CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : Mut = A28271T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding28271A28271TnoncodingAT1787717877128271-28271

Details of the mutation A28271T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding28271A28271TAT1787717877All0.003419
noncoding28271A28271TAT84788478C.370.983983
noncoding28271A28271TAT10411041B.1.617.20.00392
noncoding28271A28271TAT970970B.1.6200.917692
noncoding28271A28271TAT719719AY.1020.019064
noncoding28271A28271TAT549549AY.1030.003409
noncoding28271A28271TAT428428AY.430.001896
noncoding28271A28271TAT371371C.37.10.971204
noncoding28271A28271TAT361361B.1.617.10.046557
noncoding28271A28271TAT322322B.1.1.70.000288
noncoding28271A28271TAT311311AY.610.032586
noncoding28271A28271TAT305305AY.440.001856
noncoding28271A28271TAT288288B.1.6340.986301
noncoding28271A28271TAT255255AY.340.024726
noncoding28271A28271TAT214214B.1.2410.173701
noncoding28271A28271TAT202202AY.550.185321
noncoding28271A28271TAT201201AY.39.10.007962
noncoding28271A28271TAT172172AY.230.011997
noncoding28271A28271TAT161161AY.1190.005685
noncoding28271A28271TAT134134AY.1130.01908
noncoding28271A28271TAT125125AY.40.000195
noncoding28271A28271TAT115115B.10.001053
noncoding28271A28271TAT9898AY.250.000589
noncoding28271A28271TAT9797AY.420.003902
noncoding28271A28271TAT9494AY.200.003653
noncoding28271A28271TAT8484AY.330.005609
noncoding28271A28271TAT7070AY.16.10.032895
noncoding28271A28271TAT6868AY.160.025816
noncoding28271A28271TAT5959AY.30.000587
noncoding28271A28271TAT5959AY.460.006141
noncoding28271A28271TAT5858AY.680.015877
noncoding28271A28271TAT5858P.50.794521
noncoding28271A28271TAT5555AY.9.20.00202
noncoding28271A28271TAT4949AY.50.001012
noncoding28271A28271TAT4646AY.950.035008
noncoding28271A28271TAT4444AY.98.10.002131
noncoding28271A28271TAT4343AY.75.10.007753
noncoding28271A28271TAT4242AY.530.012076
noncoding28271A28271TAT4141AY.100.021728
noncoding28271A28271TAT3939AY.1170.003296
noncoding28271A28271TAT3737AY.260.001047
noncoding28271A28271TAT3535AY.1200.001301
noncoding28271A28271TAT3232B.1.10.000581
noncoding28271A28271TAT2929AY.540.002765
noncoding28271A28271TAT2727AY.390.000667
noncoding28271A28271TAT2626B.1.20.000229
noncoding28271A28271TAT2323B.1.617.30.068657
noncoding28271A28271TAT2121AY.1000.000966
noncoding28271A28271TAT2121AY.1180.001316
noncoding28271A28271TAT2020AY.99.20.001843
noncoding28271A28271TAT1818AY.450.00219
noncoding28271A28271TAT1818P.10.000284
noncoding28271A28271TAT1717AY.470.000529
noncoding28271A28271TAT1717AY.920.004884
noncoding28271A28271TAT1717B.1.3510.000505
noncoding28271A28271TAT1616AY.280.030246
noncoding28271A28271TAT1616AY.710.007601
noncoding28271A28271TAT1616AY.750.000896
noncoding28271A28271TAT1515AY.970.02551
noncoding28271A28271TAT1414AY.480.006512
noncoding28271A28271TAT1414AY.520.011401
noncoding28271A28271TAT1414AY.560.022472
noncoding28271A28271TAT1414AY.840.006124
noncoding28271A28271TAT1313AY.5.40.003597
noncoding28271A28271TAT1313B.1.5260.000306
noncoding28271A28271TAT1212AY.1060.004019
noncoding28271A28271TAT1212AY.1160.003441
noncoding28271A28271TAT1212AY.320.00639
noncoding28271A28271TAT1212B.1.1770.000158
noncoding28271A28271TAT1212P.1.150.002788
