CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C27389T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding27389C27389TnoncodingCT2901729017127389-27389

Details of the mutation C27389T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding27389C27389TCT2901729017All0.00555
noncoding27389C27389TCT1066410664B.1.1.70.009547
noncoding27389C27389TCT36353635AY.40.005658
noncoding27389C27389TCT27982798B.1.6280.985906
noncoding27389C27389TCT11021102AY.430.004882
noncoding27389C27389TCT10581058AY.200.041119
noncoding27389C27389TCT10551055AY.50.021785
noncoding27389C27389TCT716716B.1.617.20.002696
noncoding27389C27389TCT546546AY.1030.00339
noncoding27389C27389TCT471471AY.730.313373
noncoding27389C27389TCT422422AY.250.002538
noncoding27389C27389TCT392392AY.390.009687
noncoding27389C27389TCT297297P.10.004679
noncoding27389C27389TCT292292AY.440.001777
noncoding27389C27389TCT222222B.1.1.2140.012311
noncoding27389C27389TCT215215B.10.001969
noncoding27389C27389TCT203203B.1.20.001787
noncoding27389C27389TCT191191B.1.5260.004489
noncoding27389C27389TCT181181AY.1020.004799
noncoding27389C27389TCT177177P.40.673004
noncoding27389C27389TCT175175AY.4.20.003796
noncoding27389C27389TCT162162B.1.1770.002133
noncoding27389C27389TCT154154B.1.4270.007777
noncoding27389C27389TCT143143AY.30.001422
noncoding27389C27389TCT121121AY.1130.017229
noncoding27389C27389TCT120120AY.750.006723
noncoding27389C27389TCT102102B.1.438.10.010941
noncoding27389C27389TCT101101AY.46.20.064168
noncoding27389C27389TCT100100B.1.1.5190.003971
noncoding27389C27389TCT9292B.1.10.001669
noncoding27389C27389TCT8787B.1.4290.002047
noncoding27389C27389TCT8080AY.1180.005012
noncoding27389C27389TCT7373B.1.3510.00217
noncoding27389C27389TCT7272Q.80.011873
noncoding27389C27389TCT7171B.1.6370.005188
noncoding27389C27389TCT6868AY.900.046543
noncoding27389C27389TCT6666P.1.140.003155
noncoding27389C27389TCT6262AY.1190.002189
noncoding27389C27389TCT5555AY.9.20.00202
noncoding27389C27389TCT5454B.1.177.80.040632
noncoding27389C27389TCT5050Q.10.006316
noncoding27389C27389TCT4949AY.3.10.004178
noncoding27389C27389TCT4848AY.290.000757
noncoding27389C27389TCT4747AY.5.40.013005
noncoding27389C27389TCT4646AY.1000.002116
noncoding27389C27389TCT4444B.1.1600.001372
noncoding27389C27389TCT4040AY.46.60.002888
noncoding27389C27389TCT3939AY.340.003782
noncoding27389C27389TCT3939R.10.00351
noncoding27389C27389TCT3939S.10.193069
noncoding27389C27389TCT3838AY.46.40.006251
noncoding27389C27389TCT3737AY.99.20.00341
noncoding27389C27389TCT3737B.1.5030.09204
noncoding27389C27389TCT3636AY.330.002404
noncoding27389C27389TCT3636B.1.5250.004074
noncoding27389C27389TCT3434AY.39.10.001347
noncoding27389C27389TCT3434AY.470.001058
noncoding27389C27389TCT3434B.1.177.620.040524
noncoding27389C27389TCT3333P.1.150.007667
noncoding27389C27389TCT3232AY.420.001287
noncoding27389C27389TCT2727B.1.2340.003562
noncoding27389C27389TCT2727B.1.2580.001797
noncoding27389C27389TCT2727B.1.360.003939
noncoding27389C27389TCT2626C.370.003018
noncoding27389C27389TCT2525AY.1200.000929
noncoding27389C27389TCT2525AY.450.003042
