CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29749 | A29749- | noncoding | A | - | 32843 | 32843 | 1 | 29749-29749 |
Details of the mutation A29749- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29749 | A29749- | A | - | 32843 | 32843 | All | 0.006282 |
noncoding | 29749 | A29749- | A | - | 9402 | 9402 | B.1.526 | 0.22099 |
noncoding | 29749 | A29749- | A | - | 4239 | 4239 | B.1.1.7 | 0.003795 |
noncoding | 29749 | A29749- | A | - | 3717 | 3717 | B.1.525 | 0.420618 |
noncoding | 29749 | A29749- | A | - | 1917 | 1917 | AY.4 | 0.002984 |
noncoding | 29749 | A29749- | A | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
noncoding | 29749 | A29749- | A | - | 830 | 830 | AY.38 | 0.414378 |
noncoding | 29749 | A29749- | A | - | 564 | 564 | B.1.429 | 0.01327 |
noncoding | 29749 | A29749- | A | - | 543 | 543 | B.1.617.2 | 0.002045 |
noncoding | 29749 | A29749- | A | - | 496 | 496 | B.1.2 | 0.004367 |
noncoding | 29749 | A29749- | A | - | 474 | 474 | B.1.160.7 | 0.985447 |
noncoding | 29749 | A29749- | A | - | 439 | 439 | B.1 | 0.004021 |
noncoding | 29749 | A29749- | A | - | 363 | 363 | B.1.351.2 | 0.109834 |
noncoding | 29749 | A29749- | A | - | 352 | 352 | B.1.177 | 0.004635 |
noncoding | 29749 | A29749- | A | - | 301 | 301 | AY.39 | 0.007438 |
noncoding | 29749 | A29749- | A | - | 294 | 294 | AY.5 | 0.006071 |
noncoding | 29749 | A29749- | A | - | 286 | 286 | B.1.258.11 | 0.113357 |
noncoding | 29749 | A29749- | A | - | 280 | 280 | AY.25 | 0.001684 |
noncoding | 29749 | A29749- | A | - | 272 | 272 | P.1 | 0.004285 |
noncoding | 29749 | A29749- | A | - | 230 | 230 | B.1.351 | 0.006837 |
noncoding | 29749 | A29749- | A | - | 210 | 210 | B.1.221 | 0.014917 |
noncoding | 29749 | A29749- | A | - | 207 | 207 | B.1.160.33 | 0.915929 |
noncoding | 29749 | A29749- | A | - | 203 | 203 | B.1.1.519 | 0.008061 |
noncoding | 29749 | A29749- | A | - | 202 | 202 | B.1.1 | 0.003664 |
noncoding | 29749 | A29749- | A | - | 191 | 191 | AY.103 | 0.001186 |
noncoding | 29749 | A29749- | A | - | 172 | 172 | B.1.160 | 0.005364 |
noncoding | 29749 | A29749- | A | - | 163 | 163 | B.1.626 | 0.931429 |
noncoding | 29749 | A29749- | A | - | 150 | 150 | AY.43 | 0.000665 |
noncoding | 29749 | A29749- | A | - | 145 | 145 | D.5 | 0.721393 |
noncoding | 29749 | A29749- | A | - | 113 | 113 | AY.120 | 0.004201 |
noncoding | 29749 | A29749- | A | - | 104 | 104 | B.1.1.294 | 0.131646 |
noncoding | 29749 | A29749- | A | - | 101 | 101 | B.1.258 | 0.006721 |
noncoding | 29749 | A29749- | A | - | 99 | 99 | B.1.1.222 | 0.020196 |
noncoding | 29749 | A29749- | A | - | 99 | 99 | B.1.1.63 | 0.038194 |
noncoding | 29749 | A29749- | A | - | 99 | 99 | B.1.3 | 0.259162 |
noncoding | 29749 | A29749- | A | - | 96 | 96 | AY.73 | 0.063872 |
noncoding | 29749 | A29749- | A | - | 92 | 92 | AY.42 | 0.003701 |
noncoding | 29749 | A29749- | A | - | 89 | 89 | AY.3 | 0.000885 |
noncoding | 29749 | A29749- | A | - | 87 | 87 | AY.47 | 0.002706 |
noncoding | 29749 | A29749- | A | - | 82 | 82 | B.1.243 | 0.005706 |
noncoding | 29749 | A29749- | A | - | 74 | 74 | AY.44 | 0.00045 |
noncoding | 29749 | A29749- | A | - | 69 | 69 | B.1.177.81 | 0.013063 |
noncoding | 29749 | A29749- | A | - | 68 | 68 | AY.9.2 | 0.002498 |
noncoding | 29749 | A29749- | A | - | 68 | 68 | C.37 | 0.007892 |
noncoding | 29749 | A29749- | A | - | 67 | 67 | AY.102 | 0.001776 |
noncoding | 29749 | A29749- | A | - | 64 | 64 | R.1 | 0.005761 |
noncoding | 29749 | A29749- | A | - | 60 | 60 | AY.111 | 0.010989 |
noncoding | 29749 | A29749- | A | - | 58 | 58 | D.2 | 0.004352 |
noncoding | 29749 | A29749- | A | - | 57 | 57 | B.1.239 | 0.069597 |
noncoding | 29749 | A29749- | A | - | 57 | 57 | B.1.596 | 0.004967 |
noncoding | 29749 | A29749- | A | - | 57 | 57 | C.16 | 0.060445 |
noncoding | 29749 | A29749- | A | - | 54 | 54 | B.1.427 | 0.002727 |
noncoding | 29749 | A29749- | A | - | 53 | 53 | B.1.621 | 0.004692 |
noncoding | 29749 | A29749- | A | - | 48 | 48 | P.1.16 | 0.017957 |
noncoding | 29749 | A29749- | A | - | 47 | 47 | P.1.14 | 0.002247 |
noncoding | 29749 | A29749- | A | - | 44 | 44 | B.1.595 | 0.011482 |
noncoding | 29749 | A29749- | A | - | 43 | 43 | AY.4.2 | 0.000933 |
noncoding | 29749 | A29749- | A | - | 43 | 43 | B.1.36 | 0.006274 |
noncoding | 29749 | A29749- | A | - | 41 | 41 | B.1.637 | 0.002996 |
noncoding | 29749 | A29749- | A | - | 37 | 37 | B.1.177.60 | 0.008082 |
noncoding | 29749 | A29749- | A | - | 37 | 37 | B.1.438.1 | 0.003969 |
noncoding | 29749 | A29749- | A | - | 37 | 37 | M.1 | 0.860465 |
noncoding | 29749 | A29749- | A | - | 33 | 33 | B.1.177.27 | 0.311321 |
noncoding | 29749 | A29749- | A | - | 33 | 33 | B.1.243.1 | 0.733333 |
noncoding | 29749 | A29749- | A | - | 32 | 32 | AY.29 | 0.000505 |
noncoding | 29749 | A29749- | A | - | 31 | 31 | AY.100 | 0.001426 |
noncoding | 29749 | A29749- | A | - | 31 | 31 | B.1.1.486 | 0.048896 |
noncoding | 29749 | A29749- | A | - | 30 | 30 | B.1.36.18 | 0.012605 |
noncoding | 29749 | A29749- | A | - | 29 | 29 | AY.26 | 0.000821 |
noncoding | 29749 | A29749- | A | - | 28 | 28 | B.1.177.62 | 0.033373 |
noncoding | 29749 | A29749- | A | - | 27 | 27 | B.1.346 | 0.035387 |
noncoding | 29749 | A29749- | A | - | 26 | 26 | B.1.1.434 | 0.009062 |
noncoding | 29749 | A29749- | A | - | 25 | 25 | B.1.623 | 0.013412 |
noncoding | 29749 | A29749- | A | - | 23 | 23 | AY.20 | 0.000894 |
noncoding | 29749 | A29749- | A | - | 22 | 22 | AY.119 | 0.000777 |
noncoding | 29749 | A29749- | A | - | 22 | 22 | AY.46.4 | 0.003619 |
noncoding | 29749 | A29749- | A | - | 22 | 22 | B.1.1.368 | 0.067901 |
noncoding | 29749 | A29749- | A | - | 22 | 22 | B.1.575 | 0.006675 |
noncoding | 29749 | A29749- | A | - | 21 | 21 | B.1.240 | 0.004527 |
noncoding | 29749 | A29749- | A | - | 21 | 21 | B.1.305 | 0.045161 |
