29546TCT11P.1.120.000484
noncoding29546C29546TCT11P.1.40.000977
noncoding29546C29546TCT11P.1.70.000319
noncoding29546C29546TCT11P.30.001595
noncoding29546C29546TCT11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.