noncoding27389C27389TCT2525B.1.5960.002178
noncoding27389C27389TCT2424AY.116.10.007474
noncoding27389C27389TCT2424B.1.1.3330.025834
noncoding27389C27389TCT2424B.1.5760.021759
noncoding27389C27389TCT2323B.1.177.160.015282
noncoding27389C27389TCT2323B.1.2430.0016
noncoding27389C27389TCT2222AY.1170.001859
noncoding27389C27389TCT2222AY.360.003261
noncoding27389C27389TCT2222B.1.1.500.014936
noncoding27389C27389TCT2222B.1.177.420.019678
noncoding27389C27389TCT2121AY.4.50.002257
noncoding27389C27389TCT2121AY.460.002186
noncoding27389C27389TCT2121AY.540.002002
noncoding27389C27389TCT2121AY.60.000864
noncoding27389C27389TCT2121AY.7.20.011745
noncoding27389C27389TCT2121B.1.6210.001859
noncoding27389C27389TCT2020B.1.36.170.009881
noncoding27389C27389TCT1919AY.230.001325
noncoding27389C27389TCT1919B.1.177.530.045455
noncoding27389C27389TCT1818AY.1160.005162
noncoding27389C27389TCT1818AY.370.005689
noncoding27389C27389TCT1818AY.4.2.10.002682
noncoding27389C27389TCT1818Q.30.002611
noncoding27389C27389TCT1717AY.930.004642
noncoding27389C27389TCT1717B.1.2210.001208
noncoding27389C27389TCT1717C.36.30.009643
noncoding27389C27389TCT1717P.1.170.00275
noncoding27389C27389TCT1616AY.130.002576
noncoding27389C27389TCT1616AY.610.001676
noncoding27389C27389TCT1616AY.98.10.000775
noncoding27389C27389TCT1616B.1.6330.666667
noncoding27389C27389TCT1515B.1.6270.030303
noncoding27389C27389TCT1515P.1.70.004789
noncoding27389C27389TCT1515P.50.205479
noncoding27389C27389TCT1414AY.980.001106
noncoding27389C27389TCT1414P.1.120.006776
noncoding27389C27389TCT1313AY.320.006922
noncoding27389C27389TCT1313B.1.177.810.002461
noncoding27389C27389TCT1212B.1.36.290.006208
noncoding27389C27389TCT1111AY.1060.003684
noncoding27389C27389TCT1111AY.160.004176
noncoding27389C27389TCT1111AY.260.000311
noncoding27389C27389TCT1111B.1.1.630.004244
noncoding27389C27389TCT1111B.1.258.170.001144
noncoding27389C27389TCT1111P.1.40.010742
noncoding27389C27389TCT1010AY.90.000676
noncoding27389C27389TCT1010AY.9.10.000837
noncoding27389C27389TCT1010B.1.1.2220.00204
noncoding27389C27389TCT1010B.1.1.280.003112
noncoding27389C27389TCT1010B.1.36.80.01
noncoding27389C27389TCT1010B.1.3960.007057
noncoding27389C27389TCT1010Y.10.128205
noncoding27389C27389TCT99A.290.047872
noncoding27389C27389TCT99AY.16.10.004229
noncoding27389C27389TCT99B.1.5510.011613
noncoding27389C27389TCT99B.1.6230.004828
noncoding27389C27389TCT88AY.120.002528
noncoding27389C27389TCT88AY.740.000925
noncoding27389C27389TCT88B.1.177.40.001688
noncoding27389C27389TCT88B.1.3110.002197
noncoding27389C27389TCT88B.1.4090.00625
noncoding27389C27389TCT88B.1.5640.003407
noncoding27389C27389TCT77AY.1210.000947
noncoding27389C27389TCT77AY.190.007982
noncoding27389C27389TCT77AY.34.10.00357
noncoding27389C27389TCT77AY.700.00146
noncoding27389C27389TCT77AY.920.002011
noncoding27389C27389TCT77B.1.1.2280.021341
noncoding27389C27389TCT77B.1.1.3180.002112
noncoding27389C27389TCT77B.1.4700.009831
noncoding27389C27389TCT77B.1.5950.001827
noncoding27389C27389TCT66AY.100.00318
noncoding27389C27389TCT66B.1.1260.007653
noncoding27389C27389TCT66B.1.36.380.009852
