CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = A29770-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29770	A29770-		noncoding	A	-	13138	13138	1	29770-29770

Details of the mutation A29770- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29770	A29770-	A	-	13138	13138	All	0.002513
noncoding	29770	A29770-	A	-	3717	3717	B.1.525	0.420618
noncoding	29770	A29770-	A	-	2168	2168	B.1.1.7	0.001941
noncoding	29770	A29770-	A	-	1762	1762	B.1.1.311	0.631089
noncoding	29770	A29770-	A	-	1330	1330	AY.4	0.00207
noncoding	29770	A29770-	A	-	794	794	AY.38	0.396405
noncoding	29770	A29770-	A	-	268	268	AY.5	0.005534
noncoding	29770	A29770-	A	-	248	248	B.1.2	0.002184
noncoding	29770	A29770-	A	-	185	185	B.1.351	0.005499
noncoding	29770	A29770-	A	-	175	175	B.1.617.2	0.000659
noncoding	29770	A29770-	A	-	142	142	AY.103	0.000882
noncoding	29770	A29770-	A	-	139	139	B.1	0.001273
noncoding	29770	A29770-	A	-	138	138	B.1.177	0.001817
noncoding	29770	A29770-	A	-	125	125	B.1.466.1	0.899281
noncoding	29770	A29770-	A	-	96	96	AY.43	0.000425
noncoding	29770	A29770-	A	-	87	87	AY.25	0.000523
noncoding	29770	A29770-	A	-	87	87	AY.47	0.002706
noncoding	29770	A29770-	A	-	80	80	B.1.160	0.002495
noncoding	29770	A29770-	A	-	80	80	B.1.221	0.005683
noncoding	29770	A29770-	A	-	67	67	B.1.1	0.001215
noncoding	29770	A29770-	A	-	66	66	AY.3	0.000656
noncoding	29770	A29770-	A	-	59	59	AY.111	0.010806
noncoding	29770	A29770-	A	-	46	46	AY.44	0.00028
noncoding	29770	A29770-	A	-	45	45	B.1.243	0.003131
noncoding	29770	A29770-	A	-	44	44	B.1.369	0.01255
noncoding	29770	A29770-	A	-	42	42	P.1	0.000662
noncoding	29770	A29770-	A	-	41	41	C.37	0.004759
noncoding	29770	A29770-	A	-	37	37	AY.29	0.000584
noncoding	29770	A29770-	A	-	36	36	B.1.1.351	0.100559
noncoding	29770	A29770-	A	-	33	33	AY.39	0.000815
noncoding	29770	A29770-	A	-	23	23	AY.102	0.00061
noncoding	29770	A29770-	A	-	22	22	B.1.1.368	0.067901
noncoding	29770	A29770-	A	-	22	22	B.1.258	0.001464
noncoding	29770	A29770-	A	-	21	21	B.1.305	0.045161
noncoding	29770	A29770-	A	-	19	19	AY.42	0.000764
noncoding	29770	A29770-	A	-	19	19	AY.92	0.005458
noncoding	29770	A29770-	A	-	17	17	AY.5.4	0.004704
noncoding	29770	A29770-	A	-	17	17	B.1.177.56	0.011348
noncoding	29770	A29770-	A	-	16	16	AY.26	0.000453
noncoding	29770	A29770-	A	-	16	16	AY.6	0.000658
noncoding	29770	A29770-	A	-	14	14	AY.61	0.001467
noncoding	29770	A29770-	A	-	14	14	B.1.404	0.018229
noncoding	29770	A29770-	A	-	13	13	AY.119	0.000459
noncoding	29770	A29770-	A	-	13	13	AY.75.1	0.002344
noncoding	29770	A29770-	A	-	13	13	B.1.1.222	0.002652
noncoding	29770	A29770-	A	-	13	13	B.1.1.420	0.013078
noncoding	29770	A29770-	A	-	13	13	B.1.526	0.000306
noncoding	29770	A29770-	A	-	13	13	P.1.16	0.004863
noncoding	29770	A29770-	A	-	12	12	AY.118	0.000752
noncoding	29770	A29770-	A	-	12	12	AY.98.1	0.000581
