CoVGLUE  Mutations  Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF  CodonNum  Mut  ORF1abMut  MutType  RefCodon  MutCodon  AACount  CodonCount  CodonProp  Genome Position 
noncoding  29700  A29700T  noncoding  A  T  79  79  1  2970029700 
Details of the mutation A29700T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF  CodonNum  Mut  RefCodon  MutCodon  CodonCount  AACount  Lineage  LineageCodonProp 
noncoding  29700  A29700T  A  T  79  79  All  0.000015 
noncoding  29700  A29700T  A  T  26  26  AY.4  0.00004 
noncoding  29700  A29700T  A  T  19  19  AY.44  0.000116 
noncoding  29700  A29700T  A  T  6  6  B.1.526  0.000141 
noncoding  29700  A29700T  A  T  5  5  B.1.617.2  0.000019 
noncoding  29700  A29700T  A  T  3  3  B.1  0.000027 
noncoding  29700  A29700T  A  T  3  3  B.1.351  0.000089 
noncoding  29700  A29700T  A  T  2  2  B.1.1  0.000036 
noncoding  29700  A29700T  A  T  1  1  A.1  0.000282 
noncoding  29700  A29700T  A  T  1  1  AY.103  0.000006 
noncoding  29700  A29700T  A  T  1  1  AY.20  0.000039 
noncoding  29700  A29700T  A  T  1  1  AY.23  0.00007 
noncoding  29700  A29700T  A  T  1  1  AY.25  0.000006 
noncoding  29700  A29700T  A  T  1  1  AY.36  0.000148 
noncoding  29700  A29700T  A  T  1  1  AY.4.5  0.000107 
noncoding  29700  A29700T  A  T  1  1  AY.62  0.000436 
noncoding  29700  A29700T  A  T  1  1  AY.69  0.000187 
noncoding  29700  A29700T  A  T  1  1  AY.7.1  0.000113 
noncoding  29700  A29700T  A  T  1  1  B.1.1.27  0.00565 
noncoding  29700  A29700T  A  T  1  1  B.1.1.7  0.000001 
noncoding  29700  A29700T  A  T  1  1  B.1.279  0.000514 
noncoding  29700  A29700T  A  T  1  1  B.1.429  0.000024 
noncoding  29700  A29700T  A  T  1  1  B.1.582  0.000491 
CoVGLUE is still in development. CoVGLUE was originally developed as part of COGUK by Josh Singer using the GLUE framework at the MRCUniversity of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