noncoding27389C27389TCT66B.1.466.20.002347
noncoding27389C27389TCT66B.1.617.10.000774
noncoding27389C27389TCT66D.20.00045
noncoding27389C27389TCT66Q.40.002729
noncoding27389C27389TCT55AY.1090.003698
noncoding27389C27389TCT55AY.840.002187
noncoding27389C27389TCT55B0.000639
noncoding27389C27389TCT55B.1.177.730.002831
noncoding27389C27389TCT55B.1.2320.002687
noncoding27389C27389TCT55B.1.5750.001517
noncoding27389C27389TCT55B.1.5910.053191
noncoding27389C27389TCT44A.23.10.002817
noncoding27389C27389TCT44AY.1140.000924
noncoding27389C27389TCT44AY.270.000259
noncoding27389C27389TCT44AY.46.10.004107
noncoding27389C27389TCT44AY.690.000747
noncoding27389C27389TCT44AY.70.000784
noncoding27389C27389TCT44B.1.1.1760.001757
noncoding27389C27389TCT44B.1.1.250.002274
noncoding27389C27389TCT44B.1.1.3260.007042
noncoding27389C27389TCT44B.1.1.3540.017544
noncoding27389C27389TCT44B.1.1.4160.00362
noncoding27389C27389TCT44B.1.1.4340.001394
noncoding27389C27389TCT44B.1.160.240.017699
noncoding27389C27389TCT44B.1.177.120.000607
noncoding27389C27389TCT44B.1.177.330.006579
noncoding27389C27389TCT44B.1.2060.003263
noncoding27389C27389TCT44B.1.2400.000862
noncoding27389C27389TCT44B.1.351.20.00121
noncoding27389C27389TCT44B.1.5600.018519
noncoding27389C27389TCT44B.1.6090.001918
noncoding27389C27389TCT44B.1.6190.003484
noncoding27389C27389TCT44P.20.000747
noncoding27389C27389TCT33AY.120.10.000963
noncoding27389C27389TCT33AY.140.000264
noncoding27389C27389TCT33AY.20.001068
noncoding27389C27389TCT33AY.300.001187
noncoding27389C27389TCT33AY.4.10.002212
noncoding27389C27389TCT33AY.4.40.001227
noncoding27389C27389TCT33AY.410.000882
noncoding27389C27389TCT33AY.5.30.001012
noncoding27389C27389TCT33AY.75.10.000541
noncoding27389C27389TCT33AY.770.003382
noncoding27389C27389TCT33AY.850.001282
noncoding27389C27389TCT33AY.860.00249
noncoding27389C27389TCT33AY.880.002653
noncoding27389C27389TCT33B.1.1.10.00098
noncoding27389C27389TCT33B.1.1.2160.002671
noncoding27389C27389TCT33B.1.1.2840.000322
noncoding27389C27389TCT33B.1.177.210.000229
noncoding27389C27389TCT33B.1.177.70.000495
noncoding27389C27389TCT33B.1.177.860.00055
noncoding27389C27389TCT33B.1.3670.002377
noncoding27389C27389TCT33B.1.3690.000856
noncoding27389C27389TCT33B.1.3890.003006
noncoding27389C27389TCT33B.1.4000.001287
noncoding27389C27389TCT33B.1.5610.001191
noncoding27389C27389TCT33B.1.6040.051724
noncoding27389C27389TCT33B.1.6300.015707
noncoding27389C27389TCT33N.50.0053
noncoding27389C27389TCT22A.2.50.000998
noncoding27389C27389TCT22A.270.003311
noncoding27389C27389TCT22AU.30.004219
noncoding27389C27389TCT22AY.10.000791
noncoding27389C27389TCT22AY.1050.001286
noncoding27389C27389TCT22AY.1110.000366
noncoding27389C27389TCT22AY.380.000999
noncoding27389C27389TCT22AY.530.000575
noncoding27389C27389TCT22AY.550.001835
noncoding27389C27389TCT22AY.7.10.000225
noncoding27389C27389TCT22AY.710.00095
noncoding27389C27389TCT22AY.780.003082
noncoding27389C27389TCT22AY.870.001665
noncoding27389C27389TCT22AY.940.000885
noncoding27389C27389TCT22AY.950.001522
noncoding27389C27389TCT22AY.970.003401
