CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29541T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29541C29541TnoncodingCT1109211092129541-29541

Details of the mutation C29541T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29541C29541TCT1109211092All0.002121
noncoding29541C29541TCT17641764AY.370.557522
noncoding29541C29541TCT16301630B.1.1.70.001459
noncoding29541C29541TCT14801480B.1.20.013032
noncoding29541C29541TCT700700B.1.617.20.002636
noncoding29541C29541TCT697697AY.40.001085
noncoding29541C29541TCT696696AY.250.004186
noncoding29541C29541TCT251251AY.440.001528
noncoding29541C29541TCT213213B.1.1770.002805
noncoding29541C29541TCT205205AY.1030.001273
noncoding29541C29541TCT177177B.10.001621
noncoding29541C29541TCT157157AY.30.001562
noncoding29541C29541TCT150150AY.430.000665
noncoding29541C29541TCT146146B.1.2210.010371
noncoding29541C29541TCT145145P.20.027062
noncoding29541C29541TCT138138B.1.1600.004304
noncoding29541C29541TCT108108B.1.10.001959
noncoding29541C29541TCT8181AY.1020.002148
noncoding29541C29541TCT8181B.1.2430.005636
noncoding29541C29541TCT7575AY.50.001549
noncoding29541C29541TCT7474B.1.3510.0022
noncoding29541C29541TCT7373B.1.4270.003686
noncoding29541C29541TCT7272P.10.001134
noncoding29541C29541TCT6161AY.470.001897
noncoding29541C29541TCT5454B.1.221.30.045
noncoding29541C29541TCT5353AY.1160.015199
noncoding29541C29541TCT5151B.1.5170.021776
noncoding29541C29541TCT4949C.370.005687
noncoding29541C29541TCT4545B.1.5890.340909
noncoding29541C29541TCT4343AY.390.001063
noncoding29541C29541TCT4242AY.60.001727
noncoding29541C29541TCT3737B.1.5650.029984
noncoding29541C29541TCT3636P.1.170.005823
noncoding29541C29541TCT3535B.1.4290.000824
noncoding29541C29541TCT3333AY.420.001328
noncoding29541C29541TCT3333AY.450.004016
noncoding29541C29541TCT3333B.1.5260.000776
noncoding29541C29541TCT3232AY.200.001244
noncoding29541C29541TCT3030AY.290.000473
noncoding29541C29541TCT3030B.1.5960.002614
noncoding29541C29541TCT2929AY.9.20.001065
noncoding29541C29541TCT2828AY.9.10.002344
noncoding29541C29541TCT2727AY.610.002829
noncoding29541C29541TCT2626B.1.1.2220.005304
noncoding29541C29541TCT2525B.1.1.5190.000993
noncoding29541C29541TCT2424B.1.1.1090.96
noncoding29541C29541TCT2323AY.330.001536
noncoding29541C29541TCT2222AY.1000.001012
noncoding29541C29541TCT2222B.1.5970.101852
noncoding29541C29541TCT2020AY.140.00176
noncoding29541C29541TCT2020B.1.258.220.053333
noncoding29541C29541TCT1919AY.4.20.000412
noncoding29541C29541TCT1919AZ.30.028875
noncoding29541C29541TCT1818B.1.1.3060.007891
noncoding29541C29541TCT1717AY.340.001648
noncoding29541C29541TCT1717P.1.140.000813
noncoding29541C29541TCT1616A.2.5.20.025157
noncoding29541C29541TCT1616AY.1180.001002
noncoding29541C29541TCT1616AY.4.2.10.002384
noncoding29541C29541TCT1616B.1.2340.002111
noncoding29541C29541TCT1515AY.1210.00203
noncoding29541C29541TCT1515AY.130.002415
noncoding29541C29541TCT1313B.1.5870.024668
noncoding29541C29541TCT1212AY.1190.000424
noncoding29541C29541TCT1212AY.1200.000446
noncoding29541C29541TCT1212AY.260.00034
noncoding29541C29541TCT1212B.1.1.1890.018154
noncoding29541C29541TCT1212B.1.360.001751
noncoding29541C29541TCT1212B.1.6210.001062
noncoding29541C29541TCT1212B.1.6370.000877
noncoding29541C29541TCT1111AY.3.10.000938
noncoding29541C29541TCT1111B.1.2580.000732
noncoding29541C29541TCT1010AY.39.10.000396
noncoding29541C29541TCT1010AY.650.00533
noncoding29541C29541TCT1010AY.740.001156
noncoding29541C29541TCT1010AY.980.00079
