CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : Mut = A28271-
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 28271 | A28271- | noncoding | A | - | 3700454 | 3700454 | 1 | 28271-28271 |
Details of the mutation A28271- within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 28271 | A28271- | A | - | 3700454 | 3700454 | All | 0.707756 |
| noncoding | 28271 | A28271- | A | - | 1032002 | 1032002 | B.1.1.7 | 0.923872 |
| noncoding | 28271 | A28271- | A | - | 618641 | 618641 | AY.4 | 0.962867 |
| noncoding | 28271 | A28271- | A | - | 234295 | 234295 | B.1.617.2 | 0.882218 |
| noncoding | 28271 | A28271- | A | - | 190715 | 190715 | AY.43 | 0.844956 |
| noncoding | 28271 | A28271- | A | - | 158895 | 158895 | AY.25 | 0.955725 |
| noncoding | 28271 | A28271- | A | - | 153592 | 153592 | AY.44 | 0.934878 |
| noncoding | 28271 | A28271- | A | - | 153164 | 153164 | AY.103 | 0.951004 |
| noncoding | 28271 | A28271- | A | - | 98199 | 98199 | AY.3 | 0.976725 |
| noncoding | 28271 | A28271- | A | - | 63123 | 63123 | AY.29 | 0.995678 |
| noncoding | 28271 | A28271- | A | - | 45443 | 45443 | AY.5 | 0.938362 |
| noncoding | 28271 | A28271- | A | - | 45394 | 45394 | AY.4.2 | 0.984536 |
| noncoding | 28271 | A28271- | A | - | 40635 | 40635 | B.1.526 | 0.955106 |
| noncoding | 28271 | A28271- | A | - | 39280 | 39280 | AY.39 | 0.970667 |
| noncoding | 28271 | A28271- | A | - | 33527 | 33527 | AY.26 | 0.949155 |
| noncoding | 28271 | A28271- | A | - | 33447 | 33447 | AY.102 | 0.886812 |
| noncoding | 28271 | A28271- | A | - | 31037 | 31037 | AY.47 | 0.965411 |
| noncoding | 28271 | A28271- | A | - | 26013 | 26013 | AY.119 | 0.918473 |
| noncoding | 28271 | A28271- | A | - | 25889 | 25889 | AY.120 | 0.962524 |
| noncoding | 28271 | A28271- | A | - | 24548 | 24548 | AY.20 | 0.954061 |
| noncoding | 28271 | A28271- | A | - | 23260 | 23260 | AY.39.1 | 0.921407 |
| noncoding | 28271 | A28271- | A | - | 23139 | 23139 | AY.42 | 0.930885 |
| noncoding | 28271 | A28271- | A | - | 22886 | 22886 | AY.6 | 0.941268 |
| noncoding | 28271 | A28271- | A | - | 22032 | 22032 | AY.9.2 | 0.809226 |
| noncoding | 28271 | A28271- | A | - | 20848 | 20848 | AY.100 | 0.959146 |
| noncoding | 28271 | A28271- | A | - | 18720 | 18720 | AY.98.1 | 0.906625 |
| noncoding | 28271 | A28271- | A | - | 17004 | 17004 | AY.75 | 0.952605 |
| noncoding | 28271 | A28271- | A | - | 15314 | 15314 | AY.118 | 0.959404 |
| noncoding | 28271 | A28271- | A | - | 14182 | 14182 | AY.9 | 0.958632 |
| noncoding | 28271 | A28271- | A | - | 13550 | 13550 | AY.27 | 0.876966 |
| noncoding | 28271 | A28271- | A | - | 13420 | 13420 | AY.33 | 0.89616 |
| noncoding | 28271 | A28271- | A | - | 13186 | 13186 | B.1.637 | 0.963537 |
| noncoding | 28271 | A28271- | A | - | 12685 | 12685 | AY.46.6 | 0.915951 |
| noncoding | 28271 | A28271- | A | - | 12262 | 12262 | AY.23 | 0.85527 |
| noncoding | 28271 | A28271- | A | - | 11880 | 11880 | AY.98 | 0.938463 |
| noncoding | 28271 | A28271- | A | - | 11349 | 11349 | AY.3.1 | 0.967602 |
| noncoding | 28271 | A28271- | A | - | 11185 | 11185 | AY.9.1 | 0.936453 |
| noncoding | 28271 | A28271- | A | - | 11059 | 11059 | AY.14 | 0.973332 |
| noncoding | 28271 | A28271- | A | - | 10850 | 10850 | R.1 | 0.976598 |
| noncoding | 28271 | A28271- | A | - | 10426 | 10426 | AY.99.2 | 0.960833 |
| noncoding | 28271 | A28271- | A | - | 10129 | 10129 | AY.117 | 0.856068 |
| noncoding | 28271 | A28271- | A | - | 9919 | 9919 | AY.54 | 0.945748 |
| noncoding | 28271 | A28271- | A | - | 9257 | 9257 | AY.34 | 0.897605 |
| noncoding | 28271 | A28271- | A | - | 9056 | 9056 | AY.4.5 | 0.973449 |
| noncoding | 28271 | A28271- | A | - | 8697 | 8697 | AY.7.1 | 0.980165 |
| noncoding | 28271 | A28271- | A | - | 8309 | 8309 | AY.74 | 0.960911 |
| noncoding | 28271 | A28271- | A | - | 8109 | 8109 | AY.46 | 0.843984 |