noncoding28271A28271TAT1111AY.400.010608
noncoding28271A28271TAT1111AY.600.010319
noncoding28271A28271TAT1111AY.740.001272
noncoding28271A28271TAT1010AY.650.00533
noncoding28271A28271TAT1010AY.700.002085
noncoding28271A28271TAT1010AY.960.020747
noncoding28271A28271TAT99AY.1210.001218
noncoding28271A28271TAT99AY.5.30.003036
noncoding28271A28271TAT99B.1.1600.000281
noncoding28271A28271TAT88AY.210.01518
noncoding28271A28271TAT88AY.290.000126
noncoding28271A28271TAT88AY.3.10.000682
noncoding28271A28271TAT88AY.4.2.10.001192
noncoding28271A28271TAT88AY.770.009019
noncoding28271A28271TAT88AY.9.10.00067
noncoding28271A28271TAT88B.1.575.10.019512
noncoding28271A28271TAT77AY.7.20.003915
noncoding28271A28271TAT77AY.760.033816
noncoding28271A28271TAT77AY.990.007345
noncoding28271A28271TAT77B.1.1.3720.004821
noncoding28271A28271TAT66AY.1010.002943
noncoding28271A28271TAT66AY.1140.001387
noncoding28271A28271TAT66AY.140.000528
noncoding28271A28271TAT66AY.350.001398
noncoding28271A28271TAT66AY.370.001896
noncoding28271A28271TAT66AY.380.002996
noncoding28271A28271TAT66AY.630.002321
noncoding28271A28271TAT66B.1.1.10.00196
noncoding28271A28271TAT66B.1.3890.006012
noncoding28271A28271TAT55AY.130.000805
noncoding28271A28271TAT55AY.510.004545
noncoding28271A28271TAT55AY.870.004163
noncoding28271A28271TAT55AY.910.003652
noncoding28271A28271TAT55AY.980.000395
noncoding28271A28271TAT55B.1.1.280.001556
noncoding28271A28271TAT55B.1.2140.018315
noncoding28271A28271TAT55P.1.120.00242
noncoding28271A28271TAT44AY.1080.00441
noncoding28271A28271TAT44AY.1110.000733
noncoding28271A28271TAT44AY.120.001264
noncoding28271A28271TAT44AY.29.10.000882
noncoding28271A28271TAT44AY.46.60.000289
noncoding28271A28271TAT44AY.590.002119
noncoding28271A28271TAT44AY.670.001857
noncoding28271A28271TAT44AY.730.002661
noncoding28271A28271TAT44B.1.4040.005208
noncoding28271A28271TAT44B.1.5960.000349
noncoding28271A28271TAT44B.1.6210.000354
noncoding28271A28271TAT44Q.30.00058
noncoding28271A28271TAT33A0.001161
noncoding28271A28271TAT33AY.10.001187
noncoding28271A28271TAT33AY.240.001293
noncoding28271A28271TAT33AY.4.20.000065
noncoding28271A28271TAT33AY.46.40.000494
noncoding28271A28271TAT33AY.580.002722
noncoding28271A28271TAT33AY.690.00056
noncoding28271A28271TAT33AY.7.10.000338
noncoding28271A28271TAT33AY.940.001328
noncoding28271A28271TAT33B.1.1.500.002037
noncoding28271A28271TAT33B.1.1460.012712
noncoding28271A28271TAT33B.1.177.810.000568
noncoding28271A28271TAT33B.1.5750.00091
noncoding28271A28271TAT33B.1.6090.001438
noncoding28271A28271TAT33B.1.6280.001057
noncoding28271A28271TAT33B.60.00273
noncoding28271A28271TAT33R.10.00027
noncoding28271A28271TAT22AY.1040.003968
noncoding28271A28271TAT22AY.1070.000932
noncoding28271A28271TAT22AY.1100.000225
noncoding28271A28271TAT22AY.20.000712
noncoding28271A28271TAT22AY.34.10.00102
noncoding28271A28271TAT22AY.360.000296
noncoding28271A28271TAT22AY.500.001599
noncoding28271A28271TAT22AY.640.00119
noncoding28271A28271TAT22AY.720.002721
noncoding28271A28271TAT22AY.780.003082
noncoding28271A28271TAT22AY.800.002257
noncoding28271A28271TAT22AY.880.001768
noncoding28271A28271TAT22B.1.1.3170.000823
noncoding28271A28271TAT22B.1.1.4480.004065