noncoding | 29749 | A29749- | A | - | 20 | 20 | B.1.1.214 | 0.001109 |
noncoding | 29749 | A29749- | A | - | 20 | 20 | B.1.1.39 | 0.010194 |
noncoding | 29749 | A29749- | A | - | 20 | 20 | B.1.576 | 0.018132 |
noncoding | 29749 | A29749- | A | - | 19 | 19 | AY.6 | 0.000781 |
noncoding | 29749 | A29749- | A | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29749 | A29749- | A | - | 19 | 19 | B.1.206 | 0.015498 |
noncoding | 29749 | A29749- | A | - | 19 | 19 | B.1.289 | 0.050532 |
noncoding | 29749 | A29749- | A | - | 19 | 19 | B.1.404 | 0.02474 |
noncoding | 29749 | A29749- | A | - | 18 | 18 | B.1.1.172 | 0.327273 |
noncoding | 29749 | A29749- | A | - | 18 | 18 | B.1.1.28 | 0.005602 |
noncoding | 29749 | A29749- | A | - | 18 | 18 | B.1.1.307 | 0.04557 |
noncoding | 29749 | A29749- | A | - | 18 | 18 | B.1.556 | 0.135338 |
noncoding | 29749 | A29749- | A | - | 18 | 18 | B.1.562 | 0.333333 |
noncoding | 29749 | A29749- | A | - | 17 | 17 | AY.45 | 0.002069 |
noncoding | 29749 | A29749- | A | - | 17 | 17 | AY.5.4 | 0.004704 |
noncoding | 29749 | A29749- | A | - | 17 | 17 | AY.9 | 0.001149 |
noncoding | 29749 | A29749- | A | - | 17 | 17 | B.1.1.153 | 0.01862 |
noncoding | 29749 | A29749- | A | - | 17 | 17 | P.2 | 0.003173 |
noncoding | 29749 | A29749- | A | - | 16 | 16 | B.1.1.397 | 0.036036 |
noncoding | 29749 | A29749- | A | - | 16 | 16 | B.1.311 | 0.004393 |
noncoding | 29749 | A29749- | A | - | 16 | 16 | B.1.416.1 | 0.025 |
noncoding | 29749 | A29749- | A | - | 16 | 16 | Q.1 | 0.002021 |
noncoding | 29749 | A29749- | A | - | 15 | 15 | AY.118 | 0.00094 |
noncoding | 29749 | A29749- | A | - | 15 | 15 | AY.61 | 0.001572 |
noncoding | 29749 | A29749- | A | - | 15 | 15 | B | 0.001917 |
noncoding | 29749 | A29749- | A | - | 15 | 15 | B.1.1.318 | 0.004526 |
noncoding | 29749 | A29749- | A | - | 14 | 14 | B.1.1.25 | 0.007959 |
noncoding | 29749 | A29749- | A | - | 14 | 14 | B.1.1.420 | 0.014085 |
noncoding | 29749 | A29749- | A | - | 14 | 14 | B.1.609 | 0.006711 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | AY.74 | 0.001503 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | AY.98.1 | 0.00063 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.1.317 | 0.005352 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.110.3 | 0.009339 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.177.7 | 0.002143 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.234 | 0.001715 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.241 | 0.010552 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.36.29 | 0.006725 |
noncoding | 29749 | A29749- | A | - | 13 | 13 | B.1.497 | 0.004092 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | AY.114 | 0.002773 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | AY.117 | 0.001014 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | AY.23 | 0.000837 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | AY.75 | 0.000672 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | AY.99.2 | 0.001106 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.1.33 | 0.005051 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.1.416 | 0.01086 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.177.6 | 0.011719 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.177.75 | 0.012487 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.258.17 | 0.001248 |
noncoding | 29749 | A29749- | A | - | 12 | 12 | B.1.416 | 0.015228 |
noncoding | 29749 | A29749- | A | - | 11 | 11 | AY.75.1 | 0.001983 |
noncoding | 29749 | A29749- | A | - | 11 | 11 | B.1.1.306 | 0.004822 |
noncoding | 29749 | A29749- | A | - | 10 | 10 | AY.46 | 0.001041 |
noncoding | 29749 | A29749- | A | - | 10 | 10 | B.1.177.86 | 0.001835 |
noncoding | 29749 | A29749- | A | - | 10 | 10 | B.1.620 | 0.009461 |
noncoding | 29749 | A29749- | A | - | 10 | 10 | P.1.4 | 0.009766 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | AY.12 | 0.002845 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | AY.46.5 | 0.001786 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | AY.85 | 0.003845 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.1.1 | 0.00294 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.1.316 | 0.008326 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.1.37 | 0.001736 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.160.14 | 0.019068 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.258.3 | 0.015075 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.36.1 | 0.010262 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.398 | 0.026786 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | B.1.599 | 0.032847 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | C.36.3 | 0.005105 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | P.1.15 | 0.002091 |
noncoding | 29749 | A29749- | A | - | 9 | 9 | P.1.7 | 0.002874 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | AY.13 | 0.001288 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | AY.14 | 0.000704 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | AY.34 | 0.000776 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | AY.84 | 0.0035 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.1.303 | 0.022099 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.177.82 | 0.003819 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.36.22 | 0.009662 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.396 | 0.005646 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.400 | 0.003432 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.422 | 0.006499 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.466.2 | 0.00313 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.1.93 | 0.00747 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | B.40 | 0.002914 |