| noncoding | 28271 | A28271- | A | - | 7840 | 7840 | AY.61 | 0.821459 |
| noncoding | 28271 | A28271- | A | - | 7473 | 7473 | Q.1 | 0.944037 |
| noncoding | 28271 | A28271- | A | - | 6798 | 6798 | AY.121 | 0.919892 |
| noncoding | 28271 | A28271- | A | - | 6592 | 6592 | AY.113 | 0.93863 |
| noncoding | 28271 | A28271- | A | - | 6549 | 6549 | AY.4.2.1 | 0.975715 |
| noncoding | 28271 | A28271- | A | - | 6518 | 6518 | Q.3 | 0.945323 |
| noncoding | 28271 | A28271- | A | - | 6236 | 6236 | AY.36 | 0.924263 |
| noncoding | 28271 | A28271- | A | - | 6041 | 6041 | Q.8 | 0.996207 |
| noncoding | 28271 | A28271- | A | - | 5932 | 5932 | AY.13 | 0.954926 |
| noncoding | 28271 | A28271- | A | - | 5833 | 5833 | AY.45 | 0.709783 |
| noncoding | 28271 | A28271- | A | - | 5801 | 5801 | AY.46.4 | 0.954269 |
| noncoding | 28271 | A28271- | A | - | 5339 | 5339 | AY.69 | 0.99664 |
| noncoding | 28271 | A28271- | A | - | 5184 | 5184 | AY.111 | 0.949451 |
| noncoding | 28271 | A28271- | A | - | 4982 | 4982 | AY.75.1 | 0.898305 |
| noncoding | 28271 | A28271- | A | - | 4911 | 4911 | AY.46.5 | 0.974405 |
| noncoding | 28271 | A28271- | A | - | 4820 | 4820 | AY.7 | 0.944728 |
| noncoding | 28271 | A28271- | A | - | 4460 | 4460 | AY.29.1 | 0.983462 |
| noncoding | 28271 | A28271- | A | - | 4449 | 4449 | B.1.617.1 | 0.573768 |
| noncoding | 28271 | A28271- | A | - | 4188 | 4188 | AY.70 | 0.873228 |
| noncoding | 28271 | A28271- | A | - | 4186 | 4186 | AY.114 | 0.967414 |
| noncoding | 28271 | A28271- | A | - | 4177 | 4177 | AY.110 | 0.470701 |
| noncoding | 28271 | A28271- | A | - | 4095 | 4095 | AY.35 | 0.954323 |
| noncoding | 28271 | A28271- | A | - | 3155 | 3155 | AY.53 | 0.907131 |
| noncoding | 28271 | A28271- | A | - | 3148 | 3148 | AY.93 | 0.85964 |
| noncoding | 28271 | A28271- | A | - | 3140 | 3140 | AY.116.1 | 0.977889 |
| noncoding | 28271 | A28271- | A | - | 3109 | 3109 | AY.12 | 0.982617 |
| noncoding | 28271 | A28271- | A | - | 3077 | 3077 | AY.92 | 0.883941 |
| noncoding | 28271 | A28271- | A | - | 3048 | 3048 | B.1.575 | 0.924757 |
| noncoding | 28271 | A28271- | A | - | 3006 | 3006 | B.1.1 | 0.054532 |
| noncoding | 28271 | A28271- | A | - | 2959 | 2959 | AY.37 | 0.935209 |
| noncoding | 28271 | A28271- | A | - | 2858 | 2858 | AY.5.4 | 0.790814 |
| noncoding | 28271 | A28271- | A | - | 2841 | 2841 | AY.68 | 0.777717 |
| noncoding | 28271 | A28271- | A | - | 2840 | 2840 | AY.41 | 0.834803 |
| noncoding | 28271 | A28271- | A | - | 2662 | 2662 | AY.2 | 0.948006 |
| noncoding | 28271 | A28271- | A | - | 2656 | 2656 | AY.5.3 | 0.896086 |
| noncoding | 28271 | A28271- | A | - | 2620 | 2620 | B.1.628 | 0.923185 |
| noncoding | 28271 | A28271- | A | - | 2616 | 2616 | B.1 | 0.023961 |
| noncoding | 28271 | A28271- | A | - | 2615 | 2615 | AY.120.1 | 0.839486 |
| noncoding | 28271 | A28271- | A | - | 2604 | 2604 | AY.106 | 0.87207 |
| noncoding | 28271 | A28271- | A | - | 2538 | 2538 | AY.63 | 0.981818 |
| noncoding | 28271 | A28271- | A | - | 2416 | 2416 | AY.1 | 0.956074 |
| noncoding | 28271 | A28271- | A | - | 2395 | 2395 | AY.23.1 | 0.999583 |
| noncoding | 28271 | A28271- | A | - | 2281 | 2281 | AY.4.4 | 0.933306 |
| noncoding | 28271 | A28271- | A | - | 2220 | 2220 | AY.116 | 0.63665 |
| noncoding | 28271 | A28271- | A | - | 2220 | 2220 | AY.85 | 0.948313 |
| noncoding | 28271 | A28271- | A | - | 2202 | 2202 | AY.62 | 0.959477 |
| noncoding | 28271 | A28271- | A | - | 2165 | 2165 | AY.30 | 0.856747 |
| noncoding | 28271 | A28271- | A | - | 2148 | 2148 | AY.24 | 0.925862 |
| noncoding | 28271 | A28271- | A | - | 2119 | 2119 | AY.94 | 0.938026 |
| noncoding | 28271 | A28271- | A | - | 2054 | 2054 | AY.48 | 0.955349 |
| noncoding | 28271 | A28271- | A | - | 2032 | 2032 | AY.107 | 0.946878 |
| noncoding | 28271 | A28271- | A | - | 1961 | 1961 | Q.4 | 0.891769 |
