CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 44

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding44C44TnoncodingCT20382038144-44
noncoding44C44-noncodingC-4141144-44
noncoding44C44AnoncodingCA3434144-44
noncoding44C44GnoncodingCG2727144-44
noncoding44C44RnoncodingCR11144-44
noncoding44C44HnoncodingCH11144-44
noncoding44C44VnoncodingCV11144-44

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding44C44TCT20382038All0.00039
noncoding44C44TCT486486B.1.1.70.000435
noncoding44C44TCT198198AY.250.001191
noncoding44C44TCT185185B.1.617.20.000697
noncoding44C44TCT9999B.10.000907
noncoding44C44TCT7171A.280.187831
noncoding44C44TCT6969B.1.20.000608
noncoding44C44TCT6161B.1.1.1740.206081
noncoding44C44TCT5858AY.140.005105
noncoding44C44TCT5858AY.440.000353
noncoding44C44TCT4949B.1.4270.002474
noncoding44C44TCT4242AY.1030.000261
noncoding44C44-C-4141All0.000008
noncoding44C44TCT4141AY.200.001593
noncoding44C44TCT4141B.1.6090.019655
noncoding44C44TCT3939AY.30.000388
noncoding44C44TCT3838AY.40.000059
noncoding44C44ACA3434All0.000007
noncoding44C44GCG2727All0.000005
noncoding44C44TCT2525B.1.10.000454
noncoding44C44TCT2323AY.430.000102
noncoding44C44TCT2121B.1.4290.000494
noncoding44C44TCT2020AY.1020.00053
noncoding44C44TCT1919AY.70.003724
noncoding44C44TCT1919B.1.5250.00215
noncoding44C44TCT1616AY.260.000453
noncoding44C44TCT1515B.1.5290.833333
noncoding44C44TCT1313AY.470.000404
noncoding44C44TCT1313B.1.177.810.002461
noncoding44C44TCT1313B.1.5260.000306
noncoding44C44TCT1212AY.410.003527
noncoding44C44TCT1212P.10.000189
noncoding44C44TCT1010AY.390.000247
noncoding44C44TCT1010AY.620.004357
noncoding44C44TCT99B.1.3510.000268
noncoding44C44TCT99P.1.10.002859
noncoding44C44TCT88AY.750.000448
noncoding44C44ACA88B.1.10.000145
noncoding44C44TCT88B.1.1770.000105
noncoding44C44TCT77AY.3.10.000597
noncoding44C44TCT77B.1.1600.000218
noncoding44C44TCT77B.1.177.210.000535
noncoding44C44-C-77B.1.2100.014925
noncoding44C44TCT66AY.1000.000276
noncoding44C44TCT66AY.1060.002009
noncoding44C44TCT66B.1.1.2840.000644
noncoding44C44GCG66B.1.1.70.000005
noncoding44C44TCT55AY.1170.000423
noncoding44C44TCT55AY.460.00052
noncoding44C44TCT55B.1.2580.000333
noncoding44C44TCT55B.1.5170.002135
noncoding44C44TCT55P.1.150.001162
noncoding44C44-C-44AY.1030.000025
noncoding44C44TCT44AY.330.000267
noncoding44C44TCT44AY.98.10.000194
noncoding44C44TCT44B0.000511
noncoding44C44TCT44B.1.1.2220.000816
noncoding44C44TCT44B.1.1.2770.003035
noncoding44C44TCT44B.1.1.2790.004484
noncoding44C44TCT44B.1.1.3180.001207
noncoding44C44TCT44B.1.1.5190.000159
noncoding44C44-C-44B.1.1.70.000004
noncoding44C44TCT44B.1.2210.000284
noncoding44C44TCT33AY.1090.002219
noncoding44C44TCT33AY.1180.000188
noncoding44C44TCT33AY.23.10.001252
noncoding44C44TCT33AY.39.10.000119
noncoding44C44TCT33AY.50.000062
noncoding44C44TCT33AY.540.000286
noncoding44C44-C-33B.10.000027
noncoding44C44GCG33B.10.000027
noncoding44C44-C-33B.1.1.3060.001315
noncoding44C44-C-33B.1.1.460.0131
noncoding44C44ACA33B.1.1.70.000003
noncoding44C44ACA33B.1.1770.00004
noncoding44C44TCT33B.1.177.530.007177
noncoding44C44ACA33B.1.36.190.027778
noncoding44C44TCT33B.1.4510.02459
noncoding44C44TCT33B.1.5960.000261
noncoding44C44TCT22AK.10.025316
noncoding44C44TCT22AY.1160.000574
noncoding44C44TCT22AY.1190.000071
noncoding44C44TCT22AY.230.000139
noncoding44C44ACA22AY.30.00002
noncoding44C44TCT22AY.46.10.002053
noncoding44C44TCT22AY.690.000373
noncoding44C44TCT22AY.9.10.000167
noncoding44C44TCT22AY.9.20.000073
noncoding44C44GCG22B0.000256
noncoding44C44TCT22B.1.1.2610.017241
noncoding44C44TCT22B.1.1.2630.003115
noncoding44C44TCT22B.1.1.270.011299
noncoding44C44TCT22B.1.1.280.000622
noncoding44C44TCT22B.1.1.3060.000877
noncoding44C44TCT22B.1.1.3450.086957
noncoding44C44TCT22B.1.1.700.000682
noncoding44C44TCT22B.1.1430.042553
