CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = C19T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding19C19TnoncodingCT49444944119-19

Details of the mutation C19T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding19C19TCT49444944All0.000946
noncoding19C19TCT29162916B.1.1.70.00261
noncoding19C19TCT10611061B.1.619.10.680564
noncoding19C19TCT129129Q.10.016296
noncoding19C19TCT112112B.1.3510.003329
noncoding19C19TCT5959B.1.258.170.006134
noncoding19C19TCT5353B.1.177.600.011577
noncoding19C19TCT4949B.1.10.000889
noncoding19C19TCT4343B.1.20.000379
noncoding19C19TCT3232P.10.000504
noncoding19C19TCT2727B.1.2580.001797
noncoding19C19TCT2323B.10.000211
noncoding19C19TCT2222B.1.1770.00029
noncoding19C19TCT2121B.1.1.4530.177966
noncoding19C19TCT2121B.1.1.5190.000834
noncoding19C19TCT2020AY.430.000089
noncoding19C19TCT1818B.1.2210.001279
noncoding19C19TCT1717B.1.617.20.000064
noncoding19C19TCT1414B.1.1600.000437
noncoding19C19TCT1313B.1.1.3740.030879
noncoding19C19TCT1212U.30.046332
noncoding19C19TCT1111B.1.177.810.002083
noncoding19C19TCT1010B.1.4290.000235
noncoding19C19TCT88B.1.6190.006969
noncoding19C19TCT77B.1.177.790.016393
noncoding19C19TCT77B.1.5250.000792
noncoding19C19TCT66B.1.1.700.002046
noncoding19C19TCT66B.1.177.460.00551
noncoding19C19TCT55AY.250.00003
noncoding19C19TCT55AY.40.000008
noncoding19C19TCT55AY.680.001369
noncoding19C19TCT55AY.690.000933
noncoding19C19TCT55B.1.177.860.000917
noncoding19C19TCT55B.1.4270.000252
noncoding19C19TCT55B.1.6200.00473
noncoding19C19TCT55P.1.140.000239
noncoding19C19TCT440.222222
noncoding19C19TCT44AY.1020.000106
noncoding19C19TCT44AY.300.001583
noncoding19C19TCT44B.1.1.1890.006051
noncoding19C19TCT44B.1.1.280.001245
noncoding19C19TCT44B.1.36.180.001681
noncoding19C19TCT44C.36.30.002269
noncoding19C19TCT44P.1.10.001271
noncoding19C19TCT44P.20.000747
noncoding19C19TCT33AY.1030.000019
noncoding19C19TCT33AY.440.000018
noncoding19C19TCT33AY.50.000062
noncoding19C19TCT33B.1.1.1410.006036
noncoding19C19TCT33B.1.1.2940.003797
noncoding19C19TCT33B.1.1.330.001263
noncoding19C19TCT33B.1.177.570.000843
noncoding19C19TCT33B.1.177.820.001432
noncoding19C19TCT33B.1.177.830.004444
noncoding19C19TCT33B.1.36.160.004274
noncoding19C19TCT33B.1.5260.000071
noncoding19C19TCT33Q.40.001364
noncoding19C19TCT22A0.000774
noncoding19C19TCT22AY.790.002421
noncoding19C19TCT22AY.9.20.000073
noncoding19C19TCT22AY.98.10.000097
noncoding19C19TCT22B.1.1.2430.008163
noncoding19C19TCT22B.1.1.2840.000215
noncoding19C19TCT22B.1.1.3060.000877
noncoding19C19TCT22B.1.1.3170.000823
noncoding19C19TCT22B.1.1.3180.000604
noncoding19C19TCT22B.1.1.370.000386
noncoding19C19TCT22B.1.1.390.001019
noncoding19C19TCT22B.1.1.3970.004505