| noncoding | 28271 | A28271- | A | - | 1947 | 1947 | AY.34.1 | 0.992861 |
| noncoding | 28271 | A28271- | A | - | 1945 | 1945 | AY.67 | 0.902971 |
| noncoding | 28271 | A28271- | A | - | 1938 | 1938 | AY.120.2.1 | 0.96562 |
| noncoding | 28271 | A28271- | A | - | 1922 | 1922 | AY.101 | 0.942619 |
| noncoding | 28271 | A28271- | A | - | 1873 | 1873 | AY.84 | 0.819335 |
| noncoding | 28271 | A28271- | A | - | 1752 | 1752 | AY.59 | 0.927966 |
| noncoding | 28271 | A28271- | A | - | 1751 | 1751 | AY.71 | 0.831829 |
| noncoding | 28271 | A28271- | A | - | 1742 | 1742 | AY.16 | 0.661352 |
| noncoding | 28271 | A28271- | A | - | 1688 | 1688 | AY.10 | 0.894542 |
| noncoding | 28271 | A28271- | A | - | 1678 | 1678 | AY.65 | 0.894456 |
| noncoding | 28271 | A28271- | A | - | 1631 | 1631 | AY.8 | 0.988485 |
| noncoding | 28271 | A28271- | A | - | 1619 | 1619 | Q.2 | 0.993252 |
| noncoding | 28271 | A28271- | A | - | 1610 | 1610 | AY.64 | 0.958333 |
| noncoding | 28271 | A28271- | A | - | 1555 | 1555 | B.1.619.1 | 0.997434 |
| noncoding | 28271 | A28271- | A | - | 1518 | 1518 | C.36.3 | 0.861032 |
| noncoding | 28271 | A28271- | A | - | 1505 | 1505 | AY.57 | 0.987533 |
| noncoding | 28271 | A28271- | A | - | 1504 | 1504 | AY.7.2 | 0.841163 |
| noncoding | 28271 | A28271- | A | - | 1490 | 1490 | AY.105 | 0.958199 |
| noncoding | 28271 | A28271- | A | - | 1431 | 1431 | AY.73 | 0.952096 |
| noncoding | 28271 | A28271- | A | - | 1419 | 1419 | AY.90 | 0.971253 |
| noncoding | 28271 | A28271- | A | - | 1375 | 1375 | AY.39.1.1 | 0.996377 |
| noncoding | 28271 | A28271- | A | - | 1328 | 1328 | AY.46.2 | 0.84371 |
| noncoding | 28271 | A28271- | A | - | 1253 | 1253 | AY.38 | 0.625562 |
| noncoding | 28271 | A28271- | A | - | 1223 | 1223 | AY.4.1 | 0.901917 |
| noncoding | 28271 | A28271- | A | - | 1222 | 1222 | AY.109 | 0.903846 |
| noncoding | 28271 | A28271- | A | - | 1197 | 1197 | AY.16.1 | 0.5625 |
| noncoding | 28271 | A28271- | A | - | 1140 | 1140 | AY.87 | 0.949209 |
| noncoding | 28271 | A28271- | A | - | 1089 | 1089 | AY.86 | 0.903734 |
| noncoding | 28271 | A28271- | A | - | 1068 | 1068 | AY.52 | 0.869707 |
| noncoding | 28271 | A28271- | A | - | 1048 | 1048 | AY.46.3 | 0.978525 |
| noncoding | 28271 | A28271- | A | - | 1045 | 1045 | AY.58 | 0.948276 |
| noncoding | 28271 | A28271- | A | - | 1005 | 1005 | AY.88 | 0.888594 |
| noncoding | 28271 | A28271- | A | - | 996 | 996 | AY.51 | 0.905455 |
| noncoding | 28271 | A28271- | A | - | 987 | 987 | AY.91 | 0.720964 |
| noncoding | 28271 | A28271- | A | - | 976 | 976 | AY.60 | 0.915572 |
| noncoding | 28271 | A28271- | A | - | 956 | 956 | AY.46.1 | 0.98152 |
| noncoding | 28271 | A28271- | A | - | 942 | 942 | B.1.619 | 0.820557 |
| noncoding | 28271 | A28271- | A | - | 899 | 899 | AY.32 | 0.478701 |
| noncoding | 28271 | A28271- | A | - | 897 | 897 | AY.40 | 0.864995 |
| noncoding | 28271 | A28271- | A | - | 881 | 881 | AY.80 | 0.994357 |
| noncoding | 28271 | A28271- | A | - | 850 | 850 | Q.7 | 0.944444 |
| noncoding | 28271 | A28271- | A | - | 840 | 840 | AY.66 | 0.898396 |
| noncoding | 28271 | A28271- | A | - | 836 | 836 | AY.4.3 | 0.703704 |
| noncoding | 28271 | A28271- | A | - | 813 | 813 | AY.95 | 0.618721 |
| noncoding | 28271 | A28271- | A | - | 804 | 804 | AY.79 | 0.973366 |
| noncoding | 28271 | A28271- | A | - | 801 | 801 | AY.19 | 0.913341 |
| noncoding | 28271 | A28271- | A | - | 798 | 798 | AY.108 | 0.879824 |
| noncoding | 28271 | A28271- | A | - | 735 | 735 | AY.11 | 0.983936 |
| noncoding | 28271 | A28271- | A | - | 712 | 712 | B | 0.091002 |
| noncoding | 28271 | A28271- | A | - | 686 | 686 | AY.72 | 0.933333 |
| noncoding | 28271 | A28271- | A | - | 643 | 643 | AY.77 | 0.724915 |
| noncoding | 28271 | A28271- | A | - | 615 | 615 | AY.39.2 | 0.947612 |
| noncoding | 28271 | A28271- | A | - | 612 | 612 | AY.82 | 0.830393 |
