CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 222 | C222- | noncoding | C | - | 822 | 822 | 1 | 222-222 |
Details of the mutation C222- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 222 | C222- | C | - | 822 | 822 | All | 0.000157 |
noncoding | 222 | C222- | C | - | 163 | 163 | B.1.1.7 | 0.000146 |
noncoding | 222 | C222- | C | - | 64 | 64 | B.1.177.81 | 0.012117 |
noncoding | 222 | C222- | C | - | 61 | 61 | AY.4 | 0.000095 |
noncoding | 222 | C222- | C | - | 41 | 41 | B.1.1.519 | 0.001628 |
noncoding | 222 | C222- | C | - | 34 | 34 | B.1.1.346 | 1 |
noncoding | 222 | C222- | C | - | 27 | 27 | B.1.2 | 0.000238 |
noncoding | 222 | C222- | C | - | 26 | 26 | B.1.617.2 | 0.000098 |
noncoding | 222 | C222- | C | - | 25 | 25 | AY.4.5 | 0.002687 |
noncoding | 222 | C222- | C | - | 22 | 22 | P.1 | 0.000347 |
noncoding | 222 | C222- | C | - | 21 | 21 | B.1.1 | 0.000381 |
noncoding | 222 | C222- | C | - | 20 | 20 | AY.43 | 0.000089 |
noncoding | 222 | C222- | C | - | 20 | 20 | AY.44 | 0.000122 |
noncoding | 222 | C222- | C | - | 16 | 16 | B.1.160 | 0.000499 |
noncoding | 222 | C222- | C | - | 14 | 14 | AY.25 | 0.000084 |
noncoding | 222 | C222- | C | - | 14 | 14 | B.1.433 | 0.044728 |
noncoding | 222 | C222- | C | - | 11 | 11 | AY.103 | 0.000068 |
noncoding | 222 | C222- | C | - | 11 | 11 | AY.119 | 0.000388 |
noncoding | 222 | C222- | C | - | 11 | 11 | B.1.429 | 0.000259 |
noncoding | 222 | C222- | C | - | 10 | 10 | B.1.177 | 0.000132 |
noncoding | 222 | C222- | C | - | 9 | 9 | AY.23 | 0.000628 |
noncoding | 222 | C222- | C | - | 9 | 9 | AY.3 | 0.00009 |
noncoding | 222 | C222- | C | - | 9 | 9 | B.1 | 0.000082 |
noncoding | 222 | C222- | C | - | 8 | 8 | B.1.258 | 0.000532 |
noncoding | 222 | C222- | C | - | 6 | 6 | AY.113 | 0.000854 |
noncoding | 222 | C222- | C | - | 6 | 6 | AY.33 | 0.000401 |
noncoding | 222 | C222- | C | - | 6 | 6 | B.1.526 | 0.000141 |
noncoding | 222 | C222- | C | - | 5 | 5 | AY.26 | 0.000142 |
noncoding | 222 | C222- | C | - | 5 | 5 | AY.47 | 0.000156 |
noncoding | 222 | C222- | C | - | 5 | 5 | B.1.206 | 0.004078 |
noncoding | 222 | C222- | C | - | 4 | 4 | AY.100 | 0.000184 |
noncoding | 222 | C222- | C | - | 4 | 4 | AY.14 | 0.000352 |
noncoding | 222 | C222- | C | - | 4 | 4 | AY.46.4 | 0.000658 |
noncoding | 222 | C222- | C | - | 4 | 4 | B.1.1.33 | 0.001684 |
noncoding | 222 | C222- | C | - | 4 | 4 | B.1.1.348 | 0.003185 |
noncoding | 222 | C222- | C | - | 4 | 4 | N.5 | 0.007067 |
noncoding | 222 | C222- | C | - | 3 | 3 | AY.34.1 | 0.00153 |
noncoding | 222 | C222- | C | - | 3 | 3 | AY.39 | 0.000074 |
noncoding | 222 | C222- | C | - | 3 | 3 | B.1.422 | 0.002437 |
noncoding | 222 | C222- | C | - | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.118 | 0.000125 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.12 | 0.000632 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.20 | 0.000078 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.4.2 | 0.000043 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.4.4 | 0.000818 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.54 | 0.000191 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.68 | 0.000547 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.73 | 0.001331 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.9.1 | 0.000167 |
noncoding | 222 | C222- | C | - | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.177.18 | 0.00232 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.177.21 | 0.000153 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.3 | 0.005236 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.36 | 0.000292 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.36.29 | 0.001035 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.404 | 0.002604 |
noncoding | 222 | C222- | C | - | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 222 | C222- | C | - | 2 | 2 | N.6 | 0.014184 |
noncoding | 222 | C222- | C | - | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 222 | C222- | C | - | 2 | 2 | P.2 | 0.000373 |
noncoding | 222 | C222- | C | - | 2 | 2 | Z.1 | 0.00578 |
noncoding | 222 | C222- | C | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 222 | C222- | C | - | 1 | 1 | A.2.2 | 0.001689 |
noncoding | 222 | C222- | C | - | 1 | 1 | AE.8 | 0.000489 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.116 | 0.000287 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.116.1 | 0.000311 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.38 | 0.000499 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.41 | 0.000294 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.46 | 0.000104 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.46.5 | 0.000198 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.5 | 0.000021 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.59 | 0.00053 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.6 | 0.000041 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.60 | 0.000938 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.9 | 0.000068 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.95 | 0.000761 |
noncoding | 222 | C222- | C | - | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.232 | 0.001815 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.311 | 0.000358 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.322 | 0.008772 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.353 | 0.020833 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.448 | 0.002033 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.1.50 | 0.000679 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.160.23 | 0.004831 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.164 | 0.014925 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.36.18 | 0.00042 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.420 | 0.010417 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.1.541 | 0.004425 |
noncoding | 222 | C222- | C | - | 1 | 1 | B.3 | 0.000831 |
noncoding | 222 | C222- | C | - | 1 | 1 | C.1 | 0.002392 |
noncoding | 222 | C222- | C | - | 1 | 1 | C.35 | 0.000774 |
noncoding | 222 | C222- | C | - | 1 | 1 | N.4 | 0.004255 |
noncoding | 222 | C222- | C | - | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 222 | C222- | C | - | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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