CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C29541A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29541C29541AnoncodingCA6767129541-29541

Details of the mutation C29541A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29541C29541ACA6767All0.000013
noncoding29541C29541ACA2323AY.30.000229
noncoding29541C29541ACA88AY.40.000012
noncoding29541C29541ACA88B.1.1.70.000007
noncoding29541C29541ACA66AY.430.000027
noncoding29541C29541ACA55B.1.617.20.000019
noncoding29541C29541ACA33AY.1000.000138
noncoding29541C29541ACA22AY.4.20.000043
noncoding29541C29541ACA22B.10.000018
noncoding29541C29541ACA22P.20.000373
noncoding29541C29541ACA11AY.390.000025
noncoding29541C29541ACA11AY.46.60.000072
noncoding29541C29541ACA11AY.60.000041
noncoding29541C29541ACA11AY.690.000187
noncoding29541C29541ACA11AY.720.001361
noncoding29541C29541ACA11B.1.1.330.000421
noncoding29541C29541ACA11B.1.160.110.005714
noncoding29541C29541ACA11B.1.1770.000013

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.