| noncoding | 28271 | A28271- | A | - | 607 | 607 | AY.99.1 | 0.942547 |
| noncoding | 28271 | A28271- | A | - | 600 | 600 | AY.99 | 0.629591 |
| noncoding | 28271 | A28271- | A | - | 586 | 586 | P.3 | 0.934609 |
| noncoding | 28271 | A28271- | A | - | 577 | 577 | AY.83 | 0.994828 |
| noncoding | 28271 | A28271- | A | - | 527 | 527 | AY.56 | 0.845907 |
| noncoding | 28271 | A28271- | A | - | 504 | 504 | AY.9.2.1 | 0.996047 |
| noncoding | 28271 | A28271- | A | - | 492 | 492 | AY.97 | 0.836735 |
| noncoding | 28271 | A28271- | A | - | 490 | 490 | AY.104 | 0.972222 |
| noncoding | 28271 | A28271- | A | - | 490 | 490 | AY.28 | 0.926276 |
| noncoding | 28271 | A28271- | A | - | 484 | 484 | AY.81 | 0.964143 |
| noncoding | 28271 | A28271- | A | - | 464 | 464 | AY.22 | 0.970711 |
| noncoding | 28271 | A28271- | A | - | 450 | 450 | AY.78 | 0.693374 |
| noncoding | 28271 | A28271- | A | - | 411 | 411 | AY.15 | 0.913333 |
| noncoding | 28271 | A28271- | A | - | 401 | 401 | C.36 | 0.365209 |
| noncoding | 28271 | A28271- | A | - | 366 | 366 | AY.5.2 | 0.901478 |
| noncoding | 28271 | A28271- | A | - | 355 | 355 | B.1.575.1 | 0.865854 |
| noncoding | 28271 | A28271- | A | - | 352 | 352 | AY.120.2 | 0.452442 |
| noncoding | 28271 | A28271- | A | - | 325 | 325 | AY.21 | 0.616698 |
| noncoding | 28271 | A28271- | A | - | 318 | 318 | C.36.3.1 | 0.86413 |
| noncoding | 28271 | A28271- | A | - | 274 | 274 | B.1.631 | 0.922559 |
| noncoding | 28271 | A28271- | A | - | 266 | 266 | AY.96 | 0.551867 |
| noncoding | 28271 | A28271- | A | - | 262 | 262 | AY.5.1 | 0.984962 |
| noncoding | 28271 | A28271- | A | - | 262 | 262 | AY.55 | 0.240367 |
| noncoding | 28271 | A28271- | A | - | 261 | 261 | B.1.2 | 0.002298 |
| noncoding | 28271 | A28271- | A | - | 226 | 226 | AY.91.1 | 0.918699 |
| noncoding | 28271 | A28271- | A | - | 215 | 215 | AY.49 | 0.686901 |
| noncoding | 28271 | A28271- | A | - | 208 | 208 | B.1.575.2 | 1 |
| noncoding | 28271 | A28271- | A | - | 196 | 196 | AV.1 | 0.989899 |
| noncoding | 28271 | A28271- | A | - | 183 | 183 | AY.76 | 0.884058 |
| noncoding | 28271 | A28271- | A | - | 170 | 170 | AY.89 | 0.833333 |
| noncoding | 28271 | A28271- | A | - | 168 | 168 | B.1.626 | 0.96 |
| noncoding | 28271 | A28271- | A | - | 165 | 165 | B.1.214.2 | 0.098921 |
| noncoding | 28271 | A28271- | A | - | 163 | 163 | A.29 | 0.867021 |
| noncoding | 28271 | A28271- | A | - | 157 | 157 | B.1.177.73 | 0.088901 |
| noncoding | 28271 | A28271- | A | - | 149 | 149 | Q.6 | 0.986755 |
| noncoding | 28271 | A28271- | A | - | 132 | 132 | B.1.617.3 | 0.39403 |
| noncoding | 28271 | A28271- | A | - | 127 | 127 | AY.50 | 0.101519 |
| noncoding | 28271 | A28271- | A | - | 127 | 127 | B.1.576 | 0.115141 |
| noncoding | 28271 | A28271- | A | - | 126 | 126 | B.1.415.1 | 0.954545 |
| noncoding | 28271 | A28271- | A | - | 116 | 116 | B.1.1.220 | 0.215613 |
| noncoding | 28271 | A28271- | A | - | 99 | 99 | C.38 | 0.798387 |
| noncoding | 28271 | A28271- | A | - | 84 | 84 | P.1 | 0.001323 |
| noncoding | 28271 | A28271- | A | - | 82 | 82 | B.1.177 | 0.00108 |
| noncoding | 28271 | A28271- | A | - | 67 | 67 | B.1.243.2 | 0.971014 |
| noncoding | 28271 | A28271- | A | - | 64 | 64 | B.1.1.519 | 0.002541 |
| noncoding | 28271 | A28271- | A | - | 64 | 64 | B.1.629 | 0.853333 |
| noncoding | 28271 | A28271- | A | - | 58 | 58 | Q.5 | 0.983051 |
| noncoding | 28271 | A28271- | A | - | 55 | 55 | AY.17 | 0.45082 |
| noncoding | 28271 | A28271- | A | - | 54 | 54 | B.1.375 | 0.044262 |
| noncoding | 28271 | A28271- | A | - | 53 | 53 | B.1.623 | 0.028433 |
| noncoding | 28271 | A28271- | A | - | 52 | 52 | AY.31 | 0.962963 |
| noncoding | 28271 | A28271- | A | - | 51 | 51 | B.1.177.7 | 0.008408 |
| noncoding | 28271 | A28271- | A | - | 46 | 46 | B.1.1.524 | 0.958333 |
| noncoding | 28271 | A28271- | A | - | 46 | 46 | B.1.351 | 0.001367 |