noncoding	29770	A29770-	A	-	12	12	B.1.1.28	0.003735
noncoding	29770	A29770-	A	-	12	12	B.1.429	0.000282
noncoding	29770	A29770-	A	-	11	11	AY.100	0.000506
noncoding	29770	A29770-	A	-	11	11	AY.4.2	0.000239
noncoding	29770	A29770-	A	-	11	11	AY.75	0.000616
noncoding	29770	A29770-	A	-	11	11	B.1.177.86	0.002018
noncoding	29770	A29770-	A	-	11	11	B.1.36	0.001605
noncoding	29770	A29770-	A	-	10	10	AY.74	0.001156
noncoding	29770	A29770-	A	-	10	10	AY.9	0.000676
noncoding	29770	A29770-	A	-	10	10	B.1.596	0.000871
noncoding	29770	A29770-	A	-	9	9	B.1.160.14	0.019068
noncoding	29770	A29770-	A	-	9	9	C.35	0.006966
noncoding	29770	A29770-	A	-	8	8	AY.117	0.000676
noncoding	29770	A29770-	A	-	8	8	AY.45	0.000973
noncoding	29770	A29770-	A	-	8	8	AY.67	0.003714
noncoding	29770	A29770-	A	-	8	8	AY.85	0.003417
noncoding	29770	A29770-	A	-	8	8	B.1.1.303	0.022099
noncoding	29770	A29770-	A	-	8	8	B.1.1.317	0.003294
noncoding	29770	A29770-	A	-	8	8	B.1.258.20	0.126984
noncoding	29770	A29770-	A	-	8	8	B.1.36.29	0.004139
noncoding	29770	A29770-	A	-	8	8	P.1.17	0.001294
noncoding	29770	A29770-	A	-	7	7	AY.34	0.000679
noncoding	29770	A29770-	A	-	7	7	AY.46.4	0.001152
noncoding	29770	A29770-	A	-	7	7	B.1.1.519	0.000278
noncoding	29770	A29770-	A	-	7	7	B.1.234	0.000924
noncoding	29770	A29770-	A	-	7	7	B.1.240	0.001509
noncoding	29770	A29770-	A	-	7	7	B.1.36.22	0.008454
noncoding	29770	A29770-	A	-	7	7	B.1.621	0.00062
noncoding	29770	A29770-	A	-	6	6	AY.23	0.000418
noncoding	29770	A29770-	A	-	6	6	AY.46	0.000624
noncoding	29770	A29770-	A	-	6	6	AY.98	0.000474
noncoding	29770	A29770-	A	-	6	6	B.1.1.214	0.000333
noncoding	29770	A29770-	A	-	6	6	B.1.1.318	0.001811
noncoding	29770	A29770-	A	-	6	6	B.1.36.31	0.010508
noncoding	29770	A29770-	A	-	6	6	Q.1	0.000758
noncoding	29770	A29770-	A	-	5	5	AY.114	0.001156
noncoding	29770	A29770-	A	-	5	5	AY.120	0.000186
noncoding	29770	A29770-	A	-	5	5	AY.14	0.00044
noncoding	29770	A29770-	A	-	5	5	AY.20	0.000194
noncoding	29770	A29770-	A	-	5	5	AY.54	0.000477
noncoding	29770	A29770-	A	-	5	5	AY.9.2	0.000184
noncoding	29770	A29770-	A	-	5	5	B	0.000639
noncoding	29770	A29770-	A	-	5	5	B.1.1.284	0.000537
noncoding	29770	A29770-	A	-	5	5	B.1.258.17	0.00052
noncoding	29770	A29770-	A	-	5	5	B.1.575	0.001517
noncoding	29770	A29770-	A	-	5	5	B.1.619	0.004355
noncoding	29770	A29770-	A	-	5	5	P.1.12	0.00242
noncoding	29770	A29770-	A	-	4	4	AY.12	0.001264
noncoding	29770	A29770-	A	-	4	4	AY.69	0.000747
noncoding	29770	A29770-	A	-	4	4	AY.95	0.003044
noncoding	29770	A29770-	A	-	4	4	B.1.1.1	0.001307
noncoding	29770	A29770-	A	-	4	4	B.1.1.170	0.004988
noncoding	29770	A29770-	A	-	4	4	B.1.1.288	0.007663
noncoding	29770	A29770-	A	-	4	4	B.1.1.33	0.001684
noncoding	29770	A29770-	A	-	4	4	B.1.1.464	0.005891
noncoding	29770	A29770-	A	-	4	4	B.1.1.528	0.019231
noncoding	29770	A29770-	A	-	4	4	B.1.104	0.01476