noncoding27389C27389TCT22B.1.1.2630.003115
noncoding27389C27389TCT22B.1.1.2850.013072
noncoding27389C27389TCT22B.1.1.3060.000877
noncoding27389C27389TCT22B.1.1.330.000842
noncoding27389C27389TCT22B.1.1.3970.004505
noncoding27389C27389TCT22B.1.1620.01005
noncoding27389C27389TCT22B.1.177.440.001038
noncoding27389C27389TCT22B.1.177.560.001335
noncoding27389C27389TCT22B.1.177.580.002663
noncoding27389C27389TCT22B.1.177.60.001953
noncoding27389C27389TCT22B.1.177.820.000955
noncoding27389C27389TCT22B.1.214.30.014286
noncoding27389C27389TCT22B.1.2370.00995
noncoding27389C27389TCT22B.1.2390.002442
noncoding27389C27389TCT22B.1.2840.026316
noncoding27389C27389TCT22B.1.351.30.001753
noncoding27389C27389TCT22B.1.36.100.009569
noncoding27389C27389TCT22B.1.36.180.00084
noncoding27389C27389TCT22B.1.4250.005988
noncoding27389C27389TCT22B.1.4380.013072
noncoding27389C27389TCT22B.1.4560.006536
noncoding27389C27389TCT22B.1.4680.011429
noncoding27389C27389TCT22B.1.4740.003802
noncoding27389C27389TCT22B.1.4990.002101
noncoding27389C27389TCT22B.1.5170.000854
noncoding27389C27389TCT22B.1.5240.002813
noncoding27389C27389TCT22B.1.5770.001375
noncoding27389C27389TCT22B.1.5870.003795
noncoding27389C27389TCT22B.1.6320.013423
noncoding27389C27389TCT22B.1.910.004149
noncoding27389C27389TCT22N.90.011905
noncoding27389C27389TCT22P.1.100.000539
noncoding27389C27389TCT22P.60.006289
noncoding27389C27389TCT11A.20.000662
noncoding27389C27389TCT11A.2.5.20.001572
noncoding27389C27389TCT11A.2.5.30.010309
noncoding27389C27389TCT11AE.80.000489
noncoding27389C27389TCT11AH.20.012048
noncoding27389C27389TCT11AJ.10.045455
noncoding27389C27389TCT11AY.1100.000113
noncoding27389C27389TCT11AY.120.20.001285
noncoding27389C27389TCT11AY.120.2.10.000498
noncoding27389C27389TCT11AY.23.10.000417
noncoding27389C27389TCT11AY.280.00189
noncoding27389C27389TCT11AY.29.10.000221
noncoding27389C27389TCT11AY.350.000233
noncoding27389C27389TCT11AY.39.20.001541
noncoding27389C27389TCT11AY.400.000964
noncoding27389C27389TCT11AY.510.000909
noncoding27389C27389TCT11AY.560.001605
noncoding27389C27389TCT11AY.570.000656
noncoding27389C27389TCT11AY.580.000907
noncoding27389C27389TCT11AY.660.00107
noncoding27389C27389TCT11AY.670.000464
noncoding27389C27389TCT11AY.680.000274
noncoding27389C27389TCT11AY.720.001361
noncoding27389C27389TCT11AY.890.004902
noncoding27389C27389TCT11AY.910.00073
noncoding27389C27389TCT11AY.960.002075
noncoding27389C27389TCT11AZ.30.00152
noncoding27389C27389TCT11B.1.1.100.001115
noncoding27389C27389TCT11B.1.1.1010.01
noncoding27389C27389TCT11B.1.1.1170.009709
noncoding27389C27389TCT11B.1.1.1410.002012
noncoding27389C27389TCT11B.1.1.1530.001095
noncoding27389C27389TCT11B.1.1.1570.000913
noncoding27389C27389TCT11B.1.1.1580.012195
noncoding27389C27389TCT11B.1.1.1610.003534
noncoding27389C27389TCT11B.1.1.1700.001247
noncoding27389C27389TCT11B.1.1.1980.001468
noncoding27389C27389TCT11B.1.1.2170.003636
noncoding27389C27389TCT11B.1.1.2580.003257
noncoding27389C27389TCT11B.1.1.270.00565
noncoding27389C27389TCT11B.1.1.2740.005051
noncoding27389C27389TCT11B.1.1.2770.000759
noncoding27389C27389TCT11B.1.1.2980.000862