noncoding29541C29541TCT1010B.1.1.630.003858
noncoding29541C29541TCT1010B.1.617.10.00129
noncoding29541C29541TCT99B.1.5610.003573
noncoding29541C29541TCT88AY.230.000558
noncoding29541C29541TCT88AY.460.000833
noncoding29541C29541TCT88AY.850.003417
noncoding29541C29541TCT88B.1.1.2200.01487
noncoding29541C29541TCT88B.1.1.3220.070175
noncoding29541C29541TCT88B.1.1.330.003367
noncoding29541C29541TCT88B.1.1.3710.083333
noncoding29541C29541TCT88B.1.177.620.009535
noncoding29541C29541TCT88B.1.2400.001725
noncoding29541C29541TCT88B.1.4920.056338
noncoding29541C29541TCT88B.1.6090.003835
noncoding29541C29541TCT77B.1.1.2840.000752
noncoding29541C29541TCT77B.1.1.3180.002112
noncoding29541C29541TCT77B.1.177.770.005084
noncoding29541C29541TCT77B.1.177.810.001325
noncoding29541C29541TCT77Q.80.001154
noncoding29541C29541TCT66AY.46.60.000433
noncoding29541C29541TCT66AY.5.30.002024
noncoding29541C29541TCT66AY.590.003178
noncoding29541C29541TCT66B.1.1.2140.000333
noncoding29541C29541TCT66B.1.2320.003224
noncoding29541C29541TCT66B.1.3110.001647
noncoding29541C29541TCT66B.1.575.10.014634
noncoding29541C29541TCT66B.1.5950.001566
noncoding29541C29541TCT66B.1.6190.005226
noncoding29541C29541TCT66B.1.6280.002114
noncoding29541C29541TCT66D.20.00045
noncoding29541C29541TCT66Q.10.000758
noncoding29541C29541TCT55AY.16.10.00235
noncoding29541C29541TCT55AY.46.40.000823
noncoding29541C29541TCT55AY.540.000477
noncoding29541C29541TCT55AY.7.20.002796
noncoding29541C29541TCT55AY.75.10.000902
noncoding29541C29541TCT55AY.90.000338
noncoding29541C29541TCT55B.1.1.10.001633
noncoding29541C29541TCT55B.1.1.370.000964
noncoding29541C29541TCT55B.1.177.560.003338
noncoding29541C29541TCT55B.1.177.570.001405
noncoding29541C29541TCT55B.1.36.310.008757
noncoding29541C29541TCT55B.1.36.380.00821
noncoding29541C29541TCT55B.1.3960.003529
noncoding29541C29541TCT55B.1.4430.023364
noncoding29541C29541TCT55B.1.466.20.001956
noncoding29541C29541TCT55B.40.011038
noncoding29541C29541TCT55P.1.150.001162
noncoding29541C29541TCT55P.1.70.001596
noncoding29541C29541TCT55R.10.00045
noncoding29541C29541TCT44AD.20.000876
noncoding29541C29541TCT44AY.270.000259
noncoding29541C29541TCT44AY.4.50.00043
noncoding29541C29541TCT44AY.670.001857
noncoding29541C29541TCT44AY.70.000784
noncoding29541C29541TCT44AY.750.000224
noncoding29541C29541TCT44AY.99.20.000369
noncoding29541C29541TCT44B0.000511
noncoding29541C29541TCT44B.1.1.2910.00297
noncoding29541C29541TCT44B.1.1.3120.007648
noncoding29541C29541TCT44B.1.1.3170.001647
noncoding29541C29541TCT44B.1.1.3690.001785
noncoding29541C29541TCT44B.1.177.40.000844
noncoding29541C29541TCT44B.1.36.70.016
noncoding29541C29541TCT44B.1.3890.004008
noncoding29541C29541TCT44B.1.4700.005618
noncoding29541C29541TCT33AY.1100.000338
noncoding29541C29541TCT33AY.190.003421
noncoding29541C29541TCT33AY.300.001187
noncoding29541C29541TCT33AY.46.50.000595
noncoding29541C29541TCT33AY.480.001395
noncoding29541C29541TCT33AY.520.002443
noncoding29541C29541TCT33AY.640.001786
noncoding29541C29541TCT33AY.910.002191
noncoding29541C29541TCT33AY.98.10.000145
noncoding29541C29541TCT33B.1.1.2160.002671
noncoding29541C29541TCT33B.1.1.2260.017442
noncoding29541C29541TCT33B.1.1.480.008621
noncoding29541C29541TCT33B.1.177.730.001699
noncoding29541C29541TCT33B.1.177.790.007026
noncoding29541C29541TCT33B.1.36.120.028846
noncoding29541C29541TCT33B.1.36.180.001261
noncoding29541C29541TCT33B.1.36.290.001552
noncoding29541C29541TCT33B.1.3990.005803
noncoding29541C29541TCT33B.1.80.005917
noncoding29541C29541TCT33C.360.002732