noncoding	29770	A29770-	A	-	4	4	B.1.108	0.023256
noncoding	29770	A29770-	A	-	4	4	B.1.160.33	0.017699
noncoding	29770	A29770-	A	-	4	4	B.1.427	0.000202
noncoding	29770	A29770-	A	-	4	4	B.1.609	0.001918
noncoding	29770	A29770-	A	-	4	4	C.1	0.009569
noncoding	29770	A29770-	A	-	4	4	C.37.1	0.010471
noncoding	29770	A29770-	A	-	4	4	D.2	0.0003
noncoding	29770	A29770-	A	-	4	4	P.1.14	0.000191
noncoding	29770	A29770-	A	-	3	3	AY.109	0.002219
noncoding	29770	A29770-	A	-	3	3	AY.3.1	0.000256
noncoding	29770	A29770-	A	-	3	3	AY.30	0.001187
noncoding	29770	A29770-	A	-	3	3	AY.59	0.001589
noncoding	29770	A29770-	A	-	3	3	AY.65	0.001599
noncoding	29770	A29770-	A	-	3	3	AY.70	0.000626
noncoding	29770	A29770-	A	-	3	3	AY.84	0.001312
noncoding	29770	A29770-	A	-	3	3	AY.99.2	0.000276
noncoding	29770	A29770-	A	-	3	3	B.1.1.236	0.02069
noncoding	29770	A29770-	A	-	3	3	B.1.1.428	0.028302
noncoding	29770	A29770-	A	-	3	3	B.1.1.432	0.003797
noncoding	29770	A29770-	A	-	3	3	B.1.1.46	0.0131
noncoding	29770	A29770-	A	-	3	3	B.1.177.72	0.010169
noncoding	29770	A29770-	A	-	3	3	B.1.210	0.006397
noncoding	29770	A29770-	A	-	3	3	B.1.214.2	0.001799
noncoding	29770	A29770-	A	-	3	3	B.1.298	0.006342
noncoding	29770	A29770-	A	-	3	3	B.1.36.16	0.004274
noncoding	29770	A29770-	A	-	3	3	B.1.416.1	0.004687
noncoding	29770	A29770-	A	-	3	3	B.1.582	0.001472
noncoding	29770	A29770-	A	-	3	3	B.1.595	0.000783
noncoding	29770	A29770-	A	-	3	3	B.1.637	0.000219
noncoding	29770	A29770-	A	-	3	3	B.1.9.4	0.018405
noncoding	29770	A29770-	A	-	3	3	C.36	0.002732
noncoding	29770	A29770-	A	-	3	3	P.1.15	0.000697
noncoding	29770	A29770-	A	-	2	2	A	0.000774
noncoding	29770	A29770-	A	-	2	2	A.2.5	0.000998
noncoding	29770	A29770-	A	-	2	2	AY.110	0.000225
noncoding	29770	A29770-	A	-	2	2	AY.33	0.000134
noncoding	29770	A29770-	A	-	2	2	AY.35	0.000466
noncoding	29770	A29770-	A	-	2	2	AY.40	0.001929
noncoding	29770	A29770-	A	-	2	2	AY.46.3	0.001867
noncoding	29770	A29770-	A	-	2	2	AY.46.6	0.000144
noncoding	29770	A29770-	A	-	2	2	AY.5.3	0.000675
noncoding	29770	A29770-	A	-	2	2	AY.56	0.00321
noncoding	29770	A29770-	A	-	2	2	AY.62	0.000871
noncoding	29770	A29770-	A	-	2	2	AZ.2	0.001642
noncoding	29770	A29770-	A	-	2	2	B.1.1.25	0.001137
noncoding	29770	A29770-	A	-	2	2	B.1.1.279	0.002242
noncoding	29770	A29770-	A	-	2	2	B.1.1.294	0.002532
noncoding	29770	A29770-	A	-	2	2	B.1.1.298	0.001724
noncoding	29770	A29770-	A	-	2	2	B.1.1.306	0.000877
noncoding	29770	A29770-	A	-	2	2	B.1.1.348	0.001592
noncoding	29770	A29770-	A	-	2	2	B.1.1.354	0.008772
noncoding	29770	A29770-	A	-	2	2	B.1.1.37	0.000386
noncoding	29770	A29770-	A	-	2	2	B.1.1.39	0.001019
noncoding	29770	A29770-	A	-	2	2	B.1.1.50	0.001358
noncoding	29770	A29770-	A	-	2	2	B.1.177.12	0.000303
noncoding	29770	A29770-	A	-	2	2	B.1.177.44	0.001038
noncoding	29770	A29770-	A	-	2	2	B.1.177.75	0.002081
noncoding	29770	A29770-	A	-	2	2	B.1.206	0.001631