| noncoding | 28271 | A28271- | A | - | 46 | 46 | P.1.1 | 0.014612 |
| noncoding | 28271 | A28271- | A | - | 45 | 45 | B.1.258.17 | 0.004679 |
| noncoding | 28271 | A28271- | A | - | 45 | 45 | XA | 1 |
| noncoding | 28271 | A28271- | A | - | 43 | 43 | C.37 | 0.004991 |
| noncoding | 28271 | A28271- | A | - | 42 | 42 | B.1.1.294 | 0.053165 |
| noncoding | 28271 | A28271- | A | - | 40 | 40 | B.1.1.525 | 0.218579 |
| noncoding | 28271 | A28271- | A | - | 36 | 36 | B.1.1.312 | 0.068834 |
| noncoding | 28271 | A28271- | A | - | 35 | 35 | B.1.221 | 0.002486 |
| noncoding | 28271 | A28271- | A | - | 32 | 32 | B.1.346 | 0.04194 |
| noncoding | 28271 | A28271- | A | - | 31 | 31 | A | 0.011997 |
| noncoding | 28271 | A28271- | A | - | 31 | 31 | B.1.595 | 0.00809 |
| noncoding | 28271 | A28271- | A | - | 31 | 31 | B.1.596 | 0.002701 |
| noncoding | 28271 | A28271- | A | - | 31 | 31 | B.1.621 | 0.002744 |
| noncoding | 28271 | A28271- | A | - | 29 | 29 | B.1.427 | 0.001464 |
| noncoding | 28271 | A28271- | A | - | 27 | 27 | C.40 | 0.75 |
| noncoding | 28271 | A28271- | A | - | 25 | 25 | AY.18 | 0.252525 |
| noncoding | 28271 | A28271- | A | - | 20 | 20 | B.1.1.317 | 0.008234 |
| noncoding | 28271 | A28271- | A | - | 18 | 18 | AY.115 | 0.09375 |
| noncoding | 28271 | A28271- | A | - | 17 | 17 | B.1.160 | 0.00053 |
| noncoding | 28271 | A28271- | A | - | 17 | 17 | B.1.214 | 0.062271 |
| noncoding | 28271 | A28271- | A | - | 17 | 17 | B.1.214.3 | 0.121429 |
| noncoding | 28271 | A28271- | A | - | 16 | 16 | B.1.177.76 | 0.0399 |
| noncoding | 28271 | A28271- | A | - | 15 | 15 | B.1.1.10 | 0.016722 |
| noncoding | 28271 | A28271- | A | - | 15 | 15 | B.1.258 | 0.000998 |
| noncoding | 28271 | A28271- | A | - | 15 | 15 | B.1.609 | 0.007191 |
| noncoding | 28271 | A28271- | A | - | 14 | 14 | B.1.1.528 | 0.067308 |
| noncoding | 28271 | A28271- | A | - | 14 | 14 | B.1.36 | 0.002043 |
| noncoding | 28271 | A28271- | A | - | 14 | 14 | B.1.416 | 0.017766 |
| noncoding | 28271 | A28271- | A | - | 14 | 14 | P.1.16 | 0.005238 |
| noncoding | 28271 | A28271- | A | - | 12 | 12 | B.1.1.526 | 0.042553 |
| noncoding | 28271 | A28271- | A | - | 12 | 12 | B.1.165 | 0.142857 |
| noncoding | 28271 | A28271- | A | - | 12 | 12 | B.1.324 | 0.019262 |
| noncoding | 28271 | A28271- | A | - | 12 | 12 | B.1.627 | 0.024242 |
| noncoding | 28271 | A28271- | A | - | 12 | 12 | P.5 | 0.164384 |
| noncoding | 28271 | A28271- | A | - | 11 | 11 | B.1.625 | 0.025882 |
| noncoding | 28271 | A28271- | A | - | 11 | 11 | B.1.638 | 0.578947 |
| noncoding | 28271 | A28271- | A | - | 10 | 10 | 0.555556 | |
| noncoding | 28271 | A28271- | A | - | 10 | 10 | B.1.367 | 0.007924 |
| noncoding | 28271 | A28271- | A | - | 10 | 10 | B.1.429 | 0.000235 |
| noncoding | 28271 | A28271- | A | - | 10 | 10 | B.1.525 | 0.001132 |
| noncoding | 28271 | A28271- | A | - | 10 | 10 | P.1.12 | 0.00484 |
| noncoding | 28271 | A28271- | A | - | 9 | 9 | B.1.632 | 0.060403 |
| noncoding | 28271 | A28271- | A | - | 8 | 8 | B.1.1.222 | 0.001632 |
| noncoding | 28271 | A28271- | A | - | 8 | 8 | B.1.1.318 | 0.002414 |
| noncoding | 28271 | A28271- | A | - | 8 | 8 | B.1.336 | 0.019512 |
| noncoding | 28271 | A28271- | A | - | 7 | 7 | A.2 | 0.004633 |
| noncoding | 28271 | A28271- | A | - | 7 | 7 | B.1.1.28 | 0.002179 |
| noncoding | 28271 | A28271- | A | - | 7 | 7 | B.1.128 | 0.004447 |
| noncoding | 28271 | A28271- | A | - | 7 | 7 | B.1.243 | 0.000487 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | A.2.5 | 0.002994 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.1.39 | 0.003058 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.1.70 | 0.002046 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.157 | 0.01791 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.177.33 | 0.009868 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.311 | 0.001647 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.349 | 0.004289 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.411 | 0.022222 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.524 | 0.008439 |