noncoding27389C27389TCT11B.1.1.3080.011765
noncoding27389C27389TCT11B.1.1.3160.000925
noncoding27389C27389TCT11B.1.1.3310.011628
noncoding27389C27389TCT11B.1.1.3480.000796
noncoding27389C27389TCT11B.1.1.3680.003086
noncoding27389C27389TCT11B.1.1.3690.000446
noncoding27389C27389TCT11B.1.1.3700.012658
noncoding27389C27389TCT11B.1.1.4040.015873
noncoding27389C27389TCT11B.1.1.4090.002833
noncoding27389C27389TCT11B.1.1.4120.007634
noncoding27389C27389TCT11B.1.1.4320.001266
noncoding27389C27389TCT11B.1.1.4480.002033
noncoding27389C27389TCT11B.1.1.460.004367
noncoding27389C27389TCT11B.1.1.480.002874
noncoding27389C27389TCT11B.1.1.5230.001563
noncoding27389C27389TCT11B.1.1.700.000341
noncoding27389C27389TCT11B.1.110.30.000718
noncoding27389C27389TCT11B.1.1110.001175
noncoding27389C27389TCT11B.1.1390.000733
noncoding27389C27389TCT11B.1.1700.00431
noncoding27389C27389TCT11B.1.177.110.001698
noncoding27389C27389TCT11B.1.177.150.000631
noncoding27389C27389TCT11B.1.177.180.00116
noncoding27389C27389TCT11B.1.177.430.001477
noncoding27389C27389TCT11B.1.177.460.000918
noncoding27389C27389TCT11B.1.177.50.001242
noncoding27389C27389TCT11B.1.177.600.000218
noncoding27389C27389TCT11B.1.177.840.006667
noncoding27389C27389TCT11B.1.2140.003663
noncoding27389C27389TCT11B.1.2180.005155
noncoding27389C27389TCT11B.1.2350.002519
noncoding27389C27389TCT11B.1.2410.000812
noncoding27389C27389TCT11B.1.2470.014925
noncoding27389C27389TCT11B.1.258.110.000396
noncoding27389C27389TCT11B.1.258.220.002667
noncoding27389C27389TCT11B.1.3200.001245
noncoding27389C27389TCT11B.1.3240.001605
noncoding27389C27389TCT11B.1.3290.000608
noncoding27389C27389TCT11B.1.3500.002933
noncoding27389C27389TCT11B.1.3560.001727
noncoding27389C27389TCT11B.1.36.360.000602
noncoding27389C27389TCT11B.1.36.370.002778
noncoding27389C27389TCT11B.1.3710.001122
noncoding27389C27389TCT11B.1.3810.007812
noncoding27389C27389TCT11B.1.3910.001127
noncoding27389C27389TCT11B.1.3950.007042
noncoding27389C27389TCT11B.1.4150.014286
noncoding27389C27389TCT11B.1.4220.000812
noncoding27389C27389TCT11B.1.4620.007246
noncoding27389C27389TCT11B.1.4690.00361
noncoding27389C27389TCT11B.1.5270.003704
noncoding27389C27389TCT11B.1.5400.009709
noncoding27389C27389TCT11B.1.5480.035714
noncoding27389C27389TCT11B.1.5650.00081
noncoding27389C27389TCT11B.1.575.20.004808
noncoding27389C27389TCT11B.1.5800.004065
noncoding27389C27389TCT11B.1.5880.00091
noncoding27389C27389TCT11B.1.595.10.005848
noncoding27389C27389TCT11B.1.6060.006024
noncoding27389C27389TCT11B.1.6200.000946
noncoding27389C27389TCT11B.1.621.10.000506
noncoding27389C27389TCT11B.30.000831
noncoding27389C27389TCT11B.400.000364
noncoding27389C27389TCT11B.450.003831
noncoding27389C27389TCT11C.1.20.004255
noncoding27389C27389TCT11C.160.00106
noncoding27389C27389TCT11C.30.10.006711
noncoding27389C27389TCT11C.360.000911
noncoding27389C27389TCT11D.50.004975
noncoding27389C27389TCT11P.1.10.000318
noncoding27389C27389TCT11P.70.004367
noncoding27389C27389TCT11U.20.008772
noncoding27389C27389TCT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.