noncoding28271A28271TAT22B.1.1.5150.04
noncoding28271A28271TAT22B.1.1.5280.009615
noncoding28271A28271TAT22B.1.214.20.001199
noncoding28271A28271TAT22B.1.2370.00995
noncoding28271A28271TAT22B.1.2580.000133
noncoding28271A28271TAT22B.1.6290.026667
noncoding28271A28271TAT22B.1.6370.000146
noncoding28271A28271TAT22C.350.001548
noncoding28271A28271TAT22C.36.30.001134
noncoding28271A28271TAT22P.1.10.000635
noncoding28271A28271TAT22P.1.100.000539
noncoding28271A28271TAT22P.1.170.000324
noncoding28271A28271TAT22P.20.000373
noncoding28271A28271TAT22Q.40.00091
noncoding28271A28271TAT11A.190.009434
noncoding28271A28271TAT11A.210.00277
noncoding28271A28271TAT11AD.20.000219
noncoding28271A28271TAT11AY.1090.00074
noncoding28271A28271TAT11AY.110.001339
noncoding28271A28271TAT11AY.120.10.000321
noncoding28271A28271TAT11AY.120.20.001285
noncoding28271A28271TAT11AY.170.008197
noncoding28271A28271TAT11AY.220.002092
noncoding28271A28271TAT11AY.4.30.000842
noncoding28271A28271TAT11AY.4.40.000409
noncoding28271A28271TAT11AY.4.50.000107
noncoding28271A28271TAT11AY.410.000294
noncoding28271A28271TAT11AY.46.10.001027
noncoding28271A28271TAT11AY.46.30.000934
noncoding28271A28271TAT11AY.490.003195
noncoding28271A28271TAT11AY.5.20.002463
noncoding28271A28271TAT11AY.60.000041
noncoding28271A28271TAT11AY.660.00107
noncoding28271A28271TAT11AY.70.000196
noncoding28271A28271TAT11AY.790.001211
noncoding28271A28271TAT11AY.90.000068
noncoding28271A28271TAT11AY.900.000684
noncoding28271A28271TAT11AY.99.10.001553
noncoding28271A28271TAT11B0.000128
noncoding28271A28271TAT11B.1.1.2200.001859
noncoding28271A28271TAT11B.1.1.2220.000204
noncoding28271A28271TAT11B.1.1.2410.00207
noncoding28271A28271TAT11B.1.1.2610.008621
noncoding28271A28271TAT11B.1.1.2650.003155
noncoding28271A28271TAT11B.1.1.3220.008772
noncoding28271A28271TAT11B.1.1.4090.002833
noncoding28271A28271TAT11B.1.1.5190.00004
noncoding28271A28271TAT11B.1.1570.002985
noncoding28271A28271TAT11B.1.160.320.004292
noncoding28271A28271TAT11B.1.177.170.000821
noncoding28271A28271TAT11B.1.177.730.000566
noncoding28271A28271TAT11B.1.2230.002778
noncoding28271A28271TAT11B.1.2340.000132
noncoding28271A28271TAT11B.1.2400.000216
noncoding28271A28271TAT11B.1.3110.000275
noncoding28271A28271TAT11B.1.3490.000715
noncoding28271A28271TAT11B.1.360.000146
noncoding28271A28271TAT11B.1.3770.004566
noncoding28271A28271TAT11B.1.415.10.007576
noncoding28271A28271TAT11B.1.4270.00005
noncoding28271A28271TAT11B.1.4620.007246
noncoding28271A28271TAT11B.1.4700.001404
noncoding28271A28271TAT11B.1.5370.02
noncoding28271A28271TAT11B.1.5760.000907
noncoding28271A28271TAT11B.1.5880.00091
noncoding28271A28271TAT11B.1.5950.000261
noncoding28271A28271TAT11B.1.6190.000871
noncoding28271A28271TAT11B.1.619.10.000641
noncoding28271A28271TAT11B.1.6230.000536
noncoding28271A28271TAT11B.1.6380.052632
noncoding28271A28271TAT11B.550.00295
noncoding28271A28271TAT11C.36.3.10.002717
noncoding28271A28271TAT11C.380.008065
noncoding28271A28271TAT11C.390.018868
noncoding28271A28271TAT11P.1.130.000898
noncoding28271A28271TAT11P.1.160.000374
noncoding28271A28271TAT11P.1.20.001156
noncoding28271A28271TAT11Q.10.000126
noncoding28271A28271TAT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.