CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 61 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding61G61TnoncodingGT67386738161-61

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding61G61TGT67386738All0.001289
noncoding61G61TGT974974AY.40.001516
noncoding61G61TGT787787B.1.1.70.000705
noncoding61G61TGT387387B.1.1.630.149306
noncoding61G61TGT372372B.1.20.003276
noncoding61G61TGT347347B.1.36.260.991429
noncoding61G61TGT259259AY.770.291995
noncoding61G61TGT249249B.10.002281
noncoding61G61TGT215215B.1.1.2430.877551
noncoding61G61TGT211211B.1.1.390.107543
noncoding61G61TGT208208B.1.1.5190.00826
noncoding61G61TGT179179B.1.10.003247
noncoding61G61TGT141141B.1.617.20.000531
noncoding61G61TGT127127B.1.1770.001672
noncoding61G61TGT102102AY.430.000452
noncoding61G61TGT8686B.1.5300.614286
noncoding61G61TGT8686Q.10.010864
noncoding61G61TGT7878B.1.177.860.014309
noncoding61G61TGT7777AY.290.001215
noncoding61G61TGT7676B.1.1600.00237
noncoding61G61TGT6969P.10.001087
noncoding61G61TGT6767AY.1020.001776
noncoding61G61TGT6767AY.1030.000416
noncoding61G61TGT6262AY.30.000617
noncoding61G61TGT6060C.180.15544
noncoding61G61TGT5555AY.1200.002045
noncoding61G61TGT5353C.370.006151
noncoding61G61TGT5151AY.420.002052
noncoding61G61TGT5050B.1.1.3060.02192
noncoding61G61TGT4848B.1.177.830.071111
noncoding61G61TGT4646AY.250.000277
noncoding61G61TGT4141Q.30.005946
noncoding61G61TGT3838AY.1190.001342
noncoding61G61TGT3434B.1.360.004961
noncoding61G61TGT2929C.36.21
noncoding61G61TGT2727AY.440.000164
noncoding61G61TGT2626AY.200.00101
noncoding61G61TGT2626B.1.2340.003431
noncoding61G61TGT2424AY.470.000747
noncoding61G61TGT2424B.1.5810.226415
noncoding61G61TGT2323AY.260.000651
noncoding61G61TGT2222AY.390.000544
noncoding61G61TGT2121AY.50.000434
noncoding61G61TGT2121B.1.1460.088983
noncoding61G61TGT1919AY.4.50.002042
noncoding61G61TGT1919B.1.2390.023199
noncoding61G61TGT1818B.1.1.2160.016028
noncoding61G61TGT1515AY.1170.001268
noncoding61G61TGT1515B.1.3510.000446
noncoding61G61TGT1515B.1.5260.000353
noncoding61G61TGT1414B.1.438.10.001502
noncoding61G61TGT1313B.1.2430.000905
noncoding61G61TGT1313B.1.3960.009174
noncoding61G61TGT1212AY.210.02277
noncoding61G61TGT1212B.1.1.4340.004183
noncoding61G61TGT1212B.1.2400.002587
noncoding61G61TGT1212B.40.02649
noncoding61G61TGT1111AY.1010.005395
noncoding61G61TGT1111B.1.1.3050.042471
noncoding61G61TGT1111B.1.1470.008314
noncoding61G61TGT1111B.1.4290.000259
noncoding61G61TGT1010AY.600.009381
noncoding61G61TGT1010B.1.2210.00071
noncoding61G61TGT1010B.1.4270.000505
noncoding61G61TGT1010P.20.001866
noncoding61G61TGT99AY.730.005988
noncoding61G61TGT99B.1.617.10.001161
noncoding61G61TGT99P.1.140.00043
noncoding61G61TGT88AY.39.10.000317
noncoding61G61TGT88AY.460.000833
noncoding61G61TGT88D.20.0006
noncoding61G61TGT77AY.360.001037
noncoding61G61TGT77AY.4.20.000152
noncoding61G61TGT77AY.450.000852
noncoding61G61TGT77AY.60.000288
noncoding61G61TGT77AY.740.00081
noncoding61G61TGT77AY.9.10.000586
noncoding61G61TGT77AY.9.20.000257
noncoding61G61TGT77B.1.36.180.002941
noncoding61G61TGT66AY.1210.000812
noncoding61G61TGT66AY.7.10.000676
noncoding61G61TGT66AY.750.000336
noncoding61G61TGT66B.1.1.1890.009077
noncoding61G61TGT66B.1.177.820.002864
noncoding61G61TGT55AY.410.00147
noncoding61G61TGT55AY.98.10.000242
noncoding61G61TGT55B0.000639
noncoding61G61TGT55B.1.1.10.001633
noncoding61G61TGT55B.1.1.2360.034483
noncoding61G61TGT55B.1.1.250.002843