| noncoding | 28271 | A28271- | A | - | 6 | 6 | B.1.530 | 0.042857 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | AZ.2 | 0.004105 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.1.515 | 0.1 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.139 | 0.003666 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.177.4 | 0.001055 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.208 | 0.2 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.241 | 0.004058 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.369 | 0.001426 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.474 | 0.009506 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.580 | 0.020325 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.604 | 0.086207 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.620 | 0.00473 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.636 | 0.033557 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | B.1.93 | 0.004669 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | C.17 | 0.277778 |
| noncoding | 28271 | A28271- | A | - | 5 | 5 | P.1.17 | 0.000809 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | A.23.1 | 0.002817 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.1.241 | 0.008282 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.1.306 | 0.001754 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.1.448 | 0.00813 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.170 | 0.017241 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.177.81 | 0.000757 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.214.1 | 0.08 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.240 | 0.000862 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.243.1 | 0.088889 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.335 | 0.041237 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.466.2 | 0.001565 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.517 | 0.001708 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.618 | 0.016129 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.1.81 | 0.085106 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.40 | 0.001457 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | B.52 | 0.040404 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | C.14 | 0.017316 |
| noncoding | 28271 | A28271- | A | - | 4 | 4 | P.1.7 | 0.001277 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | A.30 | 0.428571 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.189 | 0.004539 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.291 | 0.002227 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.372 | 0.002066 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.432 | 0.003797 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.464 | 0.004418 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.50 | 0.002037 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.51 | 0.005155 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.1.521 | 0.016043 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.234 | 0.000396 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.237 | 0.014925 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.258.14 | 0.002941 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.380 | 0.019868 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.462 | 0.021739 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.544 | 0.018072 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.582 | 0.001472 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | B.1.600 | 0.017544 |