noncoding29541C29541TCT33N.50.0053
noncoding29541C29541TCT33P.1.100.000808
noncoding29541C29541TCT33P.1.160.001122
noncoding29541C29541TCT22A.23.10.001408
noncoding29541C29541TCT22AU.10.002532
noncoding29541C29541TCT22AY.1010.000981
noncoding29541C29541TCT22AY.1080.002205
noncoding29541C29541TCT22AY.1110.000366
noncoding29541C29541TCT22AY.1130.000285
noncoding29541C29541TCT22AY.1170.000169
noncoding29541C29541TCT22AY.160.000759
noncoding29541C29541TCT22AY.240.000862
noncoding29541C29541TCT22AY.350.000466
noncoding29541C29541TCT22AY.360.000296
noncoding29541C29541TCT22AY.380.000999
noncoding29541C29541TCT22AY.500.001599
noncoding29541C29541TCT22AY.550.001835
noncoding29541C29541TCT22AY.680.000547
noncoding29541C29541TCT22AY.7.10.000225
noncoding29541C29541TCT22AY.700.000417
noncoding29541C29541TCT22AY.710.00095
noncoding29541C29541TCT22AY.840.000875
noncoding29541C29541TCT22AY.880.001768
noncoding29541C29541TCT22AY.920.000575
noncoding29541C29541TCT22AY.930.000546
noncoding29541C29541TCT22AZ.10.001735
noncoding29541C29541TCT22B.1.1.1610.007067
noncoding29541C29541TCT22B.1.1.2030.033898
noncoding29541C29541TCT22B.1.1.2070.002364
noncoding29541C29541TCT22B.1.1.250.001137
noncoding29541C29541TCT22B.1.1.3030.005525
noncoding29541C29541TCT22B.1.1.3230.028169
noncoding29541C29541TCT22B.1.1.3720.001377
noncoding29541C29541TCT22B.1.1.4640.002946
noncoding29541C29541TCT22B.1.1.500.001358
noncoding29541C29541TCT22B.1.1110.00235
noncoding29541C29541TCT22B.1.1460.008475
noncoding29541C29541TCT22B.1.160.140.004237
noncoding29541C29541TCT22B.1.177.210.000153
noncoding29541C29541TCT22B.1.177.430.002954
noncoding29541C29541TCT22B.1.177.690.002967
noncoding29541C29541TCT22B.1.177.750.002081
noncoding29541C29541TCT22B.1.177.830.002963
noncoding29541C29541TCT22B.1.177.860.000367
noncoding29541C29541TCT22B.1.230.012121
noncoding29541C29541TCT22B.1.258.30.00335
noncoding29541C29541TCT22B.1.2700.011236
noncoding29541C29541TCT22B.1.3360.004878
noncoding29541C29541TCT22B.1.3550.022222
noncoding29541C29541TCT22B.1.4280.002041
noncoding29541C29541TCT22B.1.5560.015038
noncoding29541C29541TCT22B.1.5740.004301
noncoding29541C29541TCT22B.1.6300.010471
noncoding29541C29541TCT22C.180.005181
noncoding29541C29541TCT22C.20.032258
noncoding29541C29541TCT22C.30.015267
noncoding29541C29541TCT22C.36.30.001134
noncoding29541C29541TCT22Q.30.00029
noncoding29541C29541TCT11A0.000387
noncoding29541C29541TCT11A.270.001656
noncoding29541C29541TCT11AH.30.003802
noncoding29541C29541TCT11AU.30.00211
noncoding29541C29541TCT11AY.10.000396
noncoding29541C29541TCT11AY.1070.000466
noncoding29541C29541TCT11AY.1140.000231
noncoding29541C29541TCT11AY.120.000316
noncoding29541C29541TCT11AY.120.10.000321
noncoding29541C29541TCT11AY.120.20.001285
noncoding29541C29541TCT11AY.29.10.000221
noncoding29541C29541TCT11AY.310.018519
noncoding29541C29541TCT11AY.4.40.000409
noncoding29541C29541TCT11AY.46.10.001027
noncoding29541C29541TCT11AY.46.30.000934
noncoding29541C29541TCT11AY.5.40.000277
noncoding29541C29541TCT11AY.600.000938
noncoding29541C29541TCT11AY.620.000436
noncoding29541C29541TCT11AY.690.000187
noncoding29541C29541TCT11AY.720.001361
noncoding29541C29541TCT11AY.80.000606
noncoding29541C29541TCT11AY.940.000443
noncoding29541C29541TCT11AZ.60.008403
noncoding29541C29541TCT11B.1.1.1170.009709
noncoding29541C29541TCT11B.1.1.1410.002012
noncoding29541C29541TCT11B.1.1.1570.000913
noncoding29541C29541TCT11B.1.1.1760.000439
noncoding29541C29541TCT11B.1.1.2410.00207