noncoding61G61TGT55B.1.1.280.001556
noncoding61G61TGT55B.1.1.2840.000537
noncoding61G61TGT55B.1.110.30.003592
noncoding61G61TGT55B.1.177.600.001092
noncoding61G61TGT55B.1.36.160.007123
noncoding61G61TGT55B.1.3910.005637
noncoding61G61TGT55Q.80.000825
noncoding61G61TGT44AY.1000.000184
noncoding61G61TGT44AY.330.000267
noncoding61G61TGT44AY.4.2.10.000596
noncoding61G61TGT44AY.46.60.000289
noncoding61G61TGT44AY.540.000381
noncoding61G61TGT44AY.90.00027
noncoding61G61TGT44B.1.1.2220.000816
noncoding61G61TGT44B.1.1.3170.001647
noncoding61G61TGT44B.1.1.3180.001207
noncoding61G61TGT44B.1.1.440.009639
noncoding61G61TGT44B.1.1.5160.266667
noncoding61G61TGT44B.1.36.80.004
noncoding61G61TGT44B.1.416.10.00625
noncoding61G61TGT44B.1.5610.001588
noncoding61G61TGT44B.1.6090.001918
noncoding61G61TGT44B.1.6210.000354
noncoding61G61TGT44P.1.150.000929
noncoding61G61TGT33A.2.5.20.004717
noncoding61G61TGT33AY.1100.000338
noncoding61G61TGT33AY.1130.000427
noncoding61G61TGT33AY.230.000209
noncoding61G61TGT33AY.270.000194
noncoding61G61TGT33AY.300.001187
noncoding61G61TGT33AY.70.000588
noncoding61G61TGT33B.1.1.2140.000166
noncoding61G61TGT33B.1.1.2770.002276
noncoding61G61TGT33B.1.1.710.018182
noncoding61G61TGT33B.1.3610.003866
noncoding61G61TGT33B.1.3620.004622
noncoding61G61TGT33B.1.3690.000856
noncoding61G61TGT33B.1.4020.029412
noncoding61G61TGT33B.1.4530.009709
noncoding61G61TGT33B.1.4560.009804
noncoding61G61TGT33B.1.5960.000261
noncoding61G61TGT33B.1.6370.000219
noncoding61G61TGT33B.1.780.025641
noncoding61G61TGT33B.60.00273
noncoding61G61TGT33C.140.012987
noncoding61G61TGT33P.1.130.002695
noncoding61G61TGT22A0.000774
noncoding61G61TGT22A.2.50.000998
noncoding61G61TGT22AD.20.000438
noncoding61G61TGT22AY.110.002677
noncoding61G61TGT22AY.1180.000125
noncoding61G61TGT22AY.120.2.10.000997
noncoding61G61TGT22AY.140.000176
noncoding61G61TGT22AY.530.000575
noncoding61G61TGT22AY.550.001835
noncoding61G61TGT22AY.610.00021
noncoding61G61TGT22AY.680.000547
noncoding61G61TGT22AY.700.000417
noncoding61G61TGT22AY.870.001665
noncoding61G61TGT22B.1.1.2070.002364
noncoding61G61TGT22B.1.1.2200.003717
noncoding61G61TGT22B.1.1.2280.006098
noncoding61G61TGT22B.1.1.3160.00185
noncoding61G61TGT22B.1.1.3200.036364
noncoding61G61TGT22B.1.1.3260.003521
noncoding61G61TGT22B.1.1.3590.055556
noncoding61G61TGT22B.1.1.460.008734
noncoding61G61TGT22B.1.1310.017544
noncoding61G61TGT22B.1.177.330.003289
noncoding61G61TGT22B.1.177.350.001382
noncoding61G61TGT22B.1.177.620.002384
noncoding61G61TGT22B.1.177.650.001331
noncoding61G61TGT22B.1.221.40.008333
noncoding61G61TGT22B.1.4380.013072
noncoding61G61TGT22B.1.5170.000854
noncoding61G61TGT22B.1.5380.016129
noncoding61G61TGT22B.1.5510.002581
noncoding61G61TGT22B.1.6200.001892
noncoding61G61TGT22B.30.001661
noncoding61G61TGT22B.400.000729
noncoding61G61TGT22Q.40.00091
noncoding61G61TGT11A.23.10.000704
noncoding61G61TGT11AE.20.058824
noncoding61G61TGT11AY.1060.000335
noncoding61G61TGT11AY.1070.000466
noncoding61G61TGT11AY.1080.001103
noncoding61G61TGT11AY.1160.000287
noncoding61G61TGT11AY.120.000316
noncoding61G61TGT11AY.120.20.001285
noncoding61G61TGT11AY.130.000161
noncoding61G61TGT11AY.16.10.00047
noncoding61G61TGT11AY.240.000431
noncoding61G61TGT11AY.29.10.000221
noncoding61G61TGT11AY.3.10.000085
noncoding61G61TGT11AY.4.40.000409
noncoding61G61TGT11AY.400.000964
noncoding61G61TGT11AY.46.40.000165
noncoding61G61TGT11AY.570.000656
noncoding61G61TGT11AY.690.000187