noncoding | 29749 | A29749- | A | - | 8 | 8 | P.3 | 0.012759 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | A | 0.002709 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | AY.46.6 | 0.000505 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | AY.54 | 0.000667 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | B.1.1.526 | 0.024823 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | N.5 | 0.012367 |
noncoding | 29749 | A29749- | A | - | 7 | 7 | P.1.1 | 0.002224 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | AY.65 | 0.003198 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | AY.71 | 0.00285 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | AY.98 | 0.000474 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | B.1.1.464 | 0.008837 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | B.1.177.73 | 0.003398 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | B.1.177.87 | 0.004367 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | B.1.214.2 | 0.003597 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | N.4 | 0.025532 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | P.1.12 | 0.002904 |
noncoding | 29749 | A29749- | A | - | 6 | 6 | Q.4 | 0.002729 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | AY.35 | 0.001165 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | AY.59 | 0.002648 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.174 | 0.016892 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.192 | 0.011547 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.198 | 0.007342 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.265 | 0.015773 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.288 | 0.009579 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.312 | 0.00956 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.1.369 | 0.002231 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.104 | 0.01845 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.149 | 0.017123 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.160.15 | 0.024752 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.177.12 | 0.000758 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.177.21 | 0.000382 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.177.32 | 0.006748 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.177.42 | 0.004472 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.210 | 0.010661 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | B.1.389 | 0.00501 |
noncoding | 29749 | A29749- | A | - | 5 | 5 | P.5 | 0.068493 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | A.2.5 | 0.001996 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | AY.30 | 0.001583 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | AY.36 | 0.000593 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.1.189 | 0.006051 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.1.298 | 0.003448 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.1.41 | 0.025316 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.1.46 | 0.017467 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.1.462 | 0.034483 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.177.18 | 0.00464 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.177.57 | 0.001124 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.351.3 | 0.003506 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.36.16 | 0.005698 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.369 | 0.001141 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.469 | 0.01444 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.568 | 0.004444 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.582 | 0.001963 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | B.1.628 | 0.001409 |
noncoding | 29749 | A29749- | A | - | 4 | 4 | P.1.17 | 0.000647 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | A.1 | 0.000846 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | A.2.3 | 0.014218 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.110 | 0.000338 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.39.1 | 0.000119 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.40 | 0.002893 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.51 | 0.002727 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.62 | 0.001307 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.63 | 0.001161 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.7 | 0.000588 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | AY.70 | 0.000626 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.135 | 0.014085 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.228 | 0.009146 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.236 | 0.02069 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.277 | 0.002276 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.337 | 0.010791 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.372 | 0.002066 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.375 | 0.035714 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.401 | 0.2 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.428 | 0.028302 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.432 | 0.003797 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.50 | 0.002037 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.1.57 | 0.034483 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.111 | 0.003525 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.145 | 0.157895 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.160.24 | 0.013274 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.177.15 | 0.001893 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.177.37 | 0.081081 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.177.55 | 0.006993 