noncoding	29770	A29770-	A	-	2	2	B.1.241	0.001623
noncoding	29770	A29770-	A	-	2	2	B.1.258.3	0.00335
noncoding	29770	A29770-	A	-	2	2	B.1.36.8	0.002
noncoding	29770	A29770-	A	-	2	2	B.1.400	0.000858
noncoding	29770	A29770-	A	-	2	2	B.1.428	0.002041
noncoding	29770	A29770-	A	-	2	2	B.1.441	0.019231
noncoding	29770	A29770-	A	-	2	2	B.1.460	0.035714
noncoding	29770	A29770-	A	-	2	2	B.1.564.1	0.003155
noncoding	29770	A29770-	A	-	2	2	B.1.565	0.001621
noncoding	29770	A29770-	A	-	2	2	B.1.576	0.001813
noncoding	29770	A29770-	A	-	2	2	B.31	0.007463
noncoding	29770	A29770-	A	-	2	2	B.39	0.004662
noncoding	29770	A29770-	A	-	2	2	B.40	0.000729
noncoding	29770	A29770-	A	-	2	2	B.6	0.00182
noncoding	29770	A29770-	A	-	2	2	C.3	0.015267
noncoding	29770	A29770-	A	-	2	2	C.38	0.016129
noncoding	29770	A29770-	A	-	2	2	N.5	0.003534
noncoding	29770	A29770-	A	-	2	2	P.1.7	0.000639
noncoding	29770	A29770-	A	-	2	2	R.1	0.00018
noncoding	29770	A29770-	A	-	1	1	AD.2	0.000219
noncoding	29770	A29770-	A	-	1	1	AK.2	0.045455
noncoding	29770	A29770-	A	-	1	1	AY.10	0.00053
noncoding	29770	A29770-	A	-	1	1	AY.106	0.000335
noncoding	29770	A29770-	A	-	1	1	AY.120.1	0.000321
noncoding	29770	A29770-	A	-	1	1	AY.13	0.000161
noncoding	29770	A29770-	A	-	1	1	AY.16	0.00038
noncoding	29770	A29770-	A	-	1	1	AY.24	0.000431
noncoding	29770	A29770-	A	-	1	1	AY.27	0.000065
noncoding	29770	A29770-	A	-	1	1	AY.29.1	0.000221
noncoding	29770	A29770-	A	-	1	1	AY.36	0.000148
noncoding	29770	A29770-	A	-	1	1	AY.39.1	0.00004
noncoding	29770	A29770-	A	-	1	1	AY.4.2.1	0.000149
noncoding	29770	A29770-	A	-	1	1	AY.4.5	0.000107
noncoding	29770	A29770-	A	-	1	1	AY.48	0.000465
noncoding	29770	A29770-	A	-	1	1	AY.51	0.000909
noncoding	29770	A29770-	A	-	1	1	AY.52	0.000814
noncoding	29770	A29770-	A	-	1	1	AY.7	0.000196
noncoding	29770	A29770-	A	-	1	1	AY.80	0.001129
noncoding	29770	A29770-	A	-	1	1	AY.81	0.001992
noncoding	29770	A29770-	A	-	1	1	AY.87	0.000833
noncoding	29770	A29770-	A	-	1	1	AY.9.1	0.000084
noncoding	29770	A29770-	A	-	1	1	B.1.1.10	0.001115
noncoding	29770	A29770-	A	-	1	1	B.1.1.161	0.003534
noncoding	29770	A29770-	A	-	1	1	B.1.1.166	0.033333
noncoding	29770	A29770-	A	-	1	1	B.1.1.174	0.003378
noncoding	29770	A29770-	A	-	1	1	B.1.1.197	0.037037
noncoding	29770	A29770-	A	-	1	1	B.1.1.216	0.00089
noncoding	29770	A29770-	A	-	1	1	B.1.1.218	0.007692
noncoding	29770	A29770-	A	-	1	1	B.1.1.221	0.010101
noncoding	29770	A29770-	A	-	1	1	B.1.1.229	0.005747
noncoding	29770	A29770-	A	-	1	1	B.1.1.274	0.005051
noncoding	29770	A29770-	A	-	1	1	B.1.1.277	0.000759
noncoding	29770	A29770-	A	-	1	1	B.1.1.286	0.002899
noncoding	29770	A29770-	A	-	1	1	B.1.1.337	0.003597
noncoding	29770	A29770-	A	-	1	1	B.1.1.409	0.002833
noncoding	29770	A29770-	A	-	1	1	B.1.1.413	0.006897
noncoding	29770	A29770-	A	-	1	1	B.1.1.523	0.001563
noncoding	29770	A29770-	A	-	1	1	B.1.1.526	0.003546