noncoding61G61TGT11AY.75.10.00018
noncoding61G61TGT11AY.820.001357
noncoding61G61TGT11AY.850.000427
noncoding61G61TGT11AY.910.00073
noncoding61G61TGT11AY.950.000761
noncoding61G61TGT11AY.980.000079
noncoding61G61TGT11AZ.10.000867
noncoding61G61TGT11B.1.1.1180.010204
noncoding61G61TGT11B.1.1.1530.001095
noncoding61G61TGT11B.1.1.1710.003676
noncoding61G61TGT11B.1.1.1860.003436
noncoding61G61TGT11B.1.1.1920.002309
noncoding61G61TGT11B.1.1.1980.001468
noncoding61G61TGT11B.1.1.2320.001815
noncoding61G61TGT11B.1.1.2510.007937
noncoding61G61TGT11B.1.1.2690.001353
noncoding61G61TGT11B.1.1.2730.006757
noncoding61G61TGT11B.1.1.2850.006536
noncoding61G61TGT11B.1.1.2910.000742
noncoding61G61TGT11B.1.1.3010.001179
noncoding61G61TGT11B.1.1.3020.002075
noncoding61G61TGT11B.1.1.3090.005848
noncoding61G61TGT11B.1.1.3110.000358
noncoding61G61TGT11B.1.1.3220.008772
noncoding61G61TGT11B.1.1.3700.012658
noncoding61G61TGT11B.1.1.3720.000689
noncoding61G61TGT11B.1.1.3970.002252
noncoding61G61TGT11B.1.1.3980.003226
noncoding61G61TGT11B.1.1.4060.006494
noncoding61G61TGT11B.1.1.4090.002833
noncoding61G61TGT11B.1.1.4110.014706
noncoding61G61TGT11B.1.1.4420.018519
noncoding61G61TGT11B.1.1.470.005348
noncoding61G61TGT11B.1.1.5180.006329
noncoding61G61TGT11B.1.1.700.000341
noncoding61G61TGT11B.1.1.830.00271
noncoding61G61TGT11B.1.1.890.006061
noncoding61G61TGT11B.1.1110.001175
noncoding61G61TGT11B.1.130.002375
noncoding61G61TGT11B.1.1390.000733
noncoding61G61TGT11B.1.1570.002985
noncoding61G61TGT11B.1.160.120.00641
noncoding61G61TGT11B.1.177.100.000878
noncoding61G61TGT11B.1.177.200.001517
noncoding61G61TGT11B.1.177.320.00135
noncoding61G61TGT11B.1.177.570.000281
noncoding61G61TGT11B.1.177.750.001041
noncoding61G61TGT11B.1.2100.002132
noncoding61G61TGT11B.1.221.30.000833
noncoding61G61TGT11B.1.2350.002519
noncoding61G61TGT11B.1.2580.000067
noncoding61G61TGT11B.1.258.170.000104
noncoding61G61TGT11B.1.2600.003344
noncoding61G61TGT11B.1.30.002618
noncoding61G61TGT11B.1.3010.005917
noncoding61G61TGT11B.1.3300.028571
noncoding61G61TGT11B.1.351.30.000876
noncoding61G61TGT11B.1.36.10.00114
noncoding61G61TGT11B.1.36.100.004785
noncoding61G61TGT11B.1.36.290.000517
noncoding61G61TGT11B.1.36.310.001751
noncoding61G61TGT11B.1.36.350.002604
noncoding61G61TGT11B.1.36.360.000602
noncoding61G61TGT11B.1.36.380.001642
noncoding61G61TGT11B.1.3800.006623
noncoding61G61TGT11B.1.3820.008929
noncoding61G61TGT11B.1.3980.002976
noncoding61G61TGT11B.1.3990.001934
noncoding61G61TGT11B.1.4090.000781
noncoding61G61TGT11B.1.4130.004255
noncoding61G61TGT11B.1.4280.00102
noncoding61G61TGT11B.1.4990.00105
noncoding61G61TGT11B.1.5030.002488
noncoding61G61TGT11B.1.5250.000113
noncoding61G61TGT11B.1.5330.009615
noncoding61G61TGT11B.1.5440.006024
noncoding61G61TGT11B.1.564.10.001577
noncoding61G61TGT11B.1.5670.003333
noncoding61G61TGT11B.1.5950.000261
noncoding61G61TGT11B.1.621.10.000506
noncoding61G61TGT11B.1.6340.003425
noncoding61G61TGT11B.110.005128
noncoding61G61TGT11B.550.00295
noncoding61G61TGT11C.130.025641
noncoding61G61TGT11C.170.055556
noncoding61G61TGT11C.20.016129
noncoding61G61TGT11C.30.007634
noncoding61G61TGT11C.350.000774
noncoding61G61TGT11C.360.000911
noncoding61G61TGT11P.1.100.000269
noncoding61G61TGT11P.1.170.000162
noncoding61G61TGT11P.1.20.001156
noncoding61G61TGT11P.1.70.000319
noncoding61G61TGT11Q.60.006623
noncoding61G61TGT11R.10.00009
noncoding61G61TGT11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.