CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C28269T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding28269C28269TnoncodingCT24622462128269-28269

Details of the mutation C28269T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding28269C28269TCT24622462All0.000471
noncoding28269C28269TCT16541654B.1.1.70.001481
noncoding28269C28269TCT228228B.1.1490.780822
noncoding28269C28269TCT8282AY.1030.000509
noncoding28269C28269TCT4949B.1.20.000431
noncoding28269C28269TCT4444B.1.5090.038095
noncoding28269C28269TCT4343B.1.1770.000566
noncoding28269C28269TCT3737B.10.000339
noncoding28269C28269TCT3535AY.40.000054
noncoding28269C28269TCT3232B.1.617.10.004127
noncoding28269C28269TCT2525B.1.10.000454
noncoding28269C28269TCT1717AY.440.000103
noncoding28269C28269TCT1717B.1.177.210.0013
noncoding28269C28269TCT1616AY.290.000252
noncoding28269C28269TCT1515B.1.617.20.000056
noncoding28269C28269TCT1111AY.250.000066
noncoding28269C28269TCT1010B.1.3510.000297
noncoding28269C28269TCT99B.1.1.5230.014063
noncoding28269C28269TCT77B.1.1.5190.000278
noncoding28269C28269TCT77B.550.020649
noncoding28269C28269TCT66B.1.36.290.003104
noncoding28269C28269TCT55AY.30.00005
noncoding28269C28269TCT55AY.430.000022
noncoding28269C28269TCT44AY.460.000416
noncoding28269C28269TCT44B.1.1.1980.005874
noncoding28269C28269TCT44B.1.258.170.000416
noncoding28269C28269TCT44B.1.4290.000094
noncoding28269C28269TCT33AY.1000.000138
noncoding28269C28269TCT33AY.130.000483
noncoding28269C28269TCT33B.1.1.5250.016393
noncoding28269C28269TCT33B.1.2580.0002
noncoding28269C28269TCT33B.1.5960.000261
noncoding28269C28269TCT33C.350.002322
noncoding28269C28269TCT22AY.1100.000225
noncoding28269C28269TCT22AY.140.000176
noncoding28269C28269TCT22AY.260.000057
noncoding28269C28269TCT22AY.4.20.000043
noncoding28269C28269TCT22AY.99.20.000184
noncoding28269C28269TCT22B.1.1600.000062
noncoding28269C28269TCT22B.1.1620.01005
noncoding28269C28269TCT22B.1.36.170.000988
noncoding28269C28269TCT22B.1.3670.001585
noncoding28269C28269TCT22B.1.3990.003868
noncoding28269C28269TCT22B.1.5250.000226
noncoding28269C28269TCT22B.1.5750.000607
noncoding28269C28269TCT22P.10.000032
noncoding28269C28269TCT11A0.000387
noncoding28269C28269TCT11A.20.000662
noncoding28269C28269TCT11AY.10.000396
noncoding28269C28269TCT11AY.1060.000335
noncoding28269C28269TCT11AY.1090.00074
noncoding28269C28269TCT11AY.120.000316
noncoding28269C28269TCT11AY.160.00038
noncoding28269C28269TCT11AY.190.00114
noncoding28269C28269TCT11AY.360.000148
noncoding28269C28269TCT11AY.390.000025
noncoding28269C28269TCT11AY.50.000021
noncoding28269C28269TCT11AY.540.000095
noncoding28269C28269TCT11AY.700.000209
noncoding28269C28269TCT11AY.980.000079
noncoding28269C28269TCT11AY.98.10.000048
noncoding28269C28269TCT11AY.990.001049
noncoding28269C28269TCT11B.1.1.1740.003378
noncoding28269C28269TCT11B.1.1.1760.000439
noncoding28269C28269TCT11B.1.1.2140.000055
noncoding28269C28269TCT11B.1.1.2220.000204
noncoding28269C28269TCT11B.1.1.2310.003096
noncoding28269C28269TCT11B.1.1.2840.000107
noncoding28269C28269TCT11B.1.1.3160.000925
noncoding28269C28269TCT11B.1.1.370.000193
noncoding28269C28269TCT11B.1.1.3760.005952
noncoding28269C28269TCT11B.1.1.390.00051
noncoding28269C28269TCT11B.1.1.700.000341
noncoding28269C28269TCT11B.1.177.550.002331
noncoding28269C28269TCT11B.1.177.830.001481
noncoding28269C28269TCT11B.1.2320.000537
noncoding28269C28269TCT11B.1.2390.001221
noncoding28269C28269TCT11B.1.2430.00007
noncoding28269C28269TCT11B.1.2650.001271
noncoding28269C28269TCT11B.1.3050.002151
noncoding28269C28269TCT11B.1.3490.000715
noncoding28269C28269TCT11B.1.360.000146
noncoding28269C28269TCT11B.1.36.10.00114
noncoding28269C28269TCT11B.1.390.003906
noncoding28269C28269TCT11B.1.5030.002488
noncoding28269C28269TCT11B.1.5480.035714
noncoding28269C28269TCT11B.1.617.30.002985
noncoding28269C28269TCT11B.1.6210.000089
noncoding28269C28269TCT11B.1.6370.000073
noncoding28269C28269TCT11B.1.770.045455
noncoding28269C28269TCT11D.20.000075
noncoding28269C28269TCT11P.20.000187
noncoding28269C28269TCT11Q.10.000126
noncoding28269C28269TCT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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