CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 19 | C19G | noncoding | C | G | 1718 | 1718 | 1 | 19-19 |
Details of the mutation C19G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 19 | C19G | C | G | 1718 | 1718 | All | 0.000329 |
noncoding | 19 | C19G | C | G | 1073 | 1073 | B.1.1.7 | 0.000961 |
noncoding | 19 | C19G | C | G | 58 | 58 | AY.43 | 0.000257 |
noncoding | 19 | C19G | C | G | 46 | 46 | B.1.351 | 0.001367 |
noncoding | 19 | C19G | C | G | 43 | 43 | Q.1 | 0.005432 |
noncoding | 19 | C19G | C | G | 41 | 41 | B.1 | 0.000376 |
noncoding | 19 | C19G | C | G | 38 | 38 | B.1.2 | 0.000335 |
noncoding | 19 | C19G | C | G | 22 | 22 | B.1.177.60 | 0.004806 |
noncoding | 19 | C19G | C | G | 21 | 21 | B.1.1 | 0.000381 |
noncoding | 19 | C19G | C | G | 21 | 21 | B.1.258.17 | 0.002183 |
noncoding | 19 | C19G | C | G | 18 | 18 | B.1.1.291 | 0.013363 |
noncoding | 19 | C19G | C | G | 17 | 17 | B.1.169 | 0.253731 |
noncoding | 19 | C19G | C | G | 17 | 17 | B.1.258 | 0.001131 |
noncoding | 19 | C19G | C | G | 15 | 15 | B.1.617.2 | 0.000056 |
noncoding | 19 | C19G | C | G | 14 | 14 | B.1.160 | 0.000437 |
noncoding | 19 | C19G | C | G | 11 | 11 | B.1.177 | 0.000145 |
noncoding | 19 | C19G | C | G | 11 | 11 | B.1.221 | 0.000781 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.240 | 0.002156 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.333 | 0.105263 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.446 | 0.2 |
noncoding | 19 | C19G | C | G | 9 | 9 | A.1 | 0.002537 |
noncoding | 19 | C19G | C | G | 7 | 7 | B.1.177.81 | 0.001325 |
noncoding | 19 | C19G | C | G | 7 | 7 | B.1.324 | 0.011236 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.1.192 | 0.013857 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.243 | 0.000418 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.371 | 0.006734 |
noncoding | 19 | C19G | C | G | 5 | 5 | AY.3 | 0.00005 |
noncoding | 19 | C19G | C | G | 5 | 5 | AY.44 | 0.00003 |
noncoding | 19 | C19G | C | G | 5 | 5 | B.1.427 | 0.000252 |
noncoding | 19 | C19G | C | G | 5 | 5 | P.1 | 0.000079 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.1.251 | 0.031746 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.1.519 | 0.000159 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.139 | 0.002933 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.621 | 0.000354 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.25 | 0.000018 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.30 | 0.001187 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.85 | 0.001282 |
noncoding | 19 | C19G | C | G | 3 | 3 | B | 0.000383 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.1 | 0.00098 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.52 | 0.036585 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.177.86 | 0.00055 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.341 | 0.068182 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.575 | 0.00091 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 19 | C19G | C | G | 2 | 2 | AY.103 | 0.000012 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.141 | 0.004024 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.30 | 0.153846 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.429 | 0.009217 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.126 | 0.002551 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.177.62 | 0.002384 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.177.79 | 0.004684 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.234 | 0.000264 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.399 | 0.003868 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.565 | 0.001621 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.594 | 0.0625 |
noncoding | 19 | C19G | C | G | 2 | 2 | C.35 | 0.001548 |
noncoding | 19 | C19G | C | G | 2 | 2 | P.2 | 0.000373 |
noncoding | 19 | C19G | C | G | 2 | 2 | Q.4 | 0.00091 |
noncoding | 19 | C19G | C | G | 2 | 2 | R.1 | 0.00018 |
noncoding | 19 | C19G | C | G | 2 | 2 | U.3 | 0.007722 |
noncoding | 19 | C19G | C | G | 1 | 1 | A | 0.000387 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.10 | 0.00053 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.111 | 0.000183 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.117 | 0.000085 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.20 | 0.000039 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.34 | 0.000097 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.46 | 0.000104 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.59 | 0.00053 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 19 | C19G | C | G | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.162 | 0.029412 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.187 | 0.00885 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.204 | 0.00304 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.219 | 0.005 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.228 | 0.003049 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.243 | 0.004082 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.26 | 0.005236 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.301 | 0.001179 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.523 | 0.001563 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.98 | 0.018519 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.160.16 | 0.000929 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.41 | 0.0025 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.301 | 0.005917 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.426 | 0.001009 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.493 | 0.025641 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.500 | 0.052632 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.526 | 0.000024 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.9.4 | 0.006135 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.4 | 0.002208 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.4.4 | 0.018868 |
noncoding | 19 | C19G | C | G | 1 | 1 | C.36 | 0.000911 |
noncoding | 19 | C19G | C | G | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 19 | C19G | C | G | 1 | 1 | N.1 | 0.016949 |
noncoding | 19 | C19G | C | G | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 19 | C19G | C | G | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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