noncoding	29770	A29770-	A	-	1	1	B.1.1.54	0.003021
noncoding	29770	A29770-	A	-	1	1	B.1.1.63	0.000386
noncoding	29770	A29770-	A	-	1	1	B.1.1.70	0.000341
noncoding	29770	A29770-	A	-	1	1	B.1.1.75	0.010638
noncoding	29770	A29770-	A	-	1	1	B.1.1.99	0.02381
noncoding	29770	A29770-	A	-	1	1	B.1.110	0.004525
noncoding	29770	A29770-	A	-	1	1	B.1.111	0.001175
noncoding	29770	A29770-	A	-	1	1	B.1.160.32	0.004292
noncoding	29770	A29770-	A	-	1	1	B.1.177.11	0.001698
noncoding	29770	A29770-	A	-	1	1	B.1.177.32	0.00135
noncoding	29770	A29770-	A	-	1	1	B.1.177.4	0.000211
noncoding	29770	A29770-	A	-	1	1	B.1.177.42	0.000894
noncoding	29770	A29770-	A	-	1	1	B.1.177.54	0.000606
noncoding	29770	A29770-	A	-	1	1	B.1.177.57	0.000281
noncoding	29770	A29770-	A	-	1	1	B.1.177.6	0.000977
noncoding	29770	A29770-	A	-	1	1	B.1.177.65	0.000665
noncoding	29770	A29770-	A	-	1	1	B.1.177.81	0.000189
noncoding	29770	A29770-	A	-	1	1	B.1.192	0.009259
noncoding	29770	A29770-	A	-	1	1	B.1.222	0.001692
noncoding	29770	A29770-	A	-	1	1	B.1.258.24	0.010753
noncoding	29770	A29770-	A	-	1	1	B.1.260	0.003344
noncoding	29770	A29770-	A	-	1	1	B.1.281	0.021739
noncoding	29770	A29770-	A	-	1	1	B.1.329	0.000608
noncoding	29770	A29770-	A	-	1	1	B.1.349	0.000715
noncoding	29770	A29770-	A	-	1	1	B.1.351.2	0.000303
noncoding	29770	A29770-	A	-	1	1	B.1.351.3	0.000876
noncoding	29770	A29770-	A	-	1	1	B.1.351.5	0.0006
noncoding	29770	A29770-	A	-	1	1	B.1.36.19	0.009259
noncoding	29770	A29770-	A	-	1	1	B.1.362	0.001541
noncoding	29770	A29770-	A	-	1	1	B.1.367	0.000792
noncoding	29770	A29770-	A	-	1	1	B.1.409	0.000781
noncoding	29770	A29770-	A	-	1	1	B.1.416	0.001269
noncoding	29770	A29770-	A	-	1	1	B.1.420	0.010417
noncoding	29770	A29770-	A	-	1	1	B.1.462	0.007246
noncoding	29770	A29770-	A	-	1	1	B.1.470	0.001404
noncoding	29770	A29770-	A	-	1	1	B.1.506	0.02381
noncoding	29770	A29770-	A	-	1	1	B.1.509	0.000866
noncoding	29770	A29770-	A	-	1	1	B.1.595.1	0.005848
noncoding	29770	A29770-	A	-	1	1	B.1.617.1	0.000129
noncoding	29770	A29770-	A	-	1	1	B.1.617.3	0.002985
noncoding	29770	A29770-	A	-	1	1	B.1.619.1	0.000641
noncoding	29770	A29770-	A	-	1	1	B.1.630	0.005236
noncoding	29770	A29770-	A	-	1	1	B.1.9.5	0.005682
noncoding	29770	A29770-	A	-	1	1	B.3.1	0.001658
noncoding	29770	A29770-	A	-	1	1	B.55	0.00295
noncoding	29770	A29770-	A	-	1	1	C.30	0.001727
noncoding	29770	A29770-	A	-	1	1	C.36.3	0.000567
noncoding	29770	A29770-	A	-	1	1	K.3	0.006173
noncoding	29770	A29770-	A	-	1	1	L.3	0.003546
noncoding	29770	A29770-	A	-	1	1	N.4	0.004255
noncoding	29770	A29770-	A	-	1	1	P.1.1	0.000318
noncoding	29770	A29770-	A	-	1	1	P.1.10	0.000269
noncoding	29770	A29770-	A	-	1	1	P.2	0.000187
noncoding	29770	A29770-	A	-	1	1	P.6	0.003145
noncoding	29770	A29770-	A	-	1	1	Q.2	0.000613
noncoding	29770	A29770-	A	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.