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.258.16 | 0.00491 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.356 | 0.005181 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.36.17 | 0.001482 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.36.31 | 0.005254 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.409 | 0.002344 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.44 | 0.025 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.505 | 0.013158 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.509 | 0.002597 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.565 | 0.002431 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.588 | 0.00273 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.590 | 0.013636 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.627 | 0.006061 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.1.9.4 | 0.018405 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | B.39 | 0.006993 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | P.1.10 | 0.000808 |
noncoding | 29749 | A29749- | A | - | 3 | 3 | Q.8 | 0.000495 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | A.23.1 | 0.001408 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AN.1 | 0.04 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.106 | 0.00067 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.24 | 0.000862 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.33 | 0.000134 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.46.2 | 0.001271 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.46.3 | 0.001867 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.52 | 0.001629 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.56 | 0.00321 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.9.1 | 0.000167 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.91 | 0.001461 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AY.95 | 0.001522 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | AZ.2 | 0.001642 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.161 | 0.007067 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.170 | 0.002494 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.216 | 0.001781 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.218 | 0.015385 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.232 | 0.00363 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.275 | 0.022472 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.305 | 0.007722 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.343 | 0.041667 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.345 | 0.086957 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.409 | 0.005666 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.448 | 0.004065 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.517 | 0.013605 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.521 | 0.010695 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.1.528 | 0.009615 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.110 | 0.00905 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.126 | 0.002551 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.177.10 | 0.001756 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.177.4 | 0.000422 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.177.5 | 0.002484 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.177.50 | 0.00939 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.177.77 | 0.001452 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.195 | 0.01005 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.23 | 0.012121 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.258.14 | 0.001961 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.298 | 0.004228 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.301 | 0.011834 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.319 | 0.006098 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.320 | 0.002491 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.350 | 0.005865 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.36.10 | 0.009569 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.36.26 | 0.005714 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.391 | 0.002255 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.425 | 0.005988 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.433 | 0.00639 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.441 | 0.019231 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.503 | 0.004975 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.517 | 0.000854 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.543 | 0.02 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.561 | 0.000794 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.567 | 0.006667 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.575.1 | 0.004878 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | B.3.1 | 0.003317 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | C.38 | 0.016129 |