| noncoding | 28271 | A28271- | A | - | 3 | 3 | C.39 | 0.056604 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | A.27 | 0.003311 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | AU.2 | 0.004843 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | AU.3 | 0.004219 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.25 | 0.001137 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.301 | 0.002358 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.315 | 0.016949 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.33 | 0.000842 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.34 | 0.026316 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.412 | 0.015267 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.1.413 | 0.013793 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.111 | 0.00235 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.143 | 0.042553 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.149 | 0.006849 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.177.62 | 0.002384 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.177.86 | 0.000367 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.220 | 0.021739 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.247 | 0.029851 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.265 | 0.002541 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.325 | 0.013793 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.351.3 | 0.001753 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.351.5 | 0.001199 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.378 | 0.013699 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.397 | 0.009709 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.413 | 0.008511 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.432 | 0.022472 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.433 | 0.00639 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.538 | 0.016129 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.561 | 0.000794 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.567 | 0.006667 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.1.588 | 0.00182 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | B.55 | 0.0059 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | C.1 | 0.004785 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | C.1.2 | 0.008511 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | C.37.1 | 0.005236 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | P.1.15 | 0.000465 |
| noncoding | 28271 | A28271- | A | - | 2 | 2 | P.2 | 0.000373 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | A.25 | 0.018182 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | A.28 | 0.002646 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.1 | 0.000327 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.196 | 0.005714 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.198 | 0.001468 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.210 | 0.005714 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.232 | 0.001815 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.236 | 0.006897 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.263 | 0.001558 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.265 | 0.003155 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.280 | 0.003086 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.305 | 0.003861 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.326 | 0.001761 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.389 | 0.006061 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.397 | 0.002252 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.416 | 0.000905 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.512 | 0.028571 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.1.8 | 0.003584 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.131 | 0.008772 