noncoding19C19TCT22B.1.1.460.008734
noncoding19C19TCT22B.1.110.30.001437
noncoding19C19TCT22B.1.177.160.001329
noncoding19C19TCT22B.1.177.410.005
noncoding19C19TCT22B.1.177.620.002384
noncoding19C19TCT22B.1.2430.000139
noncoding19C19TCT22B.1.36.80.002
noncoding19C19TCT22B.1.5400.019417
noncoding19C19TCT22B.1.5960.000174
noncoding19C19TCT22B.40.004415
noncoding19C19TCT22C.350.001548
noncoding19C19TCT22C.360.001821
noncoding19C19TCT22R.10.00018
noncoding19C19TCT22S.10.009901
noncoding19C19TCT11A.270.001656
noncoding19C19TCT11AD.20.000219
noncoding19C19TCT11AY.10.000396
noncoding19C19TCT11AY.1170.000085
noncoding19C19TCT11AY.230.00007
noncoding19C19TCT11AY.260.000028
noncoding19C19TCT11AY.30.00001
noncoding19C19TCT11AY.3.10.000085
noncoding19C19TCT11AY.340.000097
noncoding19C19TCT11AY.390.000025
noncoding19C19TCT11AY.4.2.10.000149
noncoding19C19TCT11AY.4.40.000409
noncoding19C19TCT11AY.420.00004
noncoding19C19TCT11AY.590.00053
noncoding19C19TCT11AY.7.20.000559
noncoding19C19TCT11AY.710.000475
noncoding19C19TCT11AY.750.000056
noncoding19C19TCT11AY.990.001049
noncoding19C19TCT11AY.99.20.000092
noncoding19C19TCT11AZ.20.000821
noncoding19C19TCT11AZ.50.003509
noncoding19C19TCT11B0.000128
noncoding19C19TCT11B.1.1.1530.001095
noncoding19C19TCT11B.1.1.1920.002309
noncoding19C19TCT11B.1.1.2020.076923
noncoding19C19TCT11B.1.1.2190.005
noncoding19C19TCT11B.1.1.2320.001815
noncoding19C19TCT11B.1.1.2340.012048
noncoding19C19TCT11B.1.1.2820.011628
noncoding19C19TCT11B.1.1.3190.017544
noncoding19C19TCT11B.1.1.3260.001761
noncoding19C19TCT11B.1.1.4860.001577
noncoding19C19TCT11B.1.1.500.000679
noncoding19C19TCT11B.1.1.580.005376
noncoding19C19TCT11B.1.177.210.000076
noncoding19C19TCT11B.1.177.350.000691
noncoding19C19TCT11B.1.214.20.0006
noncoding19C19TCT11B.1.221.40.004167
noncoding19C19TCT11B.1.2340.000132
noncoding19C19TCT11B.1.2400.000216
noncoding19C19TCT11B.1.258.140.00098
noncoding19C19TCT11B.1.258.30.001675
noncoding19C19TCT11B.1.351.20.000303
noncoding19C19TCT11B.1.360.000146
noncoding19C19TCT11B.1.36.310.001751
noncoding19C19TCT11B.1.36.350.002604
noncoding19C19TCT11B.1.3690.000285
noncoding19C19TCT11B.1.466.20.000391
noncoding19C19TCT11B.1.4970.000315
noncoding19C19TCT11B.1.5090.000866
noncoding19C19TCT11B.1.5650.00081
noncoding19C19TCT11B.1.5680.001111
noncoding19C19TCT11B.1.5760.000907
noncoding19C19TCT11B.1.5770.000687
noncoding19C19TCT11B.1.6180.004032
noncoding19C19TCT11B.1.6360.006711
noncoding19C19TCT11B.4.80.071429
noncoding19C19TCT11B.6.60.000889
noncoding19C19TCT11C.370.000116
noncoding19C19TCT11N.90.005952
noncoding19C19TCT11P.1.120.000484
noncoding19C19TCT11P.1.170.000162
noncoding19C19TCT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.