noncoding29541C29541TCT11B.1.1.2770.000759
noncoding29541C29541TCT11B.1.1.2940.001266
noncoding29541C29541TCT11B.1.1.3010.001179
noncoding29541C29541TCT11B.1.1.3110.000358
noncoding29541C29541TCT11B.1.1.3370.003597
noncoding29541C29541TCT11B.1.1.3510.002793
noncoding29541C29541TCT11B.1.1.3740.002375
noncoding29541C29541TCT11B.1.1.3890.006061
noncoding29541C29541TCT11B.1.1.390.00051
noncoding29541C29541TCT11B.1.1.3980.003226
noncoding29541C29541TCT11B.1.1.4160.000905
noncoding29541C29541TCT11B.1.1.4200.001006
noncoding29541C29541TCT11B.1.1.4340.000349
noncoding29541C29541TCT11B.1.1.4660.008696
noncoding29541C29541TCT11B.1.1.610.008772
noncoding29541C29541TCT11B.1.1.700.000341
noncoding29541C29541TCT11B.1.110.30.000718
noncoding29541C29541TCT11B.1.1280.000635
noncoding29541C29541TCT11B.1.1390.000733
noncoding29541C29541TCT11B.1.1470.000756
noncoding29541C29541TCT11B.1.1570.002985
noncoding29541C29541TCT11B.1.160.160.000929
noncoding29541C29541TCT11B.1.1620.005025
noncoding29541C29541TCT11B.1.177.120.000152
noncoding29541C29541TCT11B.1.177.150.000631
noncoding29541C29541TCT11B.1.177.160.000664
noncoding29541C29541TCT11B.1.177.330.001645
noncoding29541C29541TCT11B.1.177.450.000381
noncoding29541C29541TCT11B.1.177.480.003125
noncoding29541C29541TCT11B.1.177.500.004695
noncoding29541C29541TCT11B.1.177.60.000977
noncoding29541C29541TCT11B.1.177.630.002703
noncoding29541C29541TCT11B.1.177.740.015152
noncoding29541C29541TCT11B.1.177.80.000752
noncoding29541C29541TCT11B.1.1950.005025
noncoding29541C29541TCT11B.1.2060.000816
noncoding29541C29541TCT11B.1.221.10.002907
noncoding29541C29541TCT11B.1.2220.001692
noncoding29541C29541TCT11B.1.258.140.00098
noncoding29541C29541TCT11B.1.2910.019231
noncoding29541C29541TCT11B.1.3290.000608
noncoding29541C29541TCT11B.1.351.20.000303
noncoding29541C29541TCT11B.1.351.30.000876
noncoding29541C29541TCT11B.1.351.50.0006
noncoding29541C29541TCT11B.1.36.170.000494
noncoding29541C29541TCT11B.1.36.80.001
noncoding29541C29541TCT11B.1.36.90.003215
noncoding29541C29541TCT11B.1.3670.000792
noncoding29541C29541TCT11B.1.3700.008
noncoding29541C29541TCT11B.1.4000.000429
noncoding29541C29541TCT11B.1.4330.003195
noncoding29541C29541TCT11B.1.4360.001029
noncoding29541C29541TCT11B.1.4370.020833
noncoding29541C29541TCT11B.1.438.10.000107
noncoding29541C29541TCT11B.1.4410.009615
noncoding29541C29541TCT11B.1.4520.013699
noncoding29541C29541TCT11B.1.4530.003236
noncoding29541C29541TCT11B.1.4620.007246
noncoding29541C29541TCT11B.1.4690.00361
noncoding29541C29541TCT11B.1.4910.052632
noncoding29541C29541TCT11B.1.4990.00105
noncoding29541C29541TCT11B.1.5160.001957
noncoding29541C29541TCT11B.1.5250.000113
noncoding29541C29541TCT11B.1.5300.007143
noncoding29541C29541TCT11B.1.5380.008065
noncoding29541C29541TCT11B.1.5580.004566
noncoding29541C29541TCT11B.1.5640.000426
noncoding29541C29541TCT11B.1.5710.009709
noncoding29541C29541TCT11B.1.5820.000491
noncoding29541C29541TCT11B.1.6230.000536
noncoding29541C29541TCT11B.1.6250.002353
noncoding29541C29541TCT11B.1.6270.00202
noncoding29541C29541TCT11B.1.6340.003425
noncoding29541C29541TCT11B.30.000831
noncoding29541C29541TCT11C.10.002392
noncoding29541C29541TCT11C.160.00106
noncoding29541C29541TCT11P.1.10.000318
noncoding29541C29541TCT11P.1.110.010204
noncoding29541C29541TCT11P.1.120.000484
noncoding29541C29541TCT11P.1.20.001156
noncoding29541C29541TCT11P.1.40.000977
noncoding29541C29541TCT11P.1.60.001946
noncoding29541C29541TCT11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.