noncoding | 29749 | A29749- | A | - | 2 | 2 | P.1.13 | 0.001797 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | A.2 | 0.000662 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | A.27 | 0.001656 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AH.2 | 0.012048 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AK.2 | 0.045455 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AU.3 | 0.00211 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.10 | 0.00053 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.108 | 0.001103 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.116.1 | 0.000311 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.2 | 0.000356 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.32 | 0.000532 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.48 | 0.000465 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.53 | 0.000288 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.64 | 0.000595 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.66 | 0.00107 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.88 | 0.000884 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | AZ.1 | 0.000867 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.154 | 0.04 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.163 | 0.007634 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.196 | 0.005714 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.205 | 0.003717 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.227 | 0.004348 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.229 | 0.005747 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.241 | 0.00207 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.263 | 0.001558 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.274 | 0.005051 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.289 | 0.002083 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.327 | 0.1 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.336 | 0.016667 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.352 | 0.03125 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.362 | 0.005618 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.387 | 0.058824 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.433 | 0.001425 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.466 | 0.008696 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.47 | 0.005348 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.71 | 0.006061 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.1.8 | 0.003584 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.12 | 0.008 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.147 | 0.000756 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.159 | 0.012195 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.160.27 | 0.015152 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.160.32 | 0.004292 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.24 | 0.001295 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.51 | 0.004566 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.65 | 0.000665 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.79 | 0.002342 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.177.8 | 0.000752 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.178 | 0.02381 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.181 | 0.019608 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.189 | 0.004292 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.190 | 0.01 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.221.4 | 0.004167 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.232 | 0.000537 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.258.24 | 0.010753 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.291 | 0.019231 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.332 | 0.003497 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.336 | 0.002439 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.337 | 0.005587 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.359 | 0.022727 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.36.38 | 0.001642 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.390 | 0.010638 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.395 | 0.007042 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.420 | 0.010417 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.424 | 0.008065 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.428.3 | 0.012821 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.429.1 | 0.012048 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.478 | 0.011765 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.493 | 0.025641 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.508 | 0.025641 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.530 | 0.007143 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.539 | 0.017544 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.540 | 0.009709 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.547 | 0.02439 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.551 | 0.00129 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.564 | 0.000426 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.580 | 0.004065 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.595.1 | 0.005848 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.6 | 0.017241 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.600 | 0.005848 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.1.81 | 0.021277 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.27 | 0.015385 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.28 | 0.003279 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.31 | 0.003731 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.55 | 0.00295 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | C.1 | 0.002392 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | C.1.2 | 0.004255 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | C.18 | 0.002591 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | C.35 | 0.000774 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | L.3 | 0.003546 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | P.6 | 0.003145 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | P.7 | 0.004367 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | U.3 | 0.003861 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | W.1 | 0.008696 |
noncoding | 29749 | A29749- | A | - | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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