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.142 | 0.002899 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.160.14 | 0.002119 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.160.16 | 0.000929 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.160.8 | 0.001289 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.161 | 0.017241 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.15 | 0.000631 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.21 | 0.000076 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.31 | 0.011494 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.84 | 0.006667 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.177.85 | 0.005435 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.179 | 0.003759 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.190 | 0.01 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.206 | 0.000816 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.214.4 | 0.009091 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.218 | 0.005155 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.260 | 0.003344 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.298 | 0.002114 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.338 | 0.008621 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.356 | 0.001727 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.36.29 | 0.000517 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.36.38 | 0.001642 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.36.8 | 0.001 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.362 | 0.001541 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.366 | 0.004878 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.371 | 0.001122 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.396 | 0.000706 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.421 | 0.007463 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.428 | 0.00102 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.456 | 0.003268 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.459 | 0.004082 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.466 | 0.023256 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.468 | 0.005714 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.497 | 0.000315 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.548 | 0.035714 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.551 | 0.00129 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.560 | 0.00463 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.564 | 0.000426 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.565 | 0.00081 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.568 | 0.001111 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.577 | 0.000687 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.581 | 0.009434 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.590 | 0.004545 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.599 | 0.00365 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.70 | 0.02439 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.1.78 | 0.008547 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.13 | 0.045455 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.37 | 0.028571 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | B.6 | 0.00091 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | C.16 | 0.00106 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | C.2.1 | 0.006667 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | C.35 | 0.000774 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | C.4 | 0.01 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | C.6 | 0.037037 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | L.3 | 0.003546 |
| noncoding | 28271 | A28271- | A | - | 1 | 1 | P.1.10 | 0.000269 |
 |
 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|