noncoding44C44TCT22B.1.177.150.001262
noncoding44C44GCG22B.1.20.000018
noncoding44C44GCG22B.1.2030.125
noncoding44C44TCT22B.1.2410.001623
noncoding44C44TCT22B.1.258.170.000208
noncoding44C44TCT22B.1.360.000292
noncoding44C44GCG22B.1.4970.00063
noncoding44C44TCT22B.1.5090.001732
noncoding44C44TCT22B.1.5610.000794
noncoding44C44TCT22B.1.617.10.000258
noncoding44C44TCT22B.1.6210.000177
noncoding44C44TCT22Q.30.00029
noncoding44C44TCT11A0.000387
noncoding44C44ACA11A.10.000282
noncoding44C44TCT11A.60.005128
noncoding44C44VCV11All0
noncoding44C44RCR11All0
noncoding44C44HCH11All0
noncoding44C44TCT11AY.100.00053
noncoding44C44TCT11AY.1130.000142
noncoding44C44TCT11AY.1200.000037
noncoding44C44ACA11AY.250.000006
noncoding44C44-C-11AY.250.000006
noncoding44C44-C-11AY.260.000028
noncoding44C44-C-11AY.290.000016
noncoding44C44TCT11AY.350.000233
noncoding44C44-C-11AY.370.000316
noncoding44C44ACA11AY.40.000002
noncoding44C44TCT11AY.4.50.000107
noncoding44C44ACA11AY.420.00004
noncoding44C44-C-11AY.430.000004
noncoding44C44GCG11AY.440.000006
noncoding44C44TCT11AY.5.30.000337
noncoding44C44-C-11AY.540.000095
noncoding44C44TCT11AY.610.000105
noncoding44C44TCT11AY.7.10.000113
noncoding44C44-C-11AY.750.000056
noncoding44C44TCT11AY.75.10.00018
noncoding44C44TCT11AY.910.00073
noncoding44C44TCT11AY.920.000287
noncoding44C44TCT11AY.930.000273
noncoding44C44ACA11AY.990.001049
noncoding44C44ACA11B0.000128
noncoding44C44ACA11B.10.000009
noncoding44C44TCT11B.1.1.100.001115
noncoding44C44-C-11B.1.1.1390.022727
noncoding44C44TCT11B.1.1.1600.02381
noncoding44C44GCG11B.1.1.1940.00495
noncoding44C44TCT11B.1.1.2200.001859
noncoding44C44ACA11B.1.1.2220.000204
noncoding44C44TCT11B.1.1.250.000569
noncoding44C44TCT11B.1.1.2510.007937
noncoding44C44-C-11B.1.1.2940.001266
noncoding44C44ACA11B.1.1.3170.000412
noncoding44C44ACA11B.1.1.3280.016949
noncoding44C44TCT11B.1.1.330.000421
noncoding44C44TCT11B.1.1.370.000193
noncoding44C44TCT11B.1.1.3980.003226
noncoding44C44TCT11B.1.1.4090.002833
noncoding44C44TCT11B.1.1.500.000679
noncoding44C44TCT11B.1.1.560.017857
noncoding44C44GCG11B.1.1490.003425
noncoding44C44ACA11B.1.1600.000031
noncoding44C44-C-11B.1.1770.000013
noncoding44C44TCT11B.1.177.350.000691
noncoding44C44ACA11B.1.177.40.000211
noncoding44C44TCT11B.1.177.540.000606
noncoding44C44TCT11B.1.177.620.001192
noncoding44C44TCT11B.1.177.70.000165
noncoding44C44VCV11B.1.20.000009
noncoding44C44TCT11B.1.2430.00007
noncoding44C44-C-11B.1.2580.000067
noncoding44C44TCT11B.1.258.140.00098
noncoding44C44GCG11B.1.258.170.000104
noncoding44C44TCT11B.1.2600.003344
noncoding44C44TCT11B.1.3110.000275
noncoding44C44TCT11B.1.3500.002933
noncoding44C44-C-11B.1.36.190.009259
noncoding44C44-C-11B.1.36.80.001
noncoding44C44TCT11B.1.3610.001289
noncoding44C44ACA11B.1.4270.00005
noncoding44C44GCG11B.1.4270.00005
noncoding44C44GCG11B.1.4290.000024
noncoding44C44TCT11B.1.466.10.007194
noncoding44C44-C-11B.1.4700.001404
noncoding44C44TCT11B.1.5040.03125
noncoding44C44GCG11B.1.5210.004975
noncoding44C44TCT11B.1.5240.001406
noncoding44C44-C-11B.1.5250.000113
noncoding44C44GCG11B.1.5260.000024
noncoding44C44TCT11B.1.5410.004425
noncoding44C44TCT11B.1.5640.000426
noncoding44C44TCT11B.1.5760.000907
noncoding44C44ACA11B.1.6090.000479
noncoding44C44GCG11B.1.617.20.000004
noncoding44C44TCT11B.1.617.30.002985
noncoding44C44TCT11B.1.619.10.000641
noncoding44C44GCG11B.1.619.10.000641
noncoding44C44TCT11B.1.6280.000352
noncoding44C44TCT11B.1.9.50.005682
noncoding44C44-C-11B.60.00091
noncoding44C44TCT11C.160.00106
noncoding44C44TCT11C.36.30.000567
noncoding44C44TCT11C.370.000116
noncoding44C44TCT11D.20.000075
noncoding44C44HCH11D.20.000075
noncoding44C44ACA11P.10.000016
noncoding44C44TCT11P.1.100.000269
noncoding44C44TCT11P.1.20.001156
noncoding44C44RCR11Q.10.000126
noncoding44C44-C-11Q.30.000145