CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : Mut = A29776-
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29776 | A29776- | noncoding | A | - | 8988 | 8988 | 1 | 29776-29776 |
Details of the mutation A29776- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29776 | A29776- | A | - | 8988 | 8988 | All | 0.001719 |
| noncoding | 29776 | A29776- | A | - | 3707 | 3707 | B.1.525 | 0.419486 |
| noncoding | 29776 | A29776- | A | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
| noncoding | 29776 | A29776- | A | - | 1518 | 1518 | B.1.1.7 | 0.001359 |
| noncoding | 29776 | A29776- | A | - | 203 | 203 | B.1.2 | 0.001787 |
| noncoding | 29776 | A29776- | A | - | 150 | 150 | AY.4 | 0.000233 |
| noncoding | 29776 | A29776- | A | - | 124 | 124 | B.1.466.1 | 0.892086 |
| noncoding | 29776 | A29776- | A | - | 115 | 115 | B.1.617.2 | 0.000433 |
| noncoding | 29776 | A29776- | A | - | 99 | 99 | AY.103 | 0.000615 |
| noncoding | 29776 | A29776- | A | - | 85 | 85 | AY.47 | 0.002644 |
| noncoding | 29776 | A29776- | A | - | 77 | 77 | B.1.177 | 0.001014 |
| noncoding | 29776 | A29776- | A | - | 75 | 75 | B.1.351 | 0.002229 |
| noncoding | 29776 | A29776- | A | - | 73 | 73 | AY.25 | 0.000439 |
| noncoding | 29776 | A29776- | A | - | 60 | 60 | AY.3 | 0.000597 |
| noncoding | 29776 | A29776- | A | - | 54 | 54 | B.1 | 0.000495 |
| noncoding | 29776 | A29776- | A | - | 52 | 52 | AY.43 | 0.00023 |
| noncoding | 29776 | A29776- | A | - | 43 | 43 | B.1.160 | 0.001341 |
| noncoding | 29776 | A29776- | A | - | 38 | 38 | AY.44 | 0.000231 |
| noncoding | 29776 | A29776- | A | - | 36 | 36 | B.1.1.351 | 0.100559 |
| noncoding | 29776 | A29776- | A | - | 34 | 34 | B.1.1 | 0.000617 |
| noncoding | 29776 | A29776- | A | - | 28 | 28 | AY.29 | 0.000442 |
| noncoding | 29776 | A29776- | A | - | 22 | 22 | B.1.1.368 | 0.067901 |
| noncoding | 29776 | A29776- | A | - | 22 | 22 | B.1.1.519 | 0.000874 |
| noncoding | 29776 | A29776- | A | - | 19 | 19 | AY.92 | 0.005458 |
| noncoding | 29776 | A29776- | A | - | 17 | 17 | B.1.177.56 | 0.011348 |
| noncoding | 29776 | A29776- | A | - | 17 | 17 | B.1.258 | 0.001131 |
| noncoding | 29776 | A29776- | A | - | 17 | 17 | P.1 | 0.000268 |
| noncoding | 29776 | A29776- | A | - | 15 | 15 | AY.85 | 0.006408 |
| noncoding | 29776 | A29776- | A | - | 13 | 13 | AY.42 | 0.000523 |
| noncoding | 29776 | A29776- | A | - | 13 | 13 | AY.6 | 0.000535 |
| noncoding | 29776 | A29776- | A | - | 13 | 13 | AY.61 | 0.001362 |
| noncoding | 29776 | A29776- | A | - | 13 | 13 | B.1.221 | 0.000923 |
| noncoding | 29776 | A29776- | A | - | 12 | 12 | B.1.1.222 | 0.002448 |
| noncoding | 29776 | A29776- | A | - | 11 | 11 | AY.100 | 0.000506 |
| noncoding | 29776 | A29776- | A | - | 11 | 11 | B.1.177.86 | 0.002018 |
| noncoding | 29776 | A29776- | A | - | 10 | 10 | AY.119 | 0.000353 |
| noncoding | 29776 | A29776- | A | - | 10 | 10 | AY.26 | 0.000283 |
| noncoding | 29776 | A29776- | A | - | 10 | 10 | AY.4.2 | 0.000217 |
| noncoding | 29776 | A29776- | A | - | 10 | 10 | AY.75.1 | 0.001803 |
| noncoding | 29776 | A29776- | A | - | 9 | 9 | AY.45 | 0.001095 |
| noncoding | 29776 | A29776- | A | - | 9 | 9 | B.1.160.14 | 0.019068 |
| noncoding | 29776 | A29776- | A | - | 9 | 9 | B.1.243 | 0.000626 |
| noncoding | 29776 | A29776- | A | - | 9 | 9 | P.1.17 | 0.001456 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | AY.5 | 0.000165 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | AY.67 | 0.003714 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | AY.74 | 0.000925 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | AY.98.1 | 0.000387 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | B.1.1.317 | 0.003294 |
| noncoding | 29776 | A29776- | A | - | 8 | 8 | C.37.1 | 0.020942 |
| noncoding | 29776 | A29776- | A | - | 7 | 7 | AY.39 | 0.000173 |
| noncoding | 29776 | A29776- | A | - | 7 | 7 | AY.46.4 | 0.001152 |
| noncoding | 29776 | A29776- | A | - | 7 | 7 | B.1.36.22 | 0.008454 |
| noncoding | 29776 | A29776- | A | - | 7 | 7 | P.1.16 | 0.002619 |
| noncoding | 29776 | A29776- | A | - | 6 | 6 | AY.102 | 0.000159 |
| noncoding | 29776 | A29776- | A | - | 6 | 6 | AY.118 | 0.000376 |
| noncoding | 29776 | A29776- | A | - | 6 | 6 | AY.120 | 0.000223 |
| noncoding | 29776 | A29776- | A | - | 6 | 6 | AY.34 | 0.000582 |
| noncoding | 29776 | A29776- | A | - | 6 | 6 | B.1.429 | 0.000141 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | AY.117 | 0.000423 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | AY.23 | 0.000349 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | AY.54 | 0.000477 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | AY.75 | 0.00028 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | B.1.1.214 | 0.000277 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | B.1.36.31 | 0.008757 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | B.1.619 | 0.004355 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | C.1 | 0.011962 |
| noncoding | 29776 | A29776- | A | - | 5 | 5 | Q.1 | 0.000632 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | AY.95 | 0.003044 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | AY.99.2 | 0.000369 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | B | 0.000511 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | B.1.1.288 | 0.007663 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | D.2 | 0.0003 |
| noncoding | 29776 | A29776- | A | - | 4 | 4 | P.1.12 | 0.001936 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.109 | 0.002219 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.14 | 0.000264 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.20 | 0.000117 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.3.1 | 0.000256 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.30 | 0.001187 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.35 | 0.000699 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.70 | 0.000626 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.79 | 0.003632 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | AY.9.2 | 0.00011 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.1.236 | 0.02069 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.1.33 | 0.001263 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.1.428 | 0.028302 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.1.46 | 0.0131 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.258.17 | 0.000312 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.526 | 0.000071 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.595 | 0.000783 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | B.1.621 | 0.000266 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | C.36 | 0.002732 |
| noncoding | 29776 | A29776- | A | - | 3 | 3 | P.1.15 | 0.000697 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | A | 0.000774 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.110 | 0.000225 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.12 | 0.000632 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.4.2.1 | 0.000298 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.40 | 0.001929 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.46 | 0.000208 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.46.3 | 0.001867 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.48 | 0.00093 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.5.3 | 0.000675 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.62 | 0.000871 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | AY.84 | 0.000875 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.1 | 0.000653 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.166 | 0.066667 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.279 | 0.002242 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.28 | 0.000622 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.294 | 0.002532 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.348 | 0.001592 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.37 | 0.000386 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.1.523 | 0.003125 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.206 | 0.001631 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.210 | 0.004264 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.298 | 0.004228 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.400 | 0.000858 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.460 | 0.035714 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.596 | 0.000174 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.1.637 | 0.000146 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | B.39 | 0.004662 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | C.3 | 0.015267 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | C.38 | 0.016129 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | P.1.1 | 0.000635 |
| noncoding | 29776 | A29776- | A | - | 2 | 2 | P.1.7 | 0.000639 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AK.2 | 0.045455 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.106 | 0.000335 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.113 | 0.000142 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.114 | 0.000231 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.29.1 | 0.000221 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.33 | 0.000067 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.36 | 0.000148 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.39.1 | 0.00004 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.46.6 | 0.000072 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.59 | 0.00053 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.7 | 0.000196 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.80 | 0.001129 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.81 | 0.001992 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.87 | 0.000833 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.9 | 0.000068 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.9.1 | 0.000084 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | AY.98 | 0.000079 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.10 | 0.001115 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.161 | 0.003534 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.170 | 0.001247 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.218 | 0.007692 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.221 | 0.010101 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.229 | 0.005747 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.25 | 0.000569 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.277 | 0.000759 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.306 | 0.000438 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.337 | 0.003597 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.39 | 0.00051 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.413 | 0.006897 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.432 | 0.001266 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.526 | 0.003546 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.528 | 0.004808 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.54 | 0.003021 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.1.99 | 0.02381 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.110 | 0.004525 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.111 | 0.001175 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.160.33 | 0.004425 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.11 | 0.001698 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.12 | 0.000152 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.32 | 0.00135 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.33 | 0.001645 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.42 | 0.000894 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.44 | 0.000519 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.6 | 0.000977 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.75 | 0.001041 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.79 | 0.002342 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.177.81 | 0.000189 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.222 | 0.001692 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.234 | 0.000132 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.240 | 0.000216 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.260 | 0.003344 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.351.2 | 0.000303 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.36 | 0.000146 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.36.8 | 0.001 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.362 | 0.001541 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.416 | 0.001269 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.462 | 0.007246 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.576 | 0.000907 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.617.3 | 0.002985 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.630 | 0.005236 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.1.9.5 | 0.005682 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.55 | 0.00295 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | B.6 | 0.00091 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | C.37 | 0.000116 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | N.4 | 0.004255 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | P.1.10 | 0.000269 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | P.2 | 0.000187 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | Q.2 | 0.000613 |
| noncoding | 29776 | A29776- | A | - | 1 | 1 | R.1 | 0.